FFCP PHASE1:Hg19::chr17:33469299..33469328,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=54475|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=19889|TSSclassifier=S|UniProt=Q9NVX2,F5GZ79|association_with_transcript=0bp_to_ENST00000360831,ENST00000442241,ENST00000473567,ENST00000479807,ENST00000537697,NM_001014445,NM_018096,uc002hiy.1,uc002hiz.1_5end|coexpression_cluster_id=C2400|description=CAGE_peak_1_at_NLE1_5end|id=chr17:33469299..33469328,-|ontology_enrichment_celltype=CL:0000066!1.11e-22!254;CL:0000012!1.61e-18!682;CL:0000548!4.49e-18!679;CL:0000004!4.49e-18!679;CL:0000255!4.49e-18!679;CL:0002321!5.58e-17!248;CL:0000220!2.12e-16!246;CL:0000003!1.75e-12!722;CL:0000144!4.87e-08!625;CL:0000222!1.61e-07!119;CL:0000076!2.09e-07!62;CL:0000055!6.08e-07!180|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=CL:0000066,6.25e-23,253;CL:0002321,3.79e-17,250;CL:0000222,1.26e-07,121;CL:0000076,1.85e-07,63|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:162!4.53e-19!235;DOID:14566!4.62e-19!239;DOID:0050687!6.24e-12!143;DOID:305!8.97e-10!106;DOID:2531!3.61e-09!51;DOID:0060083!3.61e-09!51;DOID:0050686!1.29e-08!137;DOID:1240!7.28e-07!39|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=DOID:162,4.51e-19,235;DOID:14566,4.60e-19,239;DOID:0050687,6.22e-12,143;DOID:305,8.95e-10,106;DOID:2531,3.61e-09,51;DOID:0060083,3.61e-09,51;DOID:0050686,1.29e-08,137;DOID:1240,7.27e-07,39|ontology_enrichment_uberon=UBERON:0003104!3.34e-10!238;UBERON:0009142!3.34e-10!238;UBERON:0000072!5.55e-08!46;UBERON:0008947!2.41e-07!38;UBERON:0003258!2.41e-07!38|ontology_enrichment_uberon_v019=UBERON:0000072;3.13e-08;37!UBERON:0006554;4.89e-07;30!UBERON:0001008;4.89e-07;30|ontology_enrichment_uberon_v019_2=UBERON:0002100,4.90e-08,199;UBERON:0000072,1.18e-07,47;UBERON:0008947,2.51e-07,38;UBERON:0003258,2.51e-07,38;UBERON:0000490,4.32e-07,148;UBERON:0005177,5.80e-07,101;UBERON:0007503,8.21e-07,78|phase1_expression=3.81524596468169,3.8538094300377,3.38290569830331,11.0080628188443,9.38618298297304,3.48935409640147,20.2639902534648,5.68547886084148,10.9697963843932,15.2355040630935,88.6207483324983,8.95609625733706,9.23184423799587,7.4259811776028,9.27912652038164,6.72325146451775,9.04041792035965,10.2243412654232,7.80692478064811,13.0508321561395,22.6440767281121,17.5534644027729,5.15224776835902,8.75996320466459,7.28147309649856,9.398848906998,10.2625736812432,12.4363034475613,3.54027849164014,2.68680578668049,2.16742572642506,38.6156914281149,43.6748582228463,28.8408127930094,18.2822593369512,16.9181386660032,11.7440175733939,3.32397245119126,2.00544447470142,1.95309783644267,1.79132379391939,2.59114932815184,1.03030227053675,0.726991193897824,0.377875943688809,0.485168122375632,0.464858073811369,0.822335776043652,0.309706370895104,0.863077176966451,0.512321413058201,1.6553756092201,0,0,2.70852973188684,0.564727018627814,1.91034305040492,0,0,0.962787081228281,0,0.989553900560148,0.997318288108159,0,0.290209238628584,0.56738522469114,0.622822248995575,0.251248665256743,1.5644487552606,0.434377689410233,0.605399502633369,0,0,3.80259515361495,3.4016687994407,2.51590374610051,1.79725809834392,1.80212271409808,1.44653028027372,2.56511469367124,2.18808344918999,2.55729815270488,8.79981222306614,5.46138611262132,5.33705552318133,3.41384178053206,6.00593980554019,5.17277195959035,6.61044872784862,5.72432252721218,3.98449078376614,4.11066032559657,3.82273228125229,6.60856642895129,6.72610275577843,16.8565814256049,5.31116379307349,5.89516144123747,6.5792479679843,2.50779743086017,5.86660079940463,9.9424039204294,13.6378709885538,3.23090324967003,4.41908861212256,9.74749136167933,2.97884250141517,7.55738786381483,3.64166173167659,11.0173396084463,6.07970039128866,5.506258628966,9.04548035288569,7.22360235842225,4.18142095219907,6.11870450566857,4.59864592322305,4.81078423675682,2.78321661221453,4.45991580053735,5.85975108470777,8.55406840003537,8.73335690651082,7.42322344695627,8.74515085866421,4.2619905367923,3.28451198768419,6.04820229674197,4.54648332831962,5.64815175142916,7.31420598941885,10.7312137552582,9.46182957642124,5.78302643815306,10.5280961233537,9.99440980829684,3.9764297352555,7.78615792484217,8.03545945894577,11.0864698731282,8.7834785693126,4.32230949142452,24.7720796038929,19.2807910247903,0.97364218096405,1.0447784237956,1.86141144726411,1.66943437013739,3.43196946468077,2.60020250930695,16.8948046261699,8.60234595106124,13.8856200643038,11.8714667804042,8.38998872419812,15.4066103486438,17.7645721556289,5.68516870172524,4.62496141492723,6.35969164252873,13.2933674646019,17.4862584315258,12.6912269925048,15.4418493745265,12.1521292182264,6.69747962130598,9.87929239555147,9.45936436059907,19.9311628705648,26.5794384679076,13.5569290508501,0,0,20.4964204506991,3.97577561356255,6.96467814155189,4.8991396900891,9.17877186396204,6.38403087957043,11.7742296029885,12.8098794875646,8.88003174301776,2.8008993185979,9.0256150286691,8.50001896189985,9.08144565869588,3.45705554687999,20.6202860013741,11.862082919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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=54475 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19889 | |||
|TSSclassifier=S | |||
|UniProt=Q9NVX2,F5GZ79 | |||
|association_with_transcript=0bp_to_ENST00000360831,ENST00000442241,ENST00000473567,ENST00000479807,ENST00000537697,NM_001014445,NM_018096,uc002hiy.1,uc002hiz.1_5end | |||
|coexpression_cluster_id=C2400 | |||
|description=CAGE_peak_1_at_NLE1_5end | |||
|id=chr17:33469299..33469328,- | |||
|ontology_enrichment_celltype=CL:0000066!1.11e-22!254;CL:0000012!1.61e-18!682;CL:0000548!4.49e-18!679;CL:0000004!4.49e-18!679;CL:0000255!4.49e-18!679;CL:0002321!5.58e-17!248;CL:0000220!2.12e-16!246;CL:0000003!1.75e-12!722;CL:0000144!4.87e-08!625;CL:0000222!1.61e-07!119;CL:0000076!2.09e-07!62;CL:0000055!6.08e-07!180 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,6.25e-23,253;CL:0002321,3.79e-17,250;CL:0000222,1.26e-07,121;CL:0000076,1.85e-07,63 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!4.53e-19!235;DOID:14566!4.62e-19!239;DOID:0050687!6.24e-12!143;DOID:305!8.97e-10!106;DOID:2531!3.61e-09!51;DOID:0060083!3.61e-09!51;DOID:0050686!1.29e-08!137;DOID:1240!7.28e-07!39 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,4.51e-19,235;DOID:14566,4.60e-19,239;DOID:0050687,6.22e-12,143;DOID:305,8.95e-10,106;DOID:2531,3.61e-09,51;DOID:0060083,3.61e-09,51;DOID:0050686,1.29e-08,137;DOID:1240,7.27e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0003104!3.34e-10!238;UBERON:0009142!3.34e-10!238;UBERON:0000072!5.55e-08!46;UBERON:0008947!2.41e-07!38;UBERON:0003258!2.41e-07!38 | |||
|ontology_enrichment_uberon_v019=UBERON:0000072;3.13e-08;37!UBERON:0006554;4.89e-07;30!UBERON:0001008;4.89e-07;30 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,4.90e-08,199;UBERON:0000072,1.18e-07,47;UBERON:0008947,2.51e-07,38;UBERON:0003258,2.51e-07,38;UBERON:0000490,4.32e-07,148;UBERON:0005177,5.80e-07,101;UBERON:0007503,8.21e-07,78 | |||
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| |||
|short_description=p1@NLE1 | |||
}} |
Revision as of 13:03, 11 September 2013
Short description: | p1@NLE1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_NLE1_5end |
Coexpression cluster: | C2400_Alveolar_embryonic_Mesenchymal_Renal_Smooth_acute_granulocyte |
Association with transcript: | 0bp_to_ENST00000360831, ENST00000442241, ENST00000473567, ENST00000479807, ENST00000537697, NM_001014445, NM_018096, uc002hiy.1, uc002hiz.1_5end |
EntrezGene: | NLE1 |
HGNC: | 19889 |
UniProt: | Q9NVX2F5GZ79 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 6.25e-23 | 253 |
embryonic cell | 3.79e-17 | 250 |
mesodermal cell | 1.26e-07 | 121 |
squamous epithelial cell | 1.85e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
trunk | 4.90e-08 | 199 |
segment of respiratory tract | 1.18e-07 | 47 |
respiratory primordium | 2.51e-07 | 38 |
endoderm of foregut | 2.51e-07 | 38 |
unilaminar epithelium | 4.32e-07 | 148 |
trunk region element | 5.80e-07 | 101 |
epithelial vesicle | 8.21e-07 | 78 |
Ontology term | p-value | n |
---|---|---|
cancer | 4.51e-19 | 235 |
disease of cellular proliferation | 4.60e-19 | 239 |
cell type cancer | 6.22e-12 | 143 |
carcinoma | 8.95e-10 | 106 |
hematologic cancer | 3.61e-09 | 51 |
immune system cancer | 3.61e-09 | 51 |
organ system cancer | 1.29e-08 | 137 |
leukemia | 7.27e-07 | 39 |
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