FFCP PHASE1:Hg19::chr18:32073414..32073417,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1837|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=3057|TSSclassifier=S|UniProt=|association_with_transcript=133bp_to_ENST00000315456_5end|coexpression_cluster_id=C1005|description=CAGE_peak_18_at_DTNA_5end|id=chr18:32073414..32073417,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0002553;6.62e-41;1|ontology_enrichment_celltype_v019_2=CL:0002553,6.62e-41,1|ontology_enrichment_development_v019=UBERON:0006241;1.71e-14;3!UBERON:0006215;1.71e-14;3!UBERON:0003057;1.71e-14;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!3.73e-54!57;UBERON:0005068!3.73e-54!57;UBERON:0006241!3.73e-54!57;UBERON:0007135!3.73e-54!57;UBERON:0001017!1.25e-51!82;UBERON:0005743!1.98e-51!86;UBERON:0000073!7.13e-51!94;UBERON:0001016!7.13e-51!94;UBERON:0003075!5.02e-47!86;UBERON:0007284!5.02e-47!86;UBERON:0007023!6.20e-47!115;UBERON:0002616!2.57e-45!59;UBERON:0000955!1.19e-44!69;UBERON:0006238!1.19e-44!69;UBERON:0002346!1.81e-44!90;UBERON:0002020!4.35e-35!34;UBERON:0003528!4.35e-35!34;UBERON:0001893!6.53e-35!34;UBERON:0004121!5.00e-34!169;UBERON:0002780!6.97e-34!41;UBERON:0001890!6.97e-34!41;UBERON:0006240!6.97e-34!41;UBERON:0000924!5.87e-33!173;UBERON:0006601!5.87e-33!173;UBERON:0003080!6.14e-33!42;UBERON:0002791!8.48e-33!33;UBERON:0001869!1.04e-30!32;UBERON:0000033!1.34e-30!123;UBERON:0000153!1.09e-28!129;UBERON:0007811!1.09e-28!129;UBERON:0003056!5.83e-27!61;UBERON:0003076!5.28e-23!15;UBERON:0003057!5.28e-23!15;UBERON:0002619!5.89e-22!22;UBERON:0001950!7.21e-21!20;UBERON:0002308!8.22e-20!9;UBERON:0000125!8.22e-20!9;UBERON:0004733!2.46e-19!12;UBERON:0002028!2.46e-19!12;UBERON:0007277!2.46e-19!12;UBERON:0000956!5.16e-19!25;UBERON:0000203!5.16e-19!25;UBERON:0002298!5.39e-18!8;UBERON:0004732!1.06e-17!13;UBERON:0002420!2.57e-15!9;UBERON:0007245!2.57e-15!9;UBERON:0010009!2.57e-15!9;UBERON:0010011!2.57e-15!9;UBERON:0000454!2.57e-15!9;UBERON:0000025!4.16e-15!194;UBERON:0009663!9.90e-15!7;UBERON:0004111!2.15e-13!241;UBERON:0000477!3.04e-13!286;UBERON:0001871!1.63e-12!7;UBERON:0000369!1.65e-12!4;UBERON:0002435!1.65e-12!4;UBERON:0000204!1.65e-12!4;UBERON:0010082!1.65e-12!4;UBERON:0000064!5.14e-12!219;UBERON:0000200!9.77e-12!6;UBERON:0002680!1.46e-11!9;UBERON:0001895!1.46e-11!9;UBERON:0010092!1.46e-11!9;UBERON:0000483!1.68e-11!309;UBERON:0000119!2.81e-11!312;UBERON:0001896!1.99e-10!3;UBERON:0005290!1.99e-10!3;UBERON:0010096!1.99e-10!3;UBERON:0000475!2.24e-10!365;UBERON:0000988!9.52e-10!3;UBERON:0005383!9.80e-10!3;UBERON:0005382!9.80e-10!3;UBERON:0006331!3.62e-09!3;UBERON:0002771!4.05e-09!3;UBERON:0000923!2.69e-08!604;UBERON:0005291!2.69e-08!604;UBERON:0006598!2.69e-08!604;UBERON:0002532!2.69e-08!604;UBERON:0002050!2.94e-08!605;UBERON:0005423!2.94e-08!605;UBERON:0000922!5.46e-08!612;UBERON:0000062!7.78e-08!511;UBERON:0000481!1.56e-07!347;UBERON:0001873!1.99e-07!2;UBERON:0010122!1.99e-07!2;UBERON:0000467!6.58e-07!625;UBERON:0000480!7.13e-07!626;UBERON:0002148!7.47e-07!2;UBERON:0009662!7.47e-07!2|ontology_enrichment_uberon_v019=UBERON:0001896;1.71e-14;3!UBERON:0002240;1.71e-14;3!UBERON:0001723;1.71e-14;3!UBERON:0005174;1.71e-14;3!UBERON:0001033;1.71e-14;3!UBERON:0005290;1.71e-14;3!UBERON:0001137;1.71e-14;3!UBERON:0004733;3.36e-14;12!UBERON:0002028;3.36e-14;12!UBERON:0004732;3.43e-13;13!UBERON:0002037;6.55e-08;6!UBERON:0002298;6.55e-08;6|ontology_enrichment_uberon_v019_2=UBERON:0003076,1.78e-24,15;UBERON:0003057,1.78e-24,15;UBERON:0001896,1.40e-14,3;UBERON:0005290,1.40e-14,3;UBERON:0010096,1.40e-14,3;UBERON:0002240,1.83e-14,3;UBERON:0005174,1.83e-14,3;UBERON:0001137,1.83e-14,3;UBERON:0001723,2.09e-14,3;UBERON:0001033,2.09e-14,3;UBERON:0010056,2.09e-14,3;UBERON:0004733,2.94e-14,12;UBERON:0002028,2.94e-14,12;UBERON:0007277,2.94e-14,12;UBERON:0004732,3.03e-13,13;UBERON:0002298,5.92e-08,6;UBERON:0002037,6.34e-08,6;UBERON:0006215,6.34e-08,6;UBERON:0001049,4.78e-07,56;UBERON:0005068,4.78e-07,56;UBERON:0006241,4.78e-07,56;UBERON:0007135,4.78e-07,56|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1837 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3057 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=133bp_to_ENST00000315456_5end | |||
|coexpression_cluster_id=C1005 | |||
|description=CAGE_peak_18_at_DTNA_5end | |||
|id=chr18:32073414..32073417,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002553;6.62e-41;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002553,6.62e-41,1 | |||
|ontology_enrichment_development_v019=UBERON:0006241;1.71e-14;3!UBERON:0006215;1.71e-14;3!UBERON:0003057;1.71e-14;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!3.73e-54!57;UBERON:0005068!3.73e-54!57;UBERON:0006241!3.73e-54!57;UBERON:0007135!3.73e-54!57;UBERON:0001017!1.25e-51!82;UBERON:0005743!1.98e-51!86;UBERON:0000073!7.13e-51!94;UBERON:0001016!7.13e-51!94;UBERON:0003075!5.02e-47!86;UBERON:0007284!5.02e-47!86;UBERON:0007023!6.20e-47!115;UBERON:0002616!2.57e-45!59;UBERON:0000955!1.19e-44!69;UBERON:0006238!1.19e-44!69;UBERON:0002346!1.81e-44!90;UBERON:0002020!4.35e-35!34;UBERON:0003528!4.35e-35!34;UBERON:0001893!6.53e-35!34;UBERON:0004121!5.00e-34!169;UBERON:0002780!6.97e-34!41;UBERON:0001890!6.97e-34!41;UBERON:0006240!6.97e-34!41;UBERON:0000924!5.87e-33!173;UBERON:0006601!5.87e-33!173;UBERON:0003080!6.14e-33!42;UBERON:0002791!8.48e-33!33;UBERON:0001869!1.04e-30!32;UBERON:0000033!1.34e-30!123;UBERON:0000153!1.09e-28!129;UBERON:0007811!1.09e-28!129;UBERON:0003056!5.83e-27!61;UBERON:0003076!5.28e-23!15;UBERON:0003057!5.28e-23!15;UBERON:0002619!5.89e-22!22;UBERON:0001950!7.21e-21!20;UBERON:0002308!8.22e-20!9;UBERON:0000125!8.22e-20!9;UBERON:0004733!2.46e-19!12;UBERON:0002028!2.46e-19!12;UBERON:0007277!2.46e-19!12;UBERON:0000956!5.16e-19!25;UBERON:0000203!5.16e-19!25;UBERON:0002298!5.39e-18!8;UBERON:0004732!1.06e-17!13;UBERON:0002420!2.57e-15!9;UBERON:0007245!2.57e-15!9;UBERON:0010009!2.57e-15!9;UBERON:0010011!2.57e-15!9;UBERON:0000454!2.57e-15!9;UBERON:0000025!4.16e-15!194;UBERON:0009663!9.90e-15!7;UBERON:0004111!2.15e-13!241;UBERON:0000477!3.04e-13!286;UBERON:0001871!1.63e-12!7;UBERON:0000369!1.65e-12!4;UBERON:0002435!1.65e-12!4;UBERON:0000204!1.65e-12!4;UBERON:0010082!1.65e-12!4;UBERON:0000064!5.14e-12!219;UBERON:0000200!9.77e-12!6;UBERON:0002680!1.46e-11!9;UBERON:0001895!1.46e-11!9;UBERON:0010092!1.46e-11!9;UBERON:0000483!1.68e-11!309;UBERON:0000119!2.81e-11!312;UBERON:0001896!1.99e-10!3;UBERON:0005290!1.99e-10!3;UBERON:0010096!1.99e-10!3;UBERON:0000475!2.24e-10!365;UBERON:0000988!9.52e-10!3;UBERON:0005383!9.80e-10!3;UBERON:0005382!9.80e-10!3;UBERON:0006331!3.62e-09!3;UBERON:0002771!4.05e-09!3;UBERON:0000923!2.69e-08!604;UBERON:0005291!2.69e-08!604;UBERON:0006598!2.69e-08!604;UBERON:0002532!2.69e-08!604;UBERON:0002050!2.94e-08!605;UBERON:0005423!2.94e-08!605;UBERON:0000922!5.46e-08!612;UBERON:0000062!7.78e-08!511;UBERON:0000481!1.56e-07!347;UBERON:0001873!1.99e-07!2;UBERON:0010122!1.99e-07!2;UBERON:0000467!6.58e-07!625;UBERON:0000480!7.13e-07!626;UBERON:0002148!7.47e-07!2;UBERON:0009662!7.47e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0001896;1.71e-14;3!UBERON:0002240;1.71e-14;3!UBERON:0001723;1.71e-14;3!UBERON:0005174;1.71e-14;3!UBERON:0001033;1.71e-14;3!UBERON:0005290;1.71e-14;3!UBERON:0001137;1.71e-14;3!UBERON:0004733;3.36e-14;12!UBERON:0002028;3.36e-14;12!UBERON:0004732;3.43e-13;13!UBERON:0002037;6.55e-08;6!UBERON:0002298;6.55e-08;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003076,1.78e-24,15;UBERON:0003057,1.78e-24,15;UBERON:0001896,1.40e-14,3;UBERON:0005290,1.40e-14,3;UBERON:0010096,1.40e-14,3;UBERON:0002240,1.83e-14,3;UBERON:0005174,1.83e-14,3;UBERON:0001137,1.83e-14,3;UBERON:0001723,2.09e-14,3;UBERON:0001033,2.09e-14,3;UBERON:0010056,2.09e-14,3;UBERON:0004733,2.94e-14,12;UBERON:0002028,2.94e-14,12;UBERON:0007277,2.94e-14,12;UBERON:0004732,3.03e-13,13;UBERON:0002298,5.92e-08,6;UBERON:0002037,6.34e-08,6;UBERON:0006215,6.34e-08,6;UBERON:0001049,4.78e-07,56;UBERON:0005068,4.78e-07,56;UBERON:0006241,4.78e-07,56;UBERON:0007135,4.78e-07,56 | |||
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|short_description=p18@DTNA | |||
}} |
Revision as of 17:16, 11 September 2013
Short description: | p18@DTNA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_18_at_DTNA_5end |
Coexpression cluster: | C1005_nonsmall_cerebellum_spinal_medulla_locus_small_thalamus |
Association with transcript: | 133bp_to_ENST00000315456_5end |
EntrezGene: | DTNA |
HGNC: | 3057 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lung fibroblast | 6.62e-41 | 1 |
Ontology term | p-value | n |
---|---|---|
posterior neural tube | 1.78e-24 | 15 |
chordal neural plate | 1.78e-24 | 15 |
medulla oblongata | 1.40e-14 | 3 |
myelencephalon | 1.40e-14 | 3 |
future myelencephalon | 1.40e-14 | 3 |
spinal cord | 1.83e-14 | 3 |
dorsal region element | 1.83e-14 | 3 |
dorsum | 1.83e-14 | 3 |
tongue | 2.09e-14 | 3 |
gustatory system | 2.09e-14 | 3 |
future tongue | 2.09e-14 | 3 |
segmental subdivision of hindbrain | 2.94e-14 | 12 |
hindbrain | 2.94e-14 | 12 |
presumptive hindbrain | 2.94e-14 | 12 |
segmental subdivision of nervous system | 3.03e-13 | 13 |
brainstem | 5.92e-08 | 6 |
cerebellum | 6.34e-08 | 6 |
rhombic lip | 6.34e-08 | 6 |
neural tube | 4.78e-07 | 56 |
neural rod | 4.78e-07 | 56 |
future spinal cord | 4.78e-07 | 56 |
neural keel | 4.78e-07 | 56 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.