FFCP PHASE1:Hg19::chr17:76354695..76354708,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=9021|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=19391|TSSclassifier=N|UniProt=O14543,Q5U0H7,Q6FI39|association_with_transcript=467bp_to_AB006967,AF159854,BT019544,CR536497,CR541694_5end|coexpression_cluster_id=C0|description=CAGE_peak_5_at_SOCS3_5end|id=chr17:76354695..76354708,-|ontology_enrichment_celltype=CL:0002057!9.35e-26!42;CL:0000860!1.21e-25!45;CL:0000766!1.17e-19!76;CL:0002009!9.23e-18!65;CL:0000557!1.01e-17!71;CL:0002194!1.07e-16!63;CL:0000576!1.07e-16!63;CL:0000040!1.07e-16!63;CL:0000559!1.07e-16!63;CL:0000839!3.74e-16!70;CL:0000738!3.84e-15!140;CL:0002031!1.14e-11!124;CL:0002087!1.32e-11!119;CL:0000763!8.62e-10!112;CL:0000049!8.62e-10!112;CL:0000037!3.63e-08!172;CL:0000566!3.63e-08!172;CL:0002320!5.27e-08!365;CL:0000988!6.08e-08!182;CL:0002032!1.19e-07!165;CL:0000837!1.19e-07!165;CL:0000134!4.30e-07!358|ontology_enrichment_celltype_v019=CL:0000860;1.02e-44;33!CL:0002057;1.02e-44;33!CL:0000473;1.18e-33;39!CL:0000234;1.18e-33;39!CL:0000576;9.57e-25;48!CL:0000766;3.62e-20;69!CL:0000763;2.00e-10;100!CL:0002087;2.86e-09;104!CL:0000775;1.91e-08;3!CL:0000094;1.43e-07;8!CL:0000738;3.27e-07;136!CL:0000624;8.04e-07;6|ontology_enrichment_celltype_v019_2=CL:0000860,3.28e-46,42;CL:0002057,3.28e-46,42;CL:0000473,4.10e-42,48;CL:0000234,4.10e-42,48;CL:0000766,3.30e-39,72;CL:0000557,2.79e-33,67;CL:0002009,6.83e-33,61;CL:0002194,7.10e-32,59;CL:0000576,7.10e-32,59;CL:0000040,7.10e-32,59;CL:0000559,7.10e-32,59;CL:0000839,1.24e-31,66;CL:0000738,2.61e-26,136;CL:0000763,2.83e-24,108;CL:0000049,2.83e-24,108;CL:0002087,7.89e-21,115;CL:0002031,8.33e-21,120;CL:0000037,5.27e-19,168;CL:0000988,2.00e-18,177;CL:0002032,4.42e-18,161;CL:0000837,4.42e-18,161;CL:0002320,2.21e-15,361;CL:0000134,1.80e-14,354;CL:0000048,3.11e-13,427;CL:0000723,8.11e-13,433;CL:0000034,2.79e-12,441;CL:0000219,7.81e-12,386;CL:0000775,1.37e-08,3;CL:0000094,1.27e-07,8;CL:0000624,6.68e-07,6|ontology_enrichment_development_v019=CL:0002057;1.06e-34;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!1.26e-17!80;UBERON:0001474!9.17e-17!86;UBERON:0004765!2.37e-16!101;UBERON:0001434!2.37e-16!101;UBERON:0002390!1.76e-14!102;UBERON:0003061!1.76e-14!102;UBERON:0002193!2.91e-13!112;UBERON:0002405!1.75e-12!115;UBERON:0002204!2.17e-10!167;UBERON:0002384!3.07e-08!375|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.14e-32,76;UBERON:0001474,4.74e-29,82;UBERON:0004765,2.44e-27,90;UBERON:0002390,6.88e-26,98;UBERON:0003061,6.88e-26,98;UBERON:0001434,3.84e-25,100;UBERON:0002405,1.80e-24,93;UBERON:0002193,1.49e-22,108;UBERON:0002204,1.28e-16,167;UBERON:0002384,1.56e-14,371;UBERON:0003081,1.33e-12,203;UBERON:0000926,8.95e-08,315;UBERON:0004120,8.95e-08,315;UBERON:0006603,8.95e-08,315|phase1_expression=0,0.214100523890983,0,0,0.446961094427288,0,0,0,0,0,0,0,0.263766978228454,0.495065411840187,1.65698687863958,1.34465029290355,0,1.46062018077475,0,0.123121058076788,0.204000691244253,0,0,0.684372125364421,0.627713197974014,0,0,0,1.18009283054671,0,0.464448369948228,0,0,0.369754010166788,0,0,0,1.10799081706375,2.00544447470142,2.60413044859022,0,0,0,0.436194716338694,0.377875943688809,0.242584061187816,2.32429036905685,0.822335776043652,2.78735733805593,12.9461576544968,6.14785695669842,8.98632473576624,9.3081333798887,5.80936215225443,12.1883837934908,1.12945403725563,1.09162460023138,0.674170453335254,18.0589496498833,4.49300637906531,7.67204550958849,3.29851300186716,3.78980949481101,2.55734850319616,11.0279510678862,6.24123747160254,6.22822248995575,8.54245461872927,5.73631210262222,9.1219314776149,6.05399502633369,2.94622108790052,5.06339819905415,0.633765858935825,0,0.209658645508376,1.01095768031846,0.750884464207532,0.16072558669708,0.285012743741249,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,0,0.393419540227666,4.71612915298998,2.67281948699362,0.334372990781356,1.30368906653436,0.946895611469467,0,0.334231370655521,1.47302953737419,0.221533894583621,0.270803863765016,0.512365278902701,0.520237390239513,0,0,0,1.4828656316206,0.535081656179426,2.09071047609954,0.113309342697566,0.383220493601921,0.34362744548263,0.759059076058509,0,0.651083453856419,0,0,0,0,0,0,0.403213486449465,0.534880391567015,0.144824403882799,0,1.34140171940727,0,0,0,0.869079113764942,0,0,0.0945348171640679,0.665188192387692,0.263504357079378,0.0654895377488563,0,0,0,0,0.26591592103773,0.238490624305342,0.571994910780128,0,0,0,0,0,0,0,0,0,0,0,0,0.760272105718513,0.488124115096339,0,0.81014194788176,0.0892997282840798,0,0,0,0,0.366403487860815,1.31780417436063,0,0,0.496971951695318,0.12663051166458,0.132409180813219,0.286836620748814,0,0,1.06748995729705,0,0,0.269421344139376,0,0.151357427644931,1.72852777344,0,0,0,0,0,0.485618833104395,0,0,0.245668634623536,0.103325781175765,0,0.247266929278557,0,0.718618141816238,0,0.125118519871964,0,0,0.30648779579902,0.150238058906597,0,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591026,0|short_description=p5@SOCS3}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=9021 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=19391 | |||
|TSSclassifier=N | |||
|UniProt=O14543,Q5U0H7,Q6FI39 | |||
|association_with_transcript=467bp_to_AB006967,AF159854,BT019544,CR536497,CR541694_5end | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_5_at_SOCS3_5end | |||
|id=chr17:76354695..76354708,- | |||
|ontology_enrichment_celltype=CL:0002057!9.35e-26!42;CL:0000860!1.21e-25!45;CL:0000766!1.17e-19!76;CL:0002009!9.23e-18!65;CL:0000557!1.01e-17!71;CL:0002194!1.07e-16!63;CL:0000576!1.07e-16!63;CL:0000040!1.07e-16!63;CL:0000559!1.07e-16!63;CL:0000839!3.74e-16!70;CL:0000738!3.84e-15!140;CL:0002031!1.14e-11!124;CL:0002087!1.32e-11!119;CL:0000763!8.62e-10!112;CL:0000049!8.62e-10!112;CL:0000037!3.63e-08!172;CL:0000566!3.63e-08!172;CL:0002320!5.27e-08!365;CL:0000988!6.08e-08!182;CL:0002032!1.19e-07!165;CL:0000837!1.19e-07!165;CL:0000134!4.30e-07!358 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.02e-44;33!CL:0002057;1.02e-44;33!CL:0000473;1.18e-33;39!CL:0000234;1.18e-33;39!CL:0000576;9.57e-25;48!CL:0000766;3.62e-20;69!CL:0000763;2.00e-10;100!CL:0002087;2.86e-09;104!CL:0000775;1.91e-08;3!CL:0000094;1.43e-07;8!CL:0000738;3.27e-07;136!CL:0000624;8.04e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.28e-46,42;CL:0002057,3.28e-46,42;CL:0000473,4.10e-42,48;CL:0000234,4.10e-42,48;CL:0000766,3.30e-39,72;CL:0000557,2.79e-33,67;CL:0002009,6.83e-33,61;CL:0002194,7.10e-32,59;CL:0000576,7.10e-32,59;CL:0000040,7.10e-32,59;CL:0000559,7.10e-32,59;CL:0000839,1.24e-31,66;CL:0000738,2.61e-26,136;CL:0000763,2.83e-24,108;CL:0000049,2.83e-24,108;CL:0002087,7.89e-21,115;CL:0002031,8.33e-21,120;CL:0000037,5.27e-19,168;CL:0000988,2.00e-18,177;CL:0002032,4.42e-18,161;CL:0000837,4.42e-18,161;CL:0002320,2.21e-15,361;CL:0000134,1.80e-14,354;CL:0000048,3.11e-13,427;CL:0000723,8.11e-13,433;CL:0000034,2.79e-12,441;CL:0000219,7.81e-12,386;CL:0000775,1.37e-08,3;CL:0000094,1.27e-07,8;CL:0000624,6.68e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002057;1.06e-34;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.26e-17!80;UBERON:0001474!9.17e-17!86;UBERON:0004765!2.37e-16!101;UBERON:0001434!2.37e-16!101;UBERON:0002390!1.76e-14!102;UBERON:0003061!1.76e-14!102;UBERON:0002193!2.91e-13!112;UBERON:0002405!1.75e-12!115;UBERON:0002204!2.17e-10!167;UBERON:0002384!3.07e-08!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.14e-32,76;UBERON:0001474,4.74e-29,82;UBERON:0004765,2.44e-27,90;UBERON:0002390,6.88e-26,98;UBERON:0003061,6.88e-26,98;UBERON:0001434,3.84e-25,100;UBERON:0002405,1.80e-24,93;UBERON:0002193,1.49e-22,108;UBERON:0002204,1.28e-16,167;UBERON:0002384,1.56e-14,371;UBERON:0003081,1.33e-12,203;UBERON:0000926,8.95e-08,315;UBERON:0004120,8.95e-08,315;UBERON:0006603,8.95e-08,315 | |||
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| |||
|short_description=p5@SOCS3 | |||
}} |
Revision as of 16:03, 11 September 2013
Short description: | p5@SOCS3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_SOCS3_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 467bp_to_AB006967, AF159854, BT019544, CR536497, CR541694_5end |
EntrezGene: | SOCS3 |
HGNC: | 19391 |
UniProt: | O14543Q5U0H7Q6FI39 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.28e-46 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.28e-46 | 42 |
defensive cell | 4.10e-42 | 48 |
phagocyte | 4.10e-42 | 48 |
myeloid leukocyte | 3.30e-39 | 72 |
granulocyte monocyte progenitor cell | 2.79e-33 | 67 |
macrophage dendritic cell progenitor | 6.83e-33 | 61 |
monopoietic cell | 7.10e-32 | 59 |
monocyte | 7.10e-32 | 59 |
monoblast | 7.10e-32 | 59 |
promonocyte | 7.10e-32 | 59 |
myeloid lineage restricted progenitor cell | 1.24e-31 | 66 |
leukocyte | 2.61e-26 | 136 |
myeloid cell | 2.83e-24 | 108 |
common myeloid progenitor | 2.83e-24 | 108 |
nongranular leukocyte | 7.89e-21 | 115 |
hematopoietic lineage restricted progenitor cell | 8.33e-21 | 120 |
hematopoietic stem cell | 5.27e-19 | 168 |
hematopoietic cell | 2.00e-18 | 177 |
hematopoietic oligopotent progenitor cell | 4.42e-18 | 161 |
hematopoietic multipotent progenitor cell | 4.42e-18 | 161 |
connective tissue cell | 2.21e-15 | 361 |
mesenchymal cell | 1.80e-14 | 354 |
multi fate stem cell | 3.11e-13 | 427 |
somatic stem cell | 8.11e-13 | 433 |
stem cell | 2.79e-12 | 441 |
motile cell | 7.81e-12 | 386 |
neutrophil | 1.37e-08 | 3 |
granulocyte | 1.27e-07 | 8 |
CD4-positive, alpha-beta T cell | 6.68e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.14e-32 | 76 |
bone element | 4.74e-29 | 82 |
skeletal element | 2.44e-27 | 90 |
hematopoietic system | 6.88e-26 | 98 |
blood island | 6.88e-26 | 98 |
skeletal system | 3.84e-25 | 100 |
immune system | 1.80e-24 | 93 |
hemolymphoid system | 1.49e-22 | 108 |
musculoskeletal system | 1.28e-16 | 167 |
connective tissue | 1.56e-14 | 371 |
lateral plate mesoderm | 1.33e-12 | 203 |
mesoderm | 8.95e-08 | 315 |
mesoderm-derived structure | 8.95e-08 | 315 |
presumptive mesoderm | 8.95e-08 | 315 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.