FFCP PHASE1:Hg19::chr16:67679069..67679109,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=146206|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=27089|TSSclassifier=S|UniProt=Q6F5E8,E7EW12|association_with_transcript=39bp_to_ENST00000334583,ENST00000398282,NM_001013838,uc002etn.2,uc010cel.1,uc010vjr.1_5end|coexpression_cluster_id=C18|description=CAGE_peak_2_at_RLTPR_5end|id=chr16:67679069..67679109,+|ontology_enrichment_celltype=CL:0000542!3.27e-41!53;CL:0000051!3.27e-41!53;CL:0000838!3.14e-40!52;CL:0000037!1.35e-30!172;CL:0000566!1.35e-30!172;CL:0000988!2.19e-30!182;CL:0000738!2.65e-29!140;CL:0002032!3.74e-26!165;CL:0000837!3.74e-26!165;CL:0002087!2.73e-25!119;CL:0002031!3.93e-22!124;CL:0000084!1.63e-20!25;CL:0000827!1.63e-20!25;CL:0000945!2.82e-18!24;CL:0000826!2.82e-18!24;CL:0000791!1.23e-17!18;CL:0000789!1.23e-17!18;CL:0002420!1.23e-17!18;CL:0002419!1.23e-17!18;CL:0000790!1.23e-17!18;CL:0000236!7.23e-13!14;CL:0000625!5.13e-11!11;CL:0000624!2.31e-07!6|ontology_enrichment_celltype_v019=CL:0000542;5.48e-36;53!CL:0000084;7.65e-30;25!CL:0000945;1.95e-28;24!CL:0000791;3.83e-27;18!CL:0000789;3.83e-27;18!CL:0002419;3.83e-27;18!CL:0000236;2.16e-18;13!CL:0000625;1.35e-16;11!CL:0000624;8.62e-11;6!CL:0002087;4.60e-10;104|ontology_enrichment_celltype_v019_2=CL:0000542,2.71e-63,53;CL:0000051,2.71e-63,53;CL:0000838,1.00e-61,52;CL:0000988,3.62e-33,177;CL:0000037,1.08e-32,168;CL:0000738,8.80e-31,136;CL:0002087,2.73e-30,115;CL:0000084,7.36e-30,25;CL:0000827,7.36e-30,25;CL:0000945,1.61e-28,24;CL:0000826,1.61e-28,24;CL:0000791,3.87e-27,18;CL:0000789,3.87e-27,18;CL:0002420,3.87e-27,18;CL:0002419,3.87e-27,18;CL:0000790,3.87e-27,18;CL:0002032,1.08e-26,161;CL:0000837,1.08e-26,161;CL:0002031,2.73e-23,120;CL:0000236,1.55e-19,14;CL:0000625,1.37e-16,11;CL:0000624,8.63e-11,6|ontology_enrichment_development_v019=CL:0000051;5.48e-36;53!CL:0000790;3.83e-27;18|ontology_enrichment_disease=DOID:2531!1.50e-07!51;DOID:0060083!1.50e-07!51;DOID:0060058!3.12e-07!10|ontology_enrichment_disease_v019=DOID:0060058;2.15e-07;10!DOID:2531;7.73e-07;51!DOID:0060083;7.73e-07;51|ontology_enrichment_disease_v019_2=DOID:2531,1.99e-09,51;DOID:0060083,1.99e-09,51;DOID:0060058,2.04e-07,10|ontology_enrichment_uberon=UBERON:0000178!5.41e-13!15;UBERON:0000179!5.41e-13!15;UBERON:0000463!5.41e-13!15;UBERON:0002390!3.77e-07!102;UBERON:0003061!3.77e-07!102;UBERON:0004177!6.26e-07!7|ontology_enrichment_uberon_v019=UBERON:0000178;8.86e-20;15!UBERON:0000179;8.86e-20;15!UBERON:0000463;8.86e-20;15!UBERON:0002390;9.24e-15;32!UBERON:0002193;7.87e-09;42|ontology_enrichment_uberon_v019_2=UBERON:0000178,9.77e-20,15;UBERON:0000179,9.77e-20,15;UBERON:0000463,9.77e-20,15;UBERON:0004177,4.42e-08,7;UBERON:0005057,4.42e-08,7;UBERON:0002370,1.76e-07,4;UBERON:0005058,1.76e-07,4;UBERON:0009113,1.76e-07,4;UBERON:0003295,1.76e-07,4;UBERON:0005562,1.76e-07,4|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.27915072188527,3.53032534634767,4.25038219093868,0.786728553697808,2.68680578668049,1.54816123316076,0,0,0,46.4028531476007,14.501261713717,8.51441274071057,0.553995408531877,3.20871115952227,2.82114131930607,0.895661896959697,1.6194683300949,1.28787783817093,0.145398238779565,0.377875943688809,0,0,0.411167888021826,0,0.28769239232215,0.256160706529101,0,0.344745680736619,0,0,0.376484679085209,0,0,0,0.962787081228281,0,0,0,0,0.290209238628584,0,0.622822248995575,0.251248665256743,1.0429658368404,0,0.605399502633369,0.368277635987565,0,0,0,0,0,0,0,0,0,0,21.1195493353587,12.561188059029,9.7846017924991,8.10787422876364,12.8126715851524,11.4950487990897,10.5767179645578,13.3567525634951,10.8150464130795,10.5702694086769,10.7036503875064,1.32171328579026,4.48406850385229,5.26768169550154,15.5400718389928,25.5456995786957,20.7657513989504,39.2888264168093,25.0960145307865,31.2475551784924,48.7066821019778,23.2847854890013,27.6929553026347,26.1409995608673,32.2256597880369,29.2048208974539,22.1100890851793,28.941071210247,30.3985019564433,28.9803085735052,29.8055991955741,23.5435928718948,28.2245914273437,25.4946021069524,18.7778041864941,21.3049016199231,21.5066738216577,15.9282707162048,14.9749194386976,7.60361635558699,12.3471597643774,14.078527226986,26.2354525759926,16.3376303910372,11.4957919568947,10.2819439044614,10.1627274397733,12.8893719455691,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.0654895377488563,0,0,0,0.348259474598534,0.398873881556595,9.06264372360299,2.85997455390064,14.486842551853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.853815942907168,0.927708378250397,1.16193942869518,0.621966330092223,0.252320850875628,1.09493207722749,0,0,0,0,0,0,0.168584690078102,0.241011029883482,0,0,0,0,0,0,0,0,0,0,0,0,0,19.8658394736593,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0,0,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.6743875672103,7.09310736726938,9.27198571895924,8.8556695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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=146206 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=27089 | |||
|TSSclassifier=S | |||
|UniProt=Q6F5E8,E7EW12 | |||
|association_with_transcript=39bp_to_ENST00000334583,ENST00000398282,NM_001013838,uc002etn.2,uc010cel.1,uc010vjr.1_5end | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_2_at_RLTPR_5end | |||
|id=chr16:67679069..67679109,+ | |||
|ontology_enrichment_celltype=CL:0000542!3.27e-41!53;CL:0000051!3.27e-41!53;CL:0000838!3.14e-40!52;CL:0000037!1.35e-30!172;CL:0000566!1.35e-30!172;CL:0000988!2.19e-30!182;CL:0000738!2.65e-29!140;CL:0002032!3.74e-26!165;CL:0000837!3.74e-26!165;CL:0002087!2.73e-25!119;CL:0002031!3.93e-22!124;CL:0000084!1.63e-20!25;CL:0000827!1.63e-20!25;CL:0000945!2.82e-18!24;CL:0000826!2.82e-18!24;CL:0000791!1.23e-17!18;CL:0000789!1.23e-17!18;CL:0002420!1.23e-17!18;CL:0002419!1.23e-17!18;CL:0000790!1.23e-17!18;CL:0000236!7.23e-13!14;CL:0000625!5.13e-11!11;CL:0000624!2.31e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000542;5.48e-36;53!CL:0000084;7.65e-30;25!CL:0000945;1.95e-28;24!CL:0000791;3.83e-27;18!CL:0000789;3.83e-27;18!CL:0002419;3.83e-27;18!CL:0000236;2.16e-18;13!CL:0000625;1.35e-16;11!CL:0000624;8.62e-11;6!CL:0002087;4.60e-10;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,2.71e-63,53;CL:0000051,2.71e-63,53;CL:0000838,1.00e-61,52;CL:0000988,3.62e-33,177;CL:0000037,1.08e-32,168;CL:0000738,8.80e-31,136;CL:0002087,2.73e-30,115;CL:0000084,7.36e-30,25;CL:0000827,7.36e-30,25;CL:0000945,1.61e-28,24;CL:0000826,1.61e-28,24;CL:0000791,3.87e-27,18;CL:0000789,3.87e-27,18;CL:0002420,3.87e-27,18;CL:0002419,3.87e-27,18;CL:0000790,3.87e-27,18;CL:0002032,1.08e-26,161;CL:0000837,1.08e-26,161;CL:0002031,2.73e-23,120;CL:0000236,1.55e-19,14;CL:0000625,1.37e-16,11;CL:0000624,8.63e-11,6 | |||
|ontology_enrichment_development_v019=CL:0000051;5.48e-36;53!CL:0000790;3.83e-27;18 | |||
|ontology_enrichment_disease=DOID:2531!1.50e-07!51;DOID:0060083!1.50e-07!51;DOID:0060058!3.12e-07!10 | |||
|ontology_enrichment_disease_v019=DOID:0060058;2.15e-07;10!DOID:2531;7.73e-07;51!DOID:0060083;7.73e-07;51 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,1.99e-09,51;DOID:0060083,1.99e-09,51;DOID:0060058,2.04e-07,10 | |||
|ontology_enrichment_uberon=UBERON:0000178!5.41e-13!15;UBERON:0000179!5.41e-13!15;UBERON:0000463!5.41e-13!15;UBERON:0002390!3.77e-07!102;UBERON:0003061!3.77e-07!102;UBERON:0004177!6.26e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;8.86e-20;15!UBERON:0000179;8.86e-20;15!UBERON:0000463;8.86e-20;15!UBERON:0002390;9.24e-15;32!UBERON:0002193;7.87e-09;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,9.77e-20,15;UBERON:0000179,9.77e-20,15;UBERON:0000463,9.77e-20,15;UBERON:0004177,4.42e-08,7;UBERON:0005057,4.42e-08,7;UBERON:0002370,1.76e-07,4;UBERON:0005058,1.76e-07,4;UBERON:0009113,1.76e-07,4;UBERON:0003295,1.76e-07,4;UBERON:0005562,1.76e-07,4 | |||
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| |||
|short_description=p2@RLTPR | |||
}} |
Revision as of 11:13, 11 September 2013
Short description: | p2@RLTPR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_RLTPR_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 39bp_to_ENST00000334583, ENST00000398282, NM_001013838, uc002etn.2, uc010cel.1, uc010vjr.1_5end |
EntrezGene: | RLTPR |
HGNC: | 27089 |
UniProt: | Q6F5E8E7EW12 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 2.71e-63 | 53 |
common lymphoid progenitor | 2.71e-63 | 53 |
lymphoid lineage restricted progenitor cell | 1.00e-61 | 52 |
hematopoietic cell | 3.62e-33 | 177 |
hematopoietic stem cell | 1.08e-32 | 168 |
leukocyte | 8.80e-31 | 136 |
nongranular leukocyte | 2.73e-30 | 115 |
T cell | 7.36e-30 | 25 |
pro-T cell | 7.36e-30 | 25 |
lymphocyte of B lineage | 1.61e-28 | 24 |
pro-B cell | 1.61e-28 | 24 |
mature alpha-beta T cell | 3.87e-27 | 18 |
alpha-beta T cell | 3.87e-27 | 18 |
immature T cell | 3.87e-27 | 18 |
mature T cell | 3.87e-27 | 18 |
immature alpha-beta T cell | 3.87e-27 | 18 |
hematopoietic oligopotent progenitor cell | 1.08e-26 | 161 |
hematopoietic multipotent progenitor cell | 1.08e-26 | 161 |
hematopoietic lineage restricted progenitor cell | 2.73e-23 | 120 |
B cell | 1.55e-19 | 14 |
CD8-positive, alpha-beta T cell | 1.37e-16 | 11 |
CD4-positive, alpha-beta T cell | 8.63e-11 | 6 |
Ontology term | p-value | n |
---|---|---|
blood | 9.77e-20 | 15 |
haemolymphatic fluid | 9.77e-20 | 15 |
organism substance | 9.77e-20 | 15 |
hemopoietic organ | 4.42e-08 | 7 |
immune organ | 4.42e-08 | 7 |
thymus | 1.76e-07 | 4 |
hemolymphoid system gland | 1.76e-07 | 4 |
thymic region | 1.76e-07 | 4 |
pharyngeal gland | 1.76e-07 | 4 |
thymus primordium | 1.76e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 1.99e-09 | 51 |
immune system cancer | 1.99e-09 | 51 |
lymphoma | 2.04e-07 | 10 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.