FFCP PHASE1:Hg19::chr17:18266713..18266756,-: Difference between revisions
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{{FFCP | 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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6470 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10850 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000352886_5end | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_2_at_SHMT1_5end | |||
|id=chr17:18266713..18266756,- | |||
|ontology_enrichment_celltype=CL:0000066!1.61e-18!254 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.95e-18,253 | |||
|ontology_enrichment_development_v019=UBERON:0006595;7.07e-08;86!UBERON:0008947;2.24e-07;29 | |||
|ontology_enrichment_disease=DOID:305!9.93e-14!106;DOID:0050687!1.71e-07!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,6.89e-14,106;DOID:0050687,1.24e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0001007!6.16e-15!155;UBERON:0001555!6.16e-15!155;UBERON:0007026!6.16e-15!155;UBERON:0004921!8.96e-15!129;UBERON:0004185!8.96e-15!129;UBERON:0000064!1.08e-13!219;UBERON:0001041!2.25e-13!98;UBERON:0000466!3.59e-13!126;UBERON:0001048!4.04e-13!168;UBERON:0004119!5.47e-13!169;UBERON:0000925!5.47e-13!169;UBERON:0006595!5.47e-13!169;UBERON:0000063!5.52e-13!97;UBERON:0000062!7.96e-13!511;UBERON:0000077!1.13e-12!130;UBERON:0005177!1.43e-12!107;UBERON:0000481!2.65e-12!347;UBERON:0009569!2.73e-10!113;UBERON:0005172!2.66e-09!55;UBERON:0005173!2.66e-09!55;UBERON:0003104!2.71e-09!238;UBERON:0009142!2.71e-09!238;UBERON:0000464!2.90e-09!104;UBERON:0008947!9.32e-09!38;UBERON:0003258!9.32e-09!38;UBERON:0002417!1.11e-08!61;UBERON:0000916!1.11e-08!61;UBERON:0000475!1.32e-08!365;UBERON:0001004!4.87e-08!72;UBERON:0000072!7.94e-08!46;UBERON:0000058!1.74e-07!26;UBERON:0000468!2.23e-07!659;UBERON:0003887!3.04e-07!21;UBERON:0000065!3.13e-07!53;UBERON:0000477!3.75e-07!286;UBERON:0001737!3.76e-07!9;UBERON:0000489!5.04e-07!32 | |||
|ontology_enrichment_uberon_v019=UBERON:0000072;7.67e-08;37!UBERON:0001737;2.97e-07;9!UBERON:0001557;2.97e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004921,2.60e-17,118;UBERON:0001007,1.19e-16,145;UBERON:0001555,1.19e-16,145;UBERON:0007026,1.19e-16,145;UBERON:0001041,2.45e-16,87;UBERON:0004119,1.07e-14,160;UBERON:0000925,1.07e-14,160;UBERON:0006595,1.07e-14,160;UBERON:0001048,2.61e-14,160;UBERON:0005177,5.48e-13,101;UBERON:0009569,5.91e-11,112;UBERON:0011216,1.32e-10,223;UBERON:0005172,4.12e-09,54;UBERON:0005173,4.12e-09,54;UBERON:0008947,6.65e-09,38;UBERON:0003258,6.65e-09,38;UBERON:0002417,1.69e-08,60;UBERON:0000916,1.69e-08,60;UBERON:0000072,2.88e-08,47;UBERON:0001004,6.26e-08,74;UBERON:0000065,1.23e-07,54;UBERON:0001737,3.52e-07,9;UBERON:0005911,7.43e-07,82 | |||
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|short_description=p2@SHMT1 | |||
}} |
Revision as of 12:30, 11 September 2013
Short description: | p2@SHMT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_SHMT1_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 0bp_to_ENST00000352886_5end |
EntrezGene: | SHMT1 |
HGNC: | 10850 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.95e-18 | 253 |
Ontology term | p-value | n |
---|---|---|
subdivision of digestive tract | 2.60e-17 | 118 |
digestive system | 1.19e-16 | 145 |
digestive tract | 1.19e-16 | 145 |
primitive gut | 1.19e-16 | 145 |
foregut | 2.45e-16 | 87 |
endoderm-derived structure | 1.07e-14 | 160 |
endoderm | 1.07e-14 | 160 |
presumptive endoderm | 1.07e-14 | 160 |
primordium | 2.61e-14 | 160 |
trunk region element | 5.48e-13 | 101 |
subdivision of trunk | 5.91e-11 | 112 |
organ system subdivision | 1.32e-10 | 223 |
abdomen element | 4.12e-09 | 54 |
abdominal segment element | 4.12e-09 | 54 |
respiratory primordium | 6.65e-09 | 38 |
endoderm of foregut | 6.65e-09 | 38 |
abdominal segment of trunk | 1.69e-08 | 60 |
abdomen | 1.69e-08 | 60 |
segment of respiratory tract | 2.88e-08 | 47 |
respiratory system | 6.26e-08 | 74 |
respiratory tract | 1.23e-07 | 54 |
larynx | 3.52e-07 | 9 |
endo-epithelium | 7.43e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 6.89e-14 | 106 |
cell type cancer | 1.24e-07 | 143 |
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