FFCP PHASE1:Hg19::chr15:55700856..55700916,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=|TSSclassifier=S|UniProt=|association_with_transcript=110bp_to_uc002ada.2_5end|description=CAGE_peak_1_at_uc002ada.2_5end|id=chr15:55700856..55700916,+|ontology_enrichment_celltype=CL:0000055!5.80e-22!180;CL:0000680!6.99e-12!57;CL:0000056!6.99e-12!57;CL:0000355!6.99e-12!57;CL:0000393!8.86e-11!60;CL:0000211!8.86e-11!60;CL:0000187!1.42e-10!54;CL:0000183!1.59e-10!59;CL:0000192!1.66e-09!42;CL:0000514!1.66e-09!42;CL:0000548!3.04e-08!679;CL:0000004!3.04e-08!679;CL:0000255!3.04e-08!679;CL:0000012!7.01e-08!682;CL:0000057!3.06e-07!75;CL:0000220!6.83e-07!246|ontology_enrichment_celltype_v019=CL:0000192;1.45e-08;43!CL:0000187;2.45e-07;55!CL:0000359;3.84e-07;32|ontology_enrichment_celltype_v019_2=CL:0000680,1.40e-13,58;CL:0000056,1.40e-13,58;CL:0000355,1.40e-13,58;CL:0000187,5.98e-12,55;CL:0000393,7.84e-12,61;CL:0000211,7.84e-12,61;CL:0000192,4.67e-11,43;CL:0000514,4.67e-11,43;CL:0000359,3.87e-07,32|ontology_enrichment_development_v019=CL:0000514;1.45e-08;43!CL:0000355;1.29e-07;58|ontology_enrichment_disease=DOID:14566!1.59e-11!239;DOID:162!7.57e-10!235;DOID:305!3.31e-07!106;DOID:193!8.14e-07!29|ontology_enrichment_disease_v019=DOID:2394;1.54e-08;14!DOID:193;2.34e-07;29!DOID:120;5.48e-07;27|ontology_enrichment_disease_v019_2=DOID:14566,2.40e-08,239;DOID:2394,2.96e-08,14;DOID:193,3.78e-07,29;DOID:162,9.50e-07,235;DOID:120,9.69e-07,27|ontology_enrichment_uberon=UBERON:0000914!7.16e-13!83;UBERON:0002329!7.16e-13!83;UBERON:0003077!7.16e-13!83;UBERON:0003059!7.16e-13!83;UBERON:0007282!7.16e-13!83;UBERON:0009618!7.16e-13!83;UBERON:0007285!7.16e-13!83;UBERON:0000481!1.41e-12!347;UBERON:0000475!3.17e-11!365;UBERON:0003104!9.49e-11!238;UBERON:0009142!9.49e-11!238;UBERON:0002100!1.56e-10!216;UBERON:0001134!2.70e-10!61;UBERON:0002036!2.70e-10!61;UBERON:0003082!2.70e-10!61;UBERON:0004290!4.13e-10!70;UBERON:0002385!1.64e-09!63;UBERON:0001015!1.64e-09!63;UBERON:0000383!1.64e-09!63;UBERON:0000486!2.48e-09!82;UBERON:0005256!2.31e-08!143|ontology_enrichment_uberon_v019=UBERON:0001737;1.14e-07;9!UBERON:0001557;1.14e-07;9|ontology_enrichment_uberon_v019_2=UBERON:0001134,1.05e-11,62;UBERON:0002036,1.05e-11,62;UBERON:0003082,1.05e-11,62;UBERON:0007524,1.57e-11,73;UBERON:0002329,2.04e-11,71;UBERON:0003059,2.04e-11,71;UBERON:0007282,2.04e-11,71;UBERON:0004290,2.04e-11,71;UBERON:0009618,2.04e-11,71;UBERON:0003077,4.89e-11,72;UBERON:0007285,4.89e-11,72;UBERON:0002385,7.11e-11,64;UBERON:0001015,7.11e-11,64;UBERON:0000383,7.11e-11,64;UBERON:0000486,2.48e-10,83;UBERON:0007503,3.72e-10,78;UBERON:0001737,7.16e-08,9;UBERON:0002100,3.65e-07,199;UBERON:0005256,5.97e-07,122|phase1_expression=0.363356758541113,2.14100523890983,2.96004248601539,1.0007329835313,0.446961094427288,0.872338524100369,0,1.26343974685366,0,1.47440361900905,0.697801167972428,0.436882744260345,0.263766978228454,2.47532705920093,1.32558950291166,2.01697543935533,3.01347264011988,3.65155045193687,2.43966399395253,1.10808952269109,0.612002073732759,0.313454721478088,1.71741592278634,0.547497700291537,0.627713197974014,0.0764134057479513,0.0821005894499457,0,0,0,0,0.919421224478927,0.30120591877825,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426224750532694,0,0,0,0,0,0,0,0.368277635987565,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0.221533894583621,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,2.01210257911091,0.12786256184353,4.3372698286148,0.50133791063589,2.17269778441236,0.795285947051099,2.43317435151318,0.661743720148475,1.10864698731282,0.43917392846563,0.327447688744282,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0.550236083880135,0,0,0.35576626268671,0,0,0,0,0,0,0.0892997282840798,0,0.337834441449967,0,0,0.183201743930407,0,0,0,2.48485975847659,0.886413581652058,1.32409180813219,2.29469296599051,1.41867352879343,1.12135520028461,2.1349799145941,4.68668341992604,0.622422070799533,0.942974704487816,0.326923806226917,0.454072282934794,0,0.70296429550139,0.624320153660641,2.85235910772225,0.448346041655403,1.52664848236894,1.61872944368132,1.68540968042698,1.83738754129404,2.82518929817066,2.47981874821837,2.37600571456411,2.71993622206413,0,2.15585442544872,2.02003336744879,0.625592599359821,3.3247693858102,1.75591048352335,2.14541457059314,1.05166641234618,0.907457465280168,2.15267562826634,1.06778694409284,1.48352330811693,1.80054657650641,1.23663035086127,0.772921620136887,0.930584281657949,2.53164498361899,2.04617710838517,1.00973509697646,1.10459878370759,1.45481451136931,2.4850671476163,1.5112814734146,0.508681776931463,1.54608682530637,1.36373060295417,0.286804595389004,0,0.397589304964456,0.348581828608555,0.414644220061482,0,0.72995471815166,0,1.28648187638577,0,5.10804720835177,4.33127689001751,5.67872640191251,4.04603256187444,3.61516544825223,4.30146493656336,4.35758888184812,1.89816495288877,6.0674088672074,4.905536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| ||
|DPIdataset=robustDPI | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC= | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=110bp_to_uc002ada.2_5end | |||
|description=CAGE_peak_1_at_uc002ada.2_5end | |||
|id=chr15:55700856..55700916,+ | |||
|ontology_enrichment_celltype=CL:0000055!5.80e-22!180;CL:0000680!6.99e-12!57;CL:0000056!6.99e-12!57;CL:0000355!6.99e-12!57;CL:0000393!8.86e-11!60;CL:0000211!8.86e-11!60;CL:0000187!1.42e-10!54;CL:0000183!1.59e-10!59;CL:0000192!1.66e-09!42;CL:0000514!1.66e-09!42;CL:0000548!3.04e-08!679;CL:0000004!3.04e-08!679;CL:0000255!3.04e-08!679;CL:0000012!7.01e-08!682;CL:0000057!3.06e-07!75;CL:0000220!6.83e-07!246 | |||
|ontology_enrichment_celltype_v019=CL:0000192;1.45e-08;43!CL:0000187;2.45e-07;55!CL:0000359;3.84e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,1.40e-13,58;CL:0000056,1.40e-13,58;CL:0000355,1.40e-13,58;CL:0000187,5.98e-12,55;CL:0000393,7.84e-12,61;CL:0000211,7.84e-12,61;CL:0000192,4.67e-11,43;CL:0000514,4.67e-11,43;CL:0000359,3.87e-07,32 | |||
|ontology_enrichment_development_v019=CL:0000514;1.45e-08;43!CL:0000355;1.29e-07;58 | |||
|ontology_enrichment_disease=DOID:14566!1.59e-11!239;DOID:162!7.57e-10!235;DOID:305!3.31e-07!106;DOID:193!8.14e-07!29 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.54e-08;14!DOID:193;2.34e-07;29!DOID:120;5.48e-07;27 | |||
|ontology_enrichment_disease_v019_2=DOID:14566,2.40e-08,239;DOID:2394,2.96e-08,14;DOID:193,3.78e-07,29;DOID:162,9.50e-07,235;DOID:120,9.69e-07,27 | |||
|ontology_enrichment_uberon=UBERON:0000914!7.16e-13!83;UBERON:0002329!7.16e-13!83;UBERON:0003077!7.16e-13!83;UBERON:0003059!7.16e-13!83;UBERON:0007282!7.16e-13!83;UBERON:0009618!7.16e-13!83;UBERON:0007285!7.16e-13!83;UBERON:0000481!1.41e-12!347;UBERON:0000475!3.17e-11!365;UBERON:0003104!9.49e-11!238;UBERON:0009142!9.49e-11!238;UBERON:0002100!1.56e-10!216;UBERON:0001134!2.70e-10!61;UBERON:0002036!2.70e-10!61;UBERON:0003082!2.70e-10!61;UBERON:0004290!4.13e-10!70;UBERON:0002385!1.64e-09!63;UBERON:0001015!1.64e-09!63;UBERON:0000383!1.64e-09!63;UBERON:0000486!2.48e-09!82;UBERON:0005256!2.31e-08!143 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.14e-07;9!UBERON:0001557;1.14e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,1.05e-11,62;UBERON:0002036,1.05e-11,62;UBERON:0003082,1.05e-11,62;UBERON:0007524,1.57e-11,73;UBERON:0002329,2.04e-11,71;UBERON:0003059,2.04e-11,71;UBERON:0007282,2.04e-11,71;UBERON:0004290,2.04e-11,71;UBERON:0009618,2.04e-11,71;UBERON:0003077,4.89e-11,72;UBERON:0007285,4.89e-11,72;UBERON:0002385,7.11e-11,64;UBERON:0001015,7.11e-11,64;UBERON:0000383,7.11e-11,64;UBERON:0000486,2.48e-10,83;UBERON:0007503,3.72e-10,78;UBERON:0001737,7.16e-08,9;UBERON:0002100,3.65e-07,199;UBERON:0005256,5.97e-07,122 | |||
|phase1_expression=0.363356758541113,2.14100523890983,2.96004248601539,1.0007329835313,0.446961094427288,0.872338524100369,0,1.26343974685366,0,1.47440361900905,0.697801167972428,0.436882744260345,0.263766978228454,2.47532705920093,1.32558950291166,2.01697543935533,3.01347264011988,3.65155045193687,2.43966399395253,1.10808952269109,0.612002073732759,0.313454721478088,1.71741592278634,0.547497700291537,0.627713197974014,0.0764134057479513,0.0821005894499457,0,0,0,0,0.919421224478927,0.30120591877825,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426224750532694,0,0,0,0,0,0,0,0.368277635987565,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0.221533894583621,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,2.01210257911091,0.12786256184353,4.3372698286148,0.50133791063589,2.17269778441236,0.795285947051099,2.43317435151318,0.661743720148475,1.10864698731282,0.43917392846563,0.327447688744282,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0.550236083880135,0,0,0.35576626268671,0,0,0,0,0,0,0.0892997282840798,0,0.337834441449967,0,0,0.183201743930407,0,0,0,2.48485975847659,0.886413581652058,1.32409180813219,2.29469296599051,1.41867352879343,1.12135520028461,2.1349799145941,4.68668341992604,0.622422070799533,0.942974704487816,0.326923806226917,0.454072282934794,0,0.70296429550139,0.624320153660641,2.85235910772225,0.448346041655403,1.52664848236894,1.61872944368132,1.68540968042698,1.83738754129404,2.82518929817066,2.47981874821837,2.37600571456411,2.71993622206413,0,2.15585442544872,2.02003336744879,0.625592599359821,3.3247693858102,1.75591048352335,2.14541457059314,1.05166641234618,0.907457465280168,2.15267562826634,1.06778694409284,1.48352330811693,1.80054657650641,1.23663035086127,0.772921620136887,0.930584281657949,2.53164498361899,2.04617710838517,1.00973509697646,1.10459878370759,1.45481451136931,2.4850671476163,1.5112814734146,0.508681776931463,1.54608682530637,1.36373060295417,0.286804595389004,0,0.397589304964456,0.348581828608555,0.414644220061482,0,0.72995471815166,0,1.28648187638577,0,5.10804720835177,4.33127689001751,5.67872640191251,4.04603256187444,3.61516544825223,4.30146493656336,4.35758888184812,1.89816495288877,6.0674088672074,4.90553662813365,6.15595451114225,0,0,0.4115740113314,0,0,0,0,0,0,3.43135620597051,1.86575485194663,0,0.703702806881416,0.185176890317059,0.977424915930974,0,5.77325368101093,0.231860809950154,5.16598254637615,0,0,0,0,0,0,0,0.148631162288728,0.93733833986777,5.03946384596579,2.69372684760534,3.04498977189684,1.45316969256981,0,0,0.176096868026452,0,0,0,1.33345578013555,1.14596527667483,0,0,1.13110241973656,0.901029173531752,1.42913216315289,0.560655421726804,1.74384027533312,1.68678057388185,6.07577064061555,0,1.690605505112,2.12750493267896,3.12022310734098,0.771622122786426,0,0.266422179016099,1.28680194292333,0.542621605391443,0,0.977208552881205,0.710783897485092,0.791951872933429,3.01439377059586,2.61460037580088,1.3996218765488,0,0,0,3.59437283237374,0,2.85273810081437,5.06734573336527,2.4657158706046,5.01370697071708,0.224170287987055,0,0,0,1.77866236955724,0,1.54657762555539,1.50764638800914,1.27587750330633,0,0,0,0.736148950314839,2.00068208423871,2.17012018959788,3.11956292296211,4.10386674233472,2.20783381047509,2.6942525448324,0.902838299183157,2.27407504055985,1.03473071292505,0.664225598535437,0.184369168541703,1.21637060255316,0.391602314925481,1.02943027143257,0,0,0,0,1.66435439510497,0.604780586659361,2.48107807818777,1.38115775959256,0.561320188866147,2.56278298511402,2.04682899626681,1.76939313257968,0,0.308419387605311,0.710246901252508,1.31403449622095,4.67328986265259,0.929683027679674,0.120859449591622,1.80455823272956,1.28913384510255,4.59257792658427,2.73136752010076,2.75361271414791,0,2.0794141018192,0.784349769176855,0,2.63879072232189,0,0.340187410553031,1.0795795805107,0,0.541892875087706,3.01013864312912,0.254876273045038,0.831076008928724,0.223874754722178,0,0.261435451024901,0.512900250232778,0.328014645699706,2.92840555197873,0,0.640986253728404,1.15513299888823,1.72279661398852,1.30012049207304,0,0.676695028044854,1.07834031980251,0.15350367472613,1.65403886981437,3.54486808065303,1.0151168573996,1.02271952899321,1.33548053470106,2.47927373041467,0,0.382838137483752,0.809262246844399,7.43752878875657,2.51849877464512,4.8792608911242,0.616067160352178,1.59691809095107,5.21959795245044,2.22389062924704,2.86249773483982,0.744316738719335,2.21465597303108,2.47819252100972,3.58256907835867,2.1396949401696,0.318203247925937,0,1.79872457583315,4.94166653524899,1.88499843753098,1.2130948894399,3.17020642346017,1.26377536871694,1.46290121726877,2.68084838594413,1.05650146756755,3.00299805097569,2.2624869112594,2.26016233240486,0,3.3171948762061,3.06915619677634,1.15755106853338,2.62357900818653,1.21746226177622,0.30982349809975,0.563391205064483,1.43411352204052,1.08073945114433,1.426684205925,1.41904425628239,1.2666458117859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| |||
|short_description=p1@uc002ada.2 | |||
}} |
Revision as of 07:30, 11 September 2013
Short description: | p1@uc002ada.2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_uc002ada.2_5end |
Coexpression cluster: | NA |
Association with transcript: | 110bp_to_uc002ada.2_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 1.40e-13 | 58 |
myoblast | 1.40e-13 | 58 |
multi-potent skeletal muscle stem cell | 1.40e-13 | 58 |
muscle cell | 5.98e-12 | 55 |
electrically responsive cell | 7.84e-12 | 61 |
electrically active cell | 7.84e-12 | 61 |
smooth muscle cell | 4.67e-11 | 43 |
smooth muscle myoblast | 4.67e-11 | 43 |
vascular associated smooth muscle cell | 3.87e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
skeletal muscle tissue | 1.05e-11 | 62 |
striated muscle tissue | 1.05e-11 | 62 |
myotome | 1.05e-11 | 62 |
dense mesenchyme tissue | 1.57e-11 | 73 |
somite | 2.04e-11 | 71 |
presomitic mesoderm | 2.04e-11 | 71 |
presumptive segmental plate | 2.04e-11 | 71 |
dermomyotome | 2.04e-11 | 71 |
trunk paraxial mesoderm | 2.04e-11 | 71 |
paraxial mesoderm | 4.89e-11 | 72 |
presumptive paraxial mesoderm | 4.89e-11 | 72 |
muscle tissue | 7.11e-11 | 64 |
musculature | 7.11e-11 | 64 |
musculature of body | 7.11e-11 | 64 |
multilaminar epithelium | 2.48e-10 | 83 |
epithelial vesicle | 3.72e-10 | 78 |
larynx | 7.16e-08 | 9 |
trunk | 3.65e-07 | 199 |
trunk mesenchyme | 5.97e-07 | 122 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 2.40e-08 | 239 |
ovarian cancer | 2.96e-08 | 14 |
reproductive organ cancer | 3.78e-07 | 29 |
cancer | 9.50e-07 | 235 |
female reproductive organ cancer | 9.69e-07 | 27 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.