FFCP PHASE1:Hg19::chr15:102192517..102192528,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=80213|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=24128|TSSclassifier=S|UniProt=|association_with_transcript=-17bp_to_ENST00000558677_5end|coexpression_cluster_id=C0|description=CAGE_peak_3_at_TM2D3_5end|id=chr15:102192517..102192528,-|ontology_enrichment_celltype=CL:0000738!1.39e-22!140;CL:0002057!5.66e-22!42;CL:0000860!2.13e-21!45;CL:0002087!1.50e-19!119;CL:0000037!1.64e-19!172;CL:0000566!1.64e-19!172;CL:0002031!1.10e-18!124;CL:0002032!4.88e-17!165;CL:0000837!4.88e-17!165;CL:0000766!5.28e-17!76;CL:0000988!7.83e-17!182;CL:0002009!1.82e-15!65;CL:0002194!7.91e-15!63;CL:0000576!7.91e-15!63;CL:0000040!7.91e-15!63;CL:0000559!7.91e-15!63;CL:0000839!1.67e-14!70;CL:0000557!5.14e-14!71;CL:0000763!2.33e-12!112;CL:0000049!2.33e-12!112;CL:0000219!2.55e-08!390;CL:0000134!6.02e-08!358;CL:0002320!4.27e-07!365|ontology_enrichment_celltype_v019=CL:0000860;2.53e-50;33!CL:0002057;2.53e-50;33!CL:0000473;1.09e-36;39!CL:0000234;1.09e-36;39!CL:0000576;9.32e-28;48!CL:0000766;1.15e-18;69!CL:0000094;4.32e-11;8!CL:0002087;2.46e-10;104!CL:0000763;1.44e-09;100!CL:0000738;4.24e-09;136!CL:0000081;1.04e-07;11!CL:0000624;2.18e-07;6|ontology_enrichment_celltype_v019_2=CL:0000860,7.85e-50,42;CL:0002057,7.85e-50,42;CL:0000473,1.46e-44,48;CL:0000234,1.46e-44,48;CL:0000766,7.20e-43,72;CL:0000738,6.13e-36,136;CL:0002194,2.89e-35,59;CL:0000576,2.89e-35,59;CL:0000040,2.89e-35,59;CL:0000559,2.89e-35,59;CL:0002009,9.86e-34,61;CL:0000839,3.61e-32,66;CL:0000557,1.63e-31,67;CL:0002087,1.98e-30,115;CL:0000037,8.41e-28,168;CL:0002031,5.10e-27,120;CL:0000988,1.83e-25,177;CL:0000763,3.87e-25,108;CL:0000049,3.87e-25,108;CL:0002032,6.06e-25,161;CL:0000837,6.06e-25,161;CL:0000094,1.58e-11,8;CL:0000134,1.70e-10,354;CL:0000219,1.92e-10,386;CL:0002320,6.19e-10,361;CL:0000723,2.01e-08,433;CL:0000048,2.68e-08,427;CL:0000081,5.18e-08,11;CL:0000034,6.42e-08,441;CL:0000624,1.23e-07,6|ontology_enrichment_development_v019=CL:0002057;1.71e-35;42!CL:0000049;1.55e-07;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!2.17e-12!102;UBERON:0003061!2.17e-12!102;UBERON:0001474!7.27e-12!86;UBERON:0004765!1.87e-11!101;UBERON:0001434!1.87e-11!101;UBERON:0002371!3.88e-11!80;UBERON:0002193!1.48e-09!112;UBERON:0002384!5.65e-07!375|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,6.30e-28,76;UBERON:0001474,6.63e-28,82;UBERON:0002390,3.75e-27,98;UBERON:0003061,3.75e-27,98;UBERON:0004765,2.54e-24,90;UBERON:0002193,2.19e-23,108;UBERON:0001434,3.08e-23,100;UBERON:0002405,4.60e-22,93;UBERON:0002204,1.90e-10,167;UBERON:0002384,3.56e-09,371;UBERON:0003081,1.95e-08,203|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0.261185628199839,0.245733936501509,0,0.436882744260345,0,0.37129905888014,0.331397375727916,0,0,0.730310090387373,0.975865597581014,0.369363174230364,0.204000691244253,0,0,0.273748850145768,0,0.458480434487708,0.492603536699674,0.314843125254717,1.57345710739562,1.53531759238885,1.54816123316076,0,0,0,0.852139206383318,0.426507697462265,1.17440175733939,1.10799081706375,0.401088894940283,0.217010870715852,0.447830948479849,0.32389366601898,0,2.76256653681173,0.755751887377619,1.4555043671269,6.74044207026485,4.93401465626191,8.981484755958,9.78154133895312,5.63553554364021,9.45928919554341,12.0660988257816,7.74581620300591,12.1883837934908,7.15320890261898,2.72906150057846,5.8428105955722,5.81559395504715,3.85114832491312,2.55734850319616,4.61791820261403,3.59034583718937,4.68847225585964,1.7412554317715,1.70215567407342,1.24564449799115,9.2962006144995,8.86520961314342,13.031330682307,2.42159801053347,2.20966581592539,2.21523671208619,1.26753171787165,0.425208599930087,1.25795187305026,2.3589012540764,1.35159203557356,2.25015821375912,0.285012743741249,0.19891667719909,0.91332076882317,0,0.546138611262131,0.889509253863555,0.853460445133014,0.400395987036012,0,0,0,1.70763890732835,0.587237189370939,1.91136614062614,0,0,0.526768169550154,0.983548850569165,1.57204305099666,1.85041349099558,0.501559486172034,2.28145586643513,0.473447805734733,0,0.445641827540694,1.17842362989935,1.32920336750173,1.35401931882508,0.512365278902701,0.130059347559878,0.328875809207352,0.552700035571697,0,2.81744470007915,2.1403266247177,0,0.566546713487831,2.29932296161153,0.34362744548263,1.51811815211702,0.318565414324097,0.651083453856419,0,0,0.255973222308837,0,0.473554504088034,0,1.41124720257313,0.802320587350522,1.15859523106239,0,0,0,0,0,0.289693037921647,0,0.486634870302636,0.283604451492204,0,0.087834785693126,0.392937226493138,0,0,0,0.174129737299267,0.531831842075461,1.43094374583205,0.571994910780128,0.74291500265913,0.198762407366705,0,0,0,0,0.275118041940067,0,0,0.35576626268671,0.33472061276467,0,0,0.488124115096339,0.367663080345869,0,0.267899184852239,0,0.112611480483322,0,0,0,5.27121669744253,11.6334079244498,0.436094052142534,0.496971951695318,0.633152558322899,0.662045904066094,0,0.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=80213 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24128 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-17bp_to_ENST00000558677_5end | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_3_at_TM2D3_5end | |||
|id=chr15:102192517..102192528,- | |||
|ontology_enrichment_celltype=CL:0000738!1.39e-22!140;CL:0002057!5.66e-22!42;CL:0000860!2.13e-21!45;CL:0002087!1.50e-19!119;CL:0000037!1.64e-19!172;CL:0000566!1.64e-19!172;CL:0002031!1.10e-18!124;CL:0002032!4.88e-17!165;CL:0000837!4.88e-17!165;CL:0000766!5.28e-17!76;CL:0000988!7.83e-17!182;CL:0002009!1.82e-15!65;CL:0002194!7.91e-15!63;CL:0000576!7.91e-15!63;CL:0000040!7.91e-15!63;CL:0000559!7.91e-15!63;CL:0000839!1.67e-14!70;CL:0000557!5.14e-14!71;CL:0000763!2.33e-12!112;CL:0000049!2.33e-12!112;CL:0000219!2.55e-08!390;CL:0000134!6.02e-08!358;CL:0002320!4.27e-07!365 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.53e-50;33!CL:0002057;2.53e-50;33!CL:0000473;1.09e-36;39!CL:0000234;1.09e-36;39!CL:0000576;9.32e-28;48!CL:0000766;1.15e-18;69!CL:0000094;4.32e-11;8!CL:0002087;2.46e-10;104!CL:0000763;1.44e-09;100!CL:0000738;4.24e-09;136!CL:0000081;1.04e-07;11!CL:0000624;2.18e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,7.85e-50,42;CL:0002057,7.85e-50,42;CL:0000473,1.46e-44,48;CL:0000234,1.46e-44,48;CL:0000766,7.20e-43,72;CL:0000738,6.13e-36,136;CL:0002194,2.89e-35,59;CL:0000576,2.89e-35,59;CL:0000040,2.89e-35,59;CL:0000559,2.89e-35,59;CL:0002009,9.86e-34,61;CL:0000839,3.61e-32,66;CL:0000557,1.63e-31,67;CL:0002087,1.98e-30,115;CL:0000037,8.41e-28,168;CL:0002031,5.10e-27,120;CL:0000988,1.83e-25,177;CL:0000763,3.87e-25,108;CL:0000049,3.87e-25,108;CL:0002032,6.06e-25,161;CL:0000837,6.06e-25,161;CL:0000094,1.58e-11,8;CL:0000134,1.70e-10,354;CL:0000219,1.92e-10,386;CL:0002320,6.19e-10,361;CL:0000723,2.01e-08,433;CL:0000048,2.68e-08,427;CL:0000081,5.18e-08,11;CL:0000034,6.42e-08,441;CL:0000624,1.23e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002057;1.71e-35;42!CL:0000049;1.55e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.17e-12!102;UBERON:0003061!2.17e-12!102;UBERON:0001474!7.27e-12!86;UBERON:0004765!1.87e-11!101;UBERON:0001434!1.87e-11!101;UBERON:0002371!3.88e-11!80;UBERON:0002193!1.48e-09!112;UBERON:0002384!5.65e-07!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,6.30e-28,76;UBERON:0001474,6.63e-28,82;UBERON:0002390,3.75e-27,98;UBERON:0003061,3.75e-27,98;UBERON:0004765,2.54e-24,90;UBERON:0002193,2.19e-23,108;UBERON:0001434,3.08e-23,100;UBERON:0002405,4.60e-22,93;UBERON:0002204,1.90e-10,167;UBERON:0002384,3.56e-09,371;UBERON:0003081,1.95e-08,203 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0.261185628199839,0.245733936501509,0,0.436882744260345,0,0.37129905888014,0.331397375727916,0,0,0.730310090387373,0.975865597581014,0.369363174230364,0.204000691244253,0,0,0.273748850145768,0,0.458480434487708,0.492603536699674,0.314843125254717,1.57345710739562,1.53531759238885,1.54816123316076,0,0,0,0.852139206383318,0.426507697462265,1.17440175733939,1.10799081706375,0.401088894940283,0.217010870715852,0.447830948479849,0.32389366601898,0,2.76256653681173,0.755751887377619,1.4555043671269,6.74044207026485,4.93401465626191,8.981484755958,9.78154133895312,5.63553554364021,9.45928919554341,12.0660988257816,7.74581620300591,12.1883837934908,7.15320890261898,2.72906150057846,5.8428105955722,5.81559395504715,3.85114832491312,2.55734850319616,4.61791820261403,3.59034583718937,4.68847225585964,1.7412554317715,1.70215567407342,1.24564449799115,9.2962006144995,8.86520961314342,13.031330682307,2.42159801053347,2.20966581592539,2.21523671208619,1.26753171787165,0.425208599930087,1.25795187305026,2.3589012540764,1.35159203557356,2.25015821375912,0.285012743741249,0.19891667719909,0.91332076882317,0,0.546138611262131,0.889509253863555,0.853460445133014,0.400395987036012,0,0,0,1.70763890732835,0.587237189370939,1.91136614062614,0,0,0.526768169550154,0.983548850569165,1.57204305099666,1.85041349099558,0.501559486172034,2.28145586643513,0.473447805734733,0,0.445641827540694,1.17842362989935,1.32920336750173,1.35401931882508,0.512365278902701,0.130059347559878,0.328875809207352,0.552700035571697,0,2.81744470007915,2.1403266247177,0,0.566546713487831,2.29932296161153,0.34362744548263,1.51811815211702,0.318565414324097,0.651083453856419,0,0,0.255973222308837,0,0.473554504088034,0,1.41124720257313,0.802320587350522,1.15859523106239,0,0,0,0,0,0.289693037921647,0,0.486634870302636,0.283604451492204,0,0.087834785693126,0.392937226493138,0,0,0,0.174129737299267,0.531831842075461,1.43094374583205,0.571994910780128,0.74291500265913,0.198762407366705,0,0,0,0,0.275118041940067,0,0,0.35576626268671,0.33472061276467,0,0,0.488124115096339,0.367663080345869,0,0.267899184852239,0,0.112611480483322,0,0,0,5.27121669744253,11.6334079244498,0.436094052142534,0.496971951695318,0.633152558322899,0.662045904066094,0,0.709336764396714,0.560677600142307,0,0,0,0.269421344139376,0.326923806226917,0.302714855289863,0.576175924479999,0.234321431833797,0.312160076830321,1.1409436430889,0,0.117434498643765,0.323745888736263,0.561803226808994,0.816616685019573,0.61417158655884,0.103325781175765,0,0.741800787835671,0,0,0,0,0,0,0.612975591598039,0.300476117813194,0.453728732640084,0.717558542755448,0.427114777637135,0.847727604638247,0.300091096084402,0.515262646192195,0.515281080091258,0.558350568994769,0.337552664482532,0.292311015483596,1.51460264546469,0.0920498986422993,0.161646056818812,0.355009592516614,0.604512589365842,0.67824236924195,0.386521706326594,0.818238361772504,0.860413786167011,0.243947412259191,0.662648841607426,0.580969714347592,0.518305275076852,0,0,0,0,0,0,0.721879481669586,0.473227200159376,0.168584690078102,0.482022059766964,0.992645754591546,0.653638332277218,0.474541238222193,0.404493924480493,0.196221465125346,1.15424147083917,0,0,0,0,0,0,0.590789906681404,1.7658523976586,0.122988438543114,0,0.548751427043128,0,0.100528972411631,0.0925884451585296,0.325808305310325,1.03993478527958,1.44331342025273,0.115930404975077,0,0.144366447761074,0,0,0,0,0.246217006087397,0,0.594524649154913,0.93733833986777,0.335964256397719,0.708875486211932,0.985143749731331,0.581267877027924,0,1.47798971368783,0.264145302039678,0.207328115540772,0,0.25248486685276,0.253991577168676,0,1.17217447210047,0,0.308482478109971,0.300343057843917,0.571652865261156,0.448524337381443,0,0.22001485746285,0.258543431515556,0,0,0.26593811658487,0,0,0,0,0.57191197463259,0.542621605391443,0,0.65147236858747,0,1.58390374586686,0,0,0.299918973546171,1.2162378064119,0.502257091432126,0,0,0,0,1.30303176000821,0.410952645100767,0.358121926479791,0.224170287987055,1.57624608161542,0.646882724578552,1.28343036279748,1.01637849688985,0,3.09315525111078,1.50764638800914,3.18969375826582,2.99602809578873,0,5.38740167466846,0,0,0,0.207970861530807,0.178428988797162,0,0,0,2.27407504055985,1.03473071292505,0,0,0.434418072340414,0,0,0.82707210449155,2.15714200818617,2.02782359826544,0.606255142892519,0,0,0.248107807818777,0.153461973288062,0,0.128139149255701,0,0.965123526861645,0,0.462629081407967,0,0.0821271560138091,1.03850885836724,0.464841513839837,0.483437798366489,0.200506470303285,0.0920809889358963,0.229628896329213,0.182091168006717,0,0,0.462092022626489,0,0,0.422206515571503,0,0.170093705276516,0.431831832204279,0,0,0,0,0,0.447749509444357,0.877039506583738,0.522870902049801,0,0,0,0.206082023295445,0.732555718546747,1.07262349896764,1.14853107599234,0.650060246036521,1.6068392984416,0.386682873168488,0.308097234229289,0,0.827019434907183,0.107420244868274,0.290033387828457,0.0852266274161009,0,0.330569830721956,0,0.382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| |||
|short_description=p3@TM2D3 | |||
}} |
Revision as of 06:21, 11 September 2013
Short description: | p3@TM2D3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_TM2D3_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | -17bp_to_ENST00000558677_5end |
EntrezGene: | TM2D3 |
HGNC: | 24128 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 7.85e-50 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.85e-50 | 42 |
defensive cell | 1.46e-44 | 48 |
phagocyte | 1.46e-44 | 48 |
myeloid leukocyte | 7.20e-43 | 72 |
leukocyte | 6.13e-36 | 136 |
monopoietic cell | 2.89e-35 | 59 |
monocyte | 2.89e-35 | 59 |
monoblast | 2.89e-35 | 59 |
promonocyte | 2.89e-35 | 59 |
macrophage dendritic cell progenitor | 9.86e-34 | 61 |
myeloid lineage restricted progenitor cell | 3.61e-32 | 66 |
granulocyte monocyte progenitor cell | 1.63e-31 | 67 |
nongranular leukocyte | 1.98e-30 | 115 |
hematopoietic stem cell | 8.41e-28 | 168 |
hematopoietic lineage restricted progenitor cell | 5.10e-27 | 120 |
hematopoietic cell | 1.83e-25 | 177 |
myeloid cell | 3.87e-25 | 108 |
common myeloid progenitor | 3.87e-25 | 108 |
hematopoietic oligopotent progenitor cell | 6.06e-25 | 161 |
hematopoietic multipotent progenitor cell | 6.06e-25 | 161 |
granulocyte | 1.58e-11 | 8 |
mesenchymal cell | 1.70e-10 | 354 |
motile cell | 1.92e-10 | 386 |
connective tissue cell | 6.19e-10 | 361 |
somatic stem cell | 2.01e-08 | 433 |
multi fate stem cell | 2.68e-08 | 427 |
blood cell | 5.18e-08 | 11 |
stem cell | 6.42e-08 | 441 |
CD4-positive, alpha-beta T cell | 1.23e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 6.30e-28 | 76 |
bone element | 6.63e-28 | 82 |
hematopoietic system | 3.75e-27 | 98 |
blood island | 3.75e-27 | 98 |
skeletal element | 2.54e-24 | 90 |
hemolymphoid system | 2.19e-23 | 108 |
skeletal system | 3.08e-23 | 100 |
immune system | 4.60e-22 | 93 |
musculoskeletal system | 1.90e-10 | 167 |
connective tissue | 3.56e-09 | 371 |
lateral plate mesoderm | 1.95e-08 | 203 |
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