FFCP PHASE1:Hg19::chr15:39888595..39888609,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C453|description=CAGE_peak_at_chr15:39888595..39888609,+|id=chr15:39888595..39888609,+|ontology_enrichment_celltype=CL:0002139!6.26e-13!24;CL:0000222!3.18e-11!119;CL:0000115!9.80e-11!35;CL:0000055!5.55e-10!180;CL:0000071!1.08e-09!18;CL:0002546!1.08e-09!18;CL:0000057!1.68e-09!75;CL:0002078!1.16e-08!44;CL:0000213!4.72e-08!57;CL:0000215!4.72e-08!57;CL:0002371!5.29e-07!591|ontology_enrichment_celltype_v019=CL:0002139;3.68e-18;24!CL:0000071;1.05e-14;18!CL:0000115;1.23e-12;36!CL:0002544;3.43e-11;6!CL:1000413;1.89e-09;9!CL:0002078;5.18e-08;45!CL:0002334;3.93e-07;12!CL:0002580;4.38e-07;3|ontology_enrichment_celltype_v019_2=CL:0002139,6.78e-19,24;CL:0000115,9.74e-16,36;CL:0000071,2.96e-15,18;CL:0002546,2.96e-15,18;CL:0002078,5.28e-13,45;CL:0002544,1.31e-11,6;CL:1000413,6.74e-10,9;CL:0000213,7.90e-09,58;CL:0000215,7.90e-09,58;CL:0000057,2.54e-08,76;CL:0000222,1.16e-07,121;CL:0002334,4.10e-07,12;CL:0002580,4.39e-07,3|ontology_enrichment_development_v019=CL:0002546;1.05e-14;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000055!6.83e-14!69;UBERON:0002049!3.25e-13!79;UBERON:0007798!3.25e-13!79;UBERON:0001981!1.59e-12!60;UBERON:0007500!1.59e-12!60;UBERON:0004537!1.59e-12!60;UBERON:0006965!1.59e-12!60;UBERON:0004872!1.24e-11!84;UBERON:0000487!1.87e-10!22;UBERON:0001986!1.08e-09!18;UBERON:0004638!1.08e-09!18;UBERON:0004852!1.08e-09!18;UBERON:0006914!3.28e-09!25;UBERON:0004535!3.97e-08!110;UBERON:0001637!4.22e-08!42;UBERON:0003509!4.22e-08!42;UBERON:0004572!4.22e-08!42;UBERON:0001009!8.38e-08!113;UBERON:0000947!2.40e-07!21;UBERON:0010191!2.40e-07!21;UBERON:0003914!2.57e-07!118;UBERON:0000490!8.02e-07!138|ontology_enrichment_uberon_v019=UBERON:0000487;1.22e-15;22!UBERON:0004638;1.05e-14;18!UBERON:0001986;1.05e-14;18!UBERON:0004852;1.05e-14;18!UBERON:0006914;2.83e-13;25!UBERON:0000947;9.15e-12;21!UBERON:0010191;9.15e-12;21!UBERON:0000490;1.36e-09;33!UBERON:0003915;1.89e-09;9!UBERON:0004700;1.89e-09;9!UBERON:0001917;1.89e-09;9!UBERON:0000055;2.13e-09;65!UBERON:0007500;2.50e-09;56!UBERON:0001981;2.50e-09;56!UBERON:0004537;2.50e-09;56!UBERON:0001637;3.93e-08;42!UBERON:0003509;3.93e-08;42!UBERON:0004572;3.93e-08;42!UBERON:0004573;2.01e-07;33!UBERON:0004571;2.01e-07;33!UBERON:0003914;2.22e-07;74|ontology_enrichment_uberon_v019_2=UBERON:0000055,2.07e-17,68;UBERON:0000487,4.19e-16,22;UBERON:0007500,2.68e-15,59;UBERON:0001981,2.68e-15,59;UBERON:0004537,2.68e-15,59;UBERON:0006965,2.68e-15,59;UBERON:0004638,2.96e-15,18;UBERON:0001986,2.96e-15,18;UBERON:0004852,2.96e-15,18;UBERON:0002049,4.71e-14,78;UBERON:0007798,4.71e-14,78;UBERON:0006914,1.13e-13,25;UBERON:0004872,1.34e-13,83;UBERON:0000947,4.00e-12,21;UBERON:0010191,4.00e-12,21;UBERON:0003914,5.16e-11,117;UBERON:0004535,9.69e-11,109;UBERON:0001009,3.26e-10,112;UBERON:0003915,6.74e-10,9;UBERON:0004700,6.74e-10,9;UBERON:0001917,6.74e-10,9;UBERON:0001637,1.54e-09,42;UBERON:0003509,1.54e-09,42;UBERON:0004572,1.54e-09,42;UBERON:0004573,1.02e-07,33;UBERON:0004571,1.02e-07,33;UBERON:0010260,9.49e-07,9|phase1_expression=3.45188920614058,1.92690471501885,0.986680828671798,2.00146596706261,0,2.61701557230111,7.59899634504932,0,0,0.491467873003018,0,0.655324116390517,0.791300934685361,0,0.331397375727916,2.01697543935533,0.602694528023977,1.46062018077475,1.95173119516203,0,0,0,0,0,0,0,0,0,0,0,0.464448369948228,0,0,0.369754010166788,0,0,0,0,2.00544447470142,0.217010870715852,0.447830948479849,0,0,0.290796477559129,0.377875943688809,0,1.16214518452842,0.411167888021826,0,0.863077176966451,0,0.236482229888585,0.689491361473237,0,0,0.376484679085209,0,0.224723484445085,1.83650335422542,0.320929027076094,0,0,0,0,1.16083695451434,0,0,3.26623264833766,0,0,3.02699751316684,0.368277635987565,0,0,0,0.209658645508376,0.112328631146495,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02290049474824,0,1.00267582127178,1.01392563272577,0.795285947051099,1.94653948121054,0,0.443458794925128,0.087834785693126,0,0,0,0,0,0,0,0,0,1.98762407366705,1.72046919021225,3.47140501607594,3.39184765154406,0.838998872419812,0,1.8809546988313,0.516833518338658,0.35576626268671,1.67360306382335,0.402829317109147,3.04108842287405,2.4406205754817,2.57364156242108,2.43042584364528,1.51809538082936,1.79623498100936,3.15312145353302,1.53316637465883,0,0.549605231791222,0,0,0.872188104285069,12.424298792383,1.13967460498122,1.72131935057184,1.43418310374407,0,0,1.06748995729705,1.72667283892012,0,0.134710672069688,0.163461903113459,0.151357427644931,0,0.234321431833797,0,0,0.149448680551801,0,0,0,0.408308342509787,0,0.103325781175765,2.37600571456411,7.66527480763526,0,0,0.168336113954066,0.125118519871964,0,1.31693286264251,4.2908291411862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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C453 | |||
|description=CAGE_peak_at_chr15:39888595..39888609,+ | |||
|id=chr15:39888595..39888609,+ | |||
|ontology_enrichment_celltype=CL:0002139!6.26e-13!24;CL:0000222!3.18e-11!119;CL:0000115!9.80e-11!35;CL:0000055!5.55e-10!180;CL:0000071!1.08e-09!18;CL:0002546!1.08e-09!18;CL:0000057!1.68e-09!75;CL:0002078!1.16e-08!44;CL:0000213!4.72e-08!57;CL:0000215!4.72e-08!57;CL:0002371!5.29e-07!591 | |||
|ontology_enrichment_celltype_v019=CL:0002139;3.68e-18;24!CL:0000071;1.05e-14;18!CL:0000115;1.23e-12;36!CL:0002544;3.43e-11;6!CL:1000413;1.89e-09;9!CL:0002078;5.18e-08;45!CL:0002334;3.93e-07;12!CL:0002580;4.38e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,6.78e-19,24;CL:0000115,9.74e-16,36;CL:0000071,2.96e-15,18;CL:0002546,2.96e-15,18;CL:0002078,5.28e-13,45;CL:0002544,1.31e-11,6;CL:1000413,6.74e-10,9;CL:0000213,7.90e-09,58;CL:0000215,7.90e-09,58;CL:0000057,2.54e-08,76;CL:0000222,1.16e-07,121;CL:0002334,4.10e-07,12;CL:0002580,4.39e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002546;1.05e-14;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000055!6.83e-14!69;UBERON:0002049!3.25e-13!79;UBERON:0007798!3.25e-13!79;UBERON:0001981!1.59e-12!60;UBERON:0007500!1.59e-12!60;UBERON:0004537!1.59e-12!60;UBERON:0006965!1.59e-12!60;UBERON:0004872!1.24e-11!84;UBERON:0000487!1.87e-10!22;UBERON:0001986!1.08e-09!18;UBERON:0004638!1.08e-09!18;UBERON:0004852!1.08e-09!18;UBERON:0006914!3.28e-09!25;UBERON:0004535!3.97e-08!110;UBERON:0001637!4.22e-08!42;UBERON:0003509!4.22e-08!42;UBERON:0004572!4.22e-08!42;UBERON:0001009!8.38e-08!113;UBERON:0000947!2.40e-07!21;UBERON:0010191!2.40e-07!21;UBERON:0003914!2.57e-07!118;UBERON:0000490!8.02e-07!138 | |||
|ontology_enrichment_uberon_v019=UBERON:0000487;1.22e-15;22!UBERON:0004638;1.05e-14;18!UBERON:0001986;1.05e-14;18!UBERON:0004852;1.05e-14;18!UBERON:0006914;2.83e-13;25!UBERON:0000947;9.15e-12;21!UBERON:0010191;9.15e-12;21!UBERON:0000490;1.36e-09;33!UBERON:0003915;1.89e-09;9!UBERON:0004700;1.89e-09;9!UBERON:0001917;1.89e-09;9!UBERON:0000055;2.13e-09;65!UBERON:0007500;2.50e-09;56!UBERON:0001981;2.50e-09;56!UBERON:0004537;2.50e-09;56!UBERON:0001637;3.93e-08;42!UBERON:0003509;3.93e-08;42!UBERON:0004572;3.93e-08;42!UBERON:0004573;2.01e-07;33!UBERON:0004571;2.01e-07;33!UBERON:0003914;2.22e-07;74 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000055,2.07e-17,68;UBERON:0000487,4.19e-16,22;UBERON:0007500,2.68e-15,59;UBERON:0001981,2.68e-15,59;UBERON:0004537,2.68e-15,59;UBERON:0006965,2.68e-15,59;UBERON:0004638,2.96e-15,18;UBERON:0001986,2.96e-15,18;UBERON:0004852,2.96e-15,18;UBERON:0002049,4.71e-14,78;UBERON:0007798,4.71e-14,78;UBERON:0006914,1.13e-13,25;UBERON:0004872,1.34e-13,83;UBERON:0000947,4.00e-12,21;UBERON:0010191,4.00e-12,21;UBERON:0003914,5.16e-11,117;UBERON:0004535,9.69e-11,109;UBERON:0001009,3.26e-10,112;UBERON:0003915,6.74e-10,9;UBERON:0004700,6.74e-10,9;UBERON:0001917,6.74e-10,9;UBERON:0001637,1.54e-09,42;UBERON:0003509,1.54e-09,42;UBERON:0004572,1.54e-09,42;UBERON:0004573,1.02e-07,33;UBERON:0004571,1.02e-07,33;UBERON:0010260,9.49e-07,9 | |||
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| |||
|short_description=p@chr15:39888595..39888609,+ | |||
}} |
Revision as of 06:52, 11 September 2013
Short description: | p@chr15:39888595..39888609, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr15:39888595..39888609, + |
Coexpression cluster: | C453_hepatic_Ewing_neurofibroma_spindle_tridermal_Olfactory_bone |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 6.78e-19 | 24 |
endothelial cell | 9.74e-16 | 36 |
blood vessel endothelial cell | 2.96e-15 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.96e-15 | 18 |
meso-epithelial cell | 5.28e-13 | 45 |
aortic endothelial cell | 1.31e-11 | 6 |
endothelial cell of artery | 6.74e-10 | 9 |
lining cell | 7.90e-09 | 58 |
barrier cell | 7.90e-09 | 58 |
fibroblast | 2.54e-08 | 76 |
mesodermal cell | 1.16e-07 | 121 |
preadipocyte | 4.10e-07 | 12 |
preadipocyte of the breast | 4.39e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
vessel | 2.07e-17 | 68 |
simple squamous epithelium | 4.19e-16 | 22 |
epithelial tube open at both ends | 2.68e-15 | 59 |
blood vessel | 2.68e-15 | 59 |
blood vasculature | 2.68e-15 | 59 |
vascular cord | 2.68e-15 | 59 |
blood vessel endothelium | 2.96e-15 | 18 |
endothelium | 2.96e-15 | 18 |
cardiovascular system endothelium | 2.96e-15 | 18 |
vasculature | 4.71e-14 | 78 |
vascular system | 4.71e-14 | 78 |
squamous epithelium | 1.13e-13 | 25 |
splanchnic layer of lateral plate mesoderm | 1.34e-13 | 83 |
aorta | 4.00e-12 | 21 |
aortic system | 4.00e-12 | 21 |
epithelial tube | 5.16e-11 | 117 |
cardiovascular system | 9.69e-11 | 109 |
circulatory system | 3.26e-10 | 112 |
endothelial tube | 6.74e-10 | 9 |
arterial system endothelium | 6.74e-10 | 9 |
endothelium of artery | 6.74e-10 | 9 |
artery | 1.54e-09 | 42 |
arterial blood vessel | 1.54e-09 | 42 |
arterial system | 1.54e-09 | 42 |
systemic artery | 1.02e-07 | 33 |
systemic arterial system | 1.02e-07 | 33 |
umbilical blood vessel | 9.49e-07 | 9 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.