FFCP PHASE1:Hg19::chr13:99127832..99127863,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C65|description=CAGE_peak_at_chr13:99127832..99127863,-|id=chr13:99127832..99127863,-|ontology_enrichment_celltype=CL:0002057!4.76e-28!42;CL:0000860!2.54e-25!45;CL:0000766!3.50e-20!76;CL:0000839!1.19e-16!70;CL:0002194!2.91e-16!63;CL:0000576!2.91e-16!63;CL:0000040!2.91e-16!63;CL:0000559!2.91e-16!63;CL:0000557!3.07e-16!71;CL:0002009!2.11e-15!65;CL:0000763!2.35e-15!112;CL:0000049!2.35e-15!112;CL:0000988!7.68e-08!182;CL:0000738!1.56e-07!140;CL:0002032!2.79e-07!165;CL:0000837!2.79e-07!165;CL:0000037!2.86e-07!172;CL:0000566!2.86e-07!172|ontology_enrichment_celltype_v019=CL:0000860;8.88e-91;33!CL:0002057;8.88e-91;33!CL:0000473;2.43e-62;39!CL:0000234;2.43e-62;39!CL:0000576;1.30e-41;48!CL:0000766;2.76e-24;69!CL:0000763;2.22e-15;100!CL:0002586;2.39e-11;3!CL:0002087;3.72e-11;104!CL:0000149;1.26e-08;4!CL:0000738;2.12e-08;136!CL:0000771;3.32e-08;2!CL:0000094;3.26e-07;8|ontology_enrichment_celltype_v019_2=CL:0000860,1.16e-76,42;CL:0002057,1.16e-76,42;CL:0000473,4.23e-66,48;CL:0000234,4.23e-66,48;CL:0000766,1.75e-56,72;CL:0002194,2.59e-51,59;CL:0000576,2.59e-51,59;CL:0000040,2.59e-51,59;CL:0000559,2.59e-51,59;CL:0002009,2.10e-49,61;CL:0000839,2.12e-48,66;CL:0000557,1.43e-47,67;CL:0000763,1.59e-39,108;CL:0000049,1.59e-39,108;CL:0000738,1.55e-29,136;CL:0002032,9.27e-27,161;CL:0000837,9.27e-27,161;CL:0002031,9.36e-27,120;CL:0002087,2.46e-26,115;CL:0000037,2.90e-25,168;CL:0000988,1.63e-23,177;CL:0002586,2.14e-11,3;CL:0000149,1.17e-08,4;CL:0000771,3.03e-08,2;CL:0000134,6.92e-08,354;CL:0002320,1.46e-07,361;CL:0000094,2.97e-07,8|ontology_enrichment_development_v019=CL:0002057;2.69e-57;42!CL:0000049;1.30e-13;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!6.90e-14!80;UBERON:0001474!7.52e-13!86;UBERON:0002405!1.08e-12!115;UBERON:0002193!1.43e-12!112;UBERON:0002390!2.62e-11!102;UBERON:0003061!2.62e-11!102;UBERON:0004765!1.69e-10!101;UBERON:0001434!1.69e-10!101;UBERON:0007625!2.28e-10!11;UBERON:0000019!2.59e-07!19;UBERON:0000047!2.59e-07!19;UBERON:0004088!2.59e-07!19;UBERON:0003072!2.59e-07!19;UBERON:0003071!2.59e-07!19;UBERON:0004128!2.59e-07!19;UBERON:0000970!8.77e-07!20|ontology_enrichment_uberon_v019=UBERON:0007625;6.67e-15;11!UBERON:0000966;9.92e-12;5!UBERON:0005388;9.92e-12;5!UBERON:0001802;9.92e-12;5!UBERON:0001781;2.39e-11;3!UBERON:0001782;2.39e-11;3!UBERON:0000019;1.00e-10;19!UBERON:0000047;1.00e-10;19!UBERON:0004088;1.00e-10;19!UBERON:0010230;1.00e-10;19!UBERON:0000970;3.98e-10;20!UBERON:0002104;1.39e-09;21!UBERON:0001456;1.39e-09;21!UBERON:0000020;1.21e-08;23!UBERON:0001032;3.14e-08;24!UBERON:0004456;3.14e-08;24|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.50e-41,76;UBERON:0001474,1.59e-37,82;UBERON:0004765,1.59e-33,90;UBERON:0002405,3.35e-32,93;UBERON:0002390,3.58e-30,98;UBERON:0003061,3.58e-30,98;UBERON:0001434,2.03e-29,100;UBERON:0002193,1.12e-26,108;UBERON:0002204,5.95e-17,167;UBERON:0007625,8.06e-15,11;UBERON:0003081,1.40e-11,203;UBERON:0001782,2.14e-11,3;UBERON:0005424,2.14e-11,3;UBERON:0000019,4.43e-10,20;UBERON:0000047,4.43e-10,20;UBERON:0010312,4.43e-10,20;UBERON:0004088,4.43e-10,20;UBERON:0010230,4.43e-10,20;UBERON:0003072,4.43e-10,20;UBERON:0004128,4.43e-10,20;UBERON:0003071,4.43e-10,20;UBERON:0000966,7.97e-10,6;UBERON:0005388,7.97e-10,6;UBERON:0001802,7.97e-10,6;UBERON:0000970,1.53e-09,21;UBERON:0002104,1.53e-09,21;UBERON:0001456,4.75e-09,22;UBERON:0001781,1.17e-08,4;UBERON:0000020,3.42e-08,24;UBERON:0001032,3.42e-08,24;UBERON:0004456,3.42e-08,24;UBERON:0002384,9.62e-08,371|phase1_expression=0.363356758541113,0,0.281908808191942,0,0,0,0,0,0,0,0,0,0,0,0.331397375727916,0,0,0,0,0,0.204000691244253,0.626909442956176,0,0,0.251085279189606,0,0,0,0.393364276848904,1.15148819429164,1.70297735647684,0,0,0,0,0,0,0,0.802177789880567,0,0,0,0,21.6643375781551,24.1840603960838,26.441662669472,15.3403164357752,14.3908760807639,13.9367866902797,18.1246207162955,18.1874101635661,18.4456139313096,7.58440497620561,7.10033151942209,5.41705946377367,27.2951392336777,37.3881425579249,51.0122309690342,27.8536342057521,45.5719218448053,24.2948107803636,26.3881040149373,26.9275937789203,23.8685860298309,9.57690487474327,5.6738522469114,14.3249117268982,9.79869794501299,15.644487552606,18.0266741105247,2.42159801053347,6.62899744777616,8.22802207346299,0,0,0.209658645508376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0,0,0,0.795285947051099,0,3.11964896641424,1.10864698731282,0.614843499851882,0,0,0,0,0.174129737299267,0,0,0,0,0.198762407366705,0,0,0,0,0,0,0.516833518338658,0.35576626268671,0,0,0,0,0.367663080345869,0,0,0,0,0,0,0.183201743930407,2.63560834872127,3.87780264148325,0,0.496971951695318,0,0,0,0.354668382198357,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C65 | |||
|description=CAGE_peak_at_chr13:99127832..99127863,- | |||
|id=chr13:99127832..99127863,- | |||
|ontology_enrichment_celltype=CL:0002057!4.76e-28!42;CL:0000860!2.54e-25!45;CL:0000766!3.50e-20!76;CL:0000839!1.19e-16!70;CL:0002194!2.91e-16!63;CL:0000576!2.91e-16!63;CL:0000040!2.91e-16!63;CL:0000559!2.91e-16!63;CL:0000557!3.07e-16!71;CL:0002009!2.11e-15!65;CL:0000763!2.35e-15!112;CL:0000049!2.35e-15!112;CL:0000988!7.68e-08!182;CL:0000738!1.56e-07!140;CL:0002032!2.79e-07!165;CL:0000837!2.79e-07!165;CL:0000037!2.86e-07!172;CL:0000566!2.86e-07!172 | |||
|ontology_enrichment_celltype_v019=CL:0000860;8.88e-91;33!CL:0002057;8.88e-91;33!CL:0000473;2.43e-62;39!CL:0000234;2.43e-62;39!CL:0000576;1.30e-41;48!CL:0000766;2.76e-24;69!CL:0000763;2.22e-15;100!CL:0002586;2.39e-11;3!CL:0002087;3.72e-11;104!CL:0000149;1.26e-08;4!CL:0000738;2.12e-08;136!CL:0000771;3.32e-08;2!CL:0000094;3.26e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.16e-76,42;CL:0002057,1.16e-76,42;CL:0000473,4.23e-66,48;CL:0000234,4.23e-66,48;CL:0000766,1.75e-56,72;CL:0002194,2.59e-51,59;CL:0000576,2.59e-51,59;CL:0000040,2.59e-51,59;CL:0000559,2.59e-51,59;CL:0002009,2.10e-49,61;CL:0000839,2.12e-48,66;CL:0000557,1.43e-47,67;CL:0000763,1.59e-39,108;CL:0000049,1.59e-39,108;CL:0000738,1.55e-29,136;CL:0002032,9.27e-27,161;CL:0000837,9.27e-27,161;CL:0002031,9.36e-27,120;CL:0002087,2.46e-26,115;CL:0000037,2.90e-25,168;CL:0000988,1.63e-23,177;CL:0002586,2.14e-11,3;CL:0000149,1.17e-08,4;CL:0000771,3.03e-08,2;CL:0000134,6.92e-08,354;CL:0002320,1.46e-07,361;CL:0000094,2.97e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;2.69e-57;42!CL:0000049;1.30e-13;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!6.90e-14!80;UBERON:0001474!7.52e-13!86;UBERON:0002405!1.08e-12!115;UBERON:0002193!1.43e-12!112;UBERON:0002390!2.62e-11!102;UBERON:0003061!2.62e-11!102;UBERON:0004765!1.69e-10!101;UBERON:0001434!1.69e-10!101;UBERON:0007625!2.28e-10!11;UBERON:0000019!2.59e-07!19;UBERON:0000047!2.59e-07!19;UBERON:0004088!2.59e-07!19;UBERON:0003072!2.59e-07!19;UBERON:0003071!2.59e-07!19;UBERON:0004128!2.59e-07!19;UBERON:0000970!8.77e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0007625;6.67e-15;11!UBERON:0000966;9.92e-12;5!UBERON:0005388;9.92e-12;5!UBERON:0001802;9.92e-12;5!UBERON:0001781;2.39e-11;3!UBERON:0001782;2.39e-11;3!UBERON:0000019;1.00e-10;19!UBERON:0000047;1.00e-10;19!UBERON:0004088;1.00e-10;19!UBERON:0010230;1.00e-10;19!UBERON:0000970;3.98e-10;20!UBERON:0002104;1.39e-09;21!UBERON:0001456;1.39e-09;21!UBERON:0000020;1.21e-08;23!UBERON:0001032;3.14e-08;24!UBERON:0004456;3.14e-08;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.50e-41,76;UBERON:0001474,1.59e-37,82;UBERON:0004765,1.59e-33,90;UBERON:0002405,3.35e-32,93;UBERON:0002390,3.58e-30,98;UBERON:0003061,3.58e-30,98;UBERON:0001434,2.03e-29,100;UBERON:0002193,1.12e-26,108;UBERON:0002204,5.95e-17,167;UBERON:0007625,8.06e-15,11;UBERON:0003081,1.40e-11,203;UBERON:0001782,2.14e-11,3;UBERON:0005424,2.14e-11,3;UBERON:0000019,4.43e-10,20;UBERON:0000047,4.43e-10,20;UBERON:0010312,4.43e-10,20;UBERON:0004088,4.43e-10,20;UBERON:0010230,4.43e-10,20;UBERON:0003072,4.43e-10,20;UBERON:0004128,4.43e-10,20;UBERON:0003071,4.43e-10,20;UBERON:0000966,7.97e-10,6;UBERON:0005388,7.97e-10,6;UBERON:0001802,7.97e-10,6;UBERON:0000970,1.53e-09,21;UBERON:0002104,1.53e-09,21;UBERON:0001456,4.75e-09,22;UBERON:0001781,1.17e-08,4;UBERON:0000020,3.42e-08,24;UBERON:0001032,3.42e-08,24;UBERON:0004456,3.42e-08,24;UBERON:0002384,9.62e-08,371 | |||
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|short_description=p@chr13:99127832..99127863,- | |||
}} |
Revision as of 03:04, 11 September 2013
Short description: | p@chr13:99127832..99127863, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr13:99127832..99127863, - |
Coexpression cluster: | C65_CD14_Eosinophils_Monocytederived_Basophils_immature_Macrophage_Neutrophils |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.16e-76 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.16e-76 | 42 |
defensive cell | 4.23e-66 | 48 |
phagocyte | 4.23e-66 | 48 |
myeloid leukocyte | 1.75e-56 | 72 |
monopoietic cell | 2.59e-51 | 59 |
monocyte | 2.59e-51 | 59 |
monoblast | 2.59e-51 | 59 |
promonocyte | 2.59e-51 | 59 |
macrophage dendritic cell progenitor | 2.10e-49 | 61 |
myeloid lineage restricted progenitor cell | 2.12e-48 | 66 |
granulocyte monocyte progenitor cell | 1.43e-47 | 67 |
myeloid cell | 1.59e-39 | 108 |
common myeloid progenitor | 1.59e-39 | 108 |
leukocyte | 1.55e-29 | 136 |
hematopoietic oligopotent progenitor cell | 9.27e-27 | 161 |
hematopoietic multipotent progenitor cell | 9.27e-27 | 161 |
hematopoietic lineage restricted progenitor cell | 9.36e-27 | 120 |
nongranular leukocyte | 2.46e-26 | 115 |
hematopoietic stem cell | 2.90e-25 | 168 |
hematopoietic cell | 1.63e-23 | 177 |
retinal pigment epithelial cell | 2.14e-11 | 3 |
visual pigment cell | 1.17e-08 | 4 |
eosinophil | 3.03e-08 | 2 |
mesenchymal cell | 6.92e-08 | 354 |
connective tissue cell | 1.46e-07 | 361 |
granulocyte | 2.97e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.50e-41 | 76 |
bone element | 1.59e-37 | 82 |
skeletal element | 1.59e-33 | 90 |
immune system | 3.35e-32 | 93 |
hematopoietic system | 3.58e-30 | 98 |
blood island | 3.58e-30 | 98 |
skeletal system | 2.03e-29 | 100 |
hemolymphoid system | 1.12e-26 | 108 |
musculoskeletal system | 5.95e-17 | 167 |
pigment epithelium of eye | 8.06e-15 | 11 |
lateral plate mesoderm | 1.40e-11 | 203 |
pigmented layer of retina | 2.14e-11 | 3 |
presumptive retinal pigmented epithelium | 2.14e-11 | 3 |
camera-type eye | 4.43e-10 | 20 |
simple eye | 4.43e-10 | 20 |
immature eye | 4.43e-10 | 20 |
ocular region | 4.43e-10 | 20 |
eyeball of camera-type eye | 4.43e-10 | 20 |
optic cup | 4.43e-10 | 20 |
optic vesicle | 4.43e-10 | 20 |
eye primordium | 4.43e-10 | 20 |
retina | 7.97e-10 | 6 |
photoreceptor array | 7.97e-10 | 6 |
posterior segment of eyeball | 7.97e-10 | 6 |
eye | 1.53e-09 | 21 |
visual system | 1.53e-09 | 21 |
face | 4.75e-09 | 22 |
layer of retina | 1.17e-08 | 4 |
sense organ | 3.42e-08 | 24 |
sensory system | 3.42e-08 | 24 |
entire sense organ system | 3.42e-08 | 24 |
connective tissue | 9.62e-08 | 371 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.