FFCP PHASE1:Hg19::chr12:70636673..70636700,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding|HGNC=NA|TSSclassifier=W|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr12:70636673..70636700,-|id=chr12:70636673..70636700,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000764;5.94e-19;2!CL:0000558;5.94e-19;2!CL:0000167;1.03e-10;1!CL:0000164;1.03e-10;1!CL:0000502;1.03e-10;1!CL:0000172;1.03e-10;1!CL:0000173;1.03e-10;1|ontology_enrichment_celltype_v019_2=CL:0000764,5.44e-19,2;CL:0000765,5.44e-19,2;CL:0000050,5.44e-19,2;CL:0000038,5.44e-19,2;CL:0000558,5.44e-19,2;CL:0000547,5.44e-19,2;CL:0000549,5.44e-19,2;CL:0000550,5.44e-19,2;CL:0000552,5.44e-19,2;CL:0000167,9.84e-11,1;CL:0000164,9.84e-11,1;CL:0000502,9.84e-11,1;CL:0000172,9.84e-11,1;CL:0000173,9.84e-11,1;CL:0002351,9.84e-11,1|ontology_enrichment_development_v019=UBERON:0006215;8.08e-29;3!CL:0002351;1.03e-10;1!UBERON:0005425;2.38e-10;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:4430;1.03e-10;1|ontology_enrichment_disease_v019_2=DOID:4430,9.84e-11,1|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=UBERON:0002037;1.00e-14;6!UBERON:0004732;1.10e-11;13!UBERON:0002038;2.38e-10;1!UBERON:0000941;2.38e-10;1!UBERON:0001785;2.38e-10;1!UBERON:0002464;2.38e-10;1!UBERON:0004904;2.38e-10;1!UBERON:0001021;2.38e-10;1!UBERON:0009661;2.38e-10;1!UBERON:0002950;2.38e-10;1!UBERON:0001891;2.38e-10;1!UBERON:0002680;5.40e-10;9!UBERON:0001895;5.40e-10;9!UBERON:0004733;1.30e-07;12!UBERON:0002028;1.30e-07;12|ontology_enrichment_uberon_v019_2=UBERON:0002037,1.05e-14,6;UBERON:0006215,1.05e-14,6;UBERON:0004732,1.06e-11,13;UBERON:0000941,1.89e-10,1;UBERON:0001785,1.89e-10,1;UBERON:0002464,1.89e-10,1;UBERON:0004904,1.89e-10,1;UBERON:0001021,1.89e-10,1;UBERON:0003902,1.89e-10,1;UBERON:0005425,1.89e-10,1;UBERON:0003076,3.48e-10,15;UBERON:0003057,3.48e-10,15;UBERON:0002038,4.75e-10,1;UBERON:0009661,4.75e-10,1;UBERON:0002950,4.75e-10,1;UBERON:0001891,4.75e-10,1;UBERON:0009616,4.75e-10,1;UBERON:0010286,4.75e-10,1;UBERON:0002680,5.57e-10,9;UBERON:0001895,5.57e-10,9;UBERON:0010092,5.57e-10,9;UBERON:0004733,1.33e-07,12;UBERON:0002028,1.33e-07,12;UBERON:0007277,1.33e-07,12;UBERON:0001049,3.59e-07,56;UBERON:0005068,3.59e-07,56;UBERON:0006241,3.59e-07,56;UBERON:0007135,3.59e-07,56|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0.125542639594803,0.305653622991805,0.246301768349837,0.314843125254717,0.393364276848904,0.767658796194425,0.309632246632152,0,0,0.369754010166788,0.542270404062111,0.853015394924529,0,0,0,0.434021741431704,0.223915474239924,0,0,0.290796477559129,0,0,0.464858073811369,0,0,0.575384784644301,0,0,0.344745680736619,0,0,0,0.272906150057846,0.224723484445085,0.306083892370903,0,0,0.329851300186716,0.398927315243264,0,0,0,0,0,0,0.217188844705117,0.605399502633369,0.736555271975129,0,0,0,0,0.112328631146495,0,0.16072558669708,0,0,0.182664153764634,0,0,0.889509253863555,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0.205601498999509,0,0,0,0,0.222820913770347,0,0.221533894583621,0,0,0,0.164437904603676,0,0,0,0,0,0.113309342697566,0,0.34362744548263,1.01207876807801,0,0,0,0.150575119077773,0.255973222308837,0,0,0,0.201606743224732,0.267440195783507,0.289648807765598,0,0,0,0.361439152384566,0,0,0,0,0.283604451492204,0.443458794925128,0,0.0654895377488563,0.364295288292542,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0,0,0,0,0,0,0.760272105718513,0.24406205754817,0,0,0.17859945656816,0.22452937262617,0,0,0,0,0,0,0,0,0.12663051166458,0.662045904066094,0,0,0,0,0,0.933633106199299,0.404132016209064,0,0,0,0.234321431833797,0,0,0,0.23486899728753,0.161872944368132,0.140450806702248,0,0,0,0,0,0,0.718618141816238,0.168336113954066,0.125118519871964,0,0,0,0.150238058906597,0,0.179389635688862,0.85422955527427,0.211931901159562,0.300091096084402,0.103052529238439,0.257640540045629,0.18611685633159,0.168776332241266,0.0974370051611986,0.504867548488229,0.460249493211497,0.161646056818812,0.355009592516614,0,0,0,0,0.573609190778008,0.121973706129595,0.132529768321485,0.69716365721711,0.414644220061482,0.504641701751257,0,0,0,0,0,0,0,0,0,0.220587945464788,0.217879444092406,0,0.404493924480493,0,0,0,0,0,0,0,0,0,0.441463099414651,0,0,0,0,0.201057944823262,0.185176890317059,0.325808305310325,0,0,0,0,0.144366447761074,0,0,0.790204397959275,0,0.246217006087397,0,0,0,0,0.141775097242386,0,0,0,0.492663237895943,0.088048434013226,0.207328115540772,0,0,0.063497894292169,0,0,0,0.102827492703324,0,0,0.336393253036082,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0,0,0,0.215627574859517,0.898401253958239,0,0,0.773288812777695,0,0.637938751653163,0,0,0.828831026872071,0,0,0,0.415941723061614,0,0,0,0,0,0,0,0,0.60818530127658,0.195801157462741,0,0,0,0,0.303127571446259,0,0,0,0.153461973288062,0.280660094433074,0.256278298511402,0,0,0,0,0,0.0821271560138091,0,0,0,0,0.276242966807689,0.114814448164607,0,0,0,0,0,0,0.1055516288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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=NA | |||
|TSSclassifier=W | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr12:70636673..70636700,- | |||
|id=chr12:70636673..70636700,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000764;5.94e-19;2!CL:0000558;5.94e-19;2!CL:0000167;1.03e-10;1!CL:0000164;1.03e-10;1!CL:0000502;1.03e-10;1!CL:0000172;1.03e-10;1!CL:0000173;1.03e-10;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000764,5.44e-19,2;CL:0000765,5.44e-19,2;CL:0000050,5.44e-19,2;CL:0000038,5.44e-19,2;CL:0000558,5.44e-19,2;CL:0000547,5.44e-19,2;CL:0000549,5.44e-19,2;CL:0000550,5.44e-19,2;CL:0000552,5.44e-19,2;CL:0000167,9.84e-11,1;CL:0000164,9.84e-11,1;CL:0000502,9.84e-11,1;CL:0000172,9.84e-11,1;CL:0000173,9.84e-11,1;CL:0002351,9.84e-11,1 | |||
|ontology_enrichment_development_v019=UBERON:0006215;8.08e-29;3!CL:0002351;1.03e-10;1!UBERON:0005425;2.38e-10;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:4430;1.03e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:4430,9.84e-11,1 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;1.00e-14;6!UBERON:0004732;1.10e-11;13!UBERON:0002038;2.38e-10;1!UBERON:0000941;2.38e-10;1!UBERON:0001785;2.38e-10;1!UBERON:0002464;2.38e-10;1!UBERON:0004904;2.38e-10;1!UBERON:0001021;2.38e-10;1!UBERON:0009661;2.38e-10;1!UBERON:0002950;2.38e-10;1!UBERON:0001891;2.38e-10;1!UBERON:0002680;5.40e-10;9!UBERON:0001895;5.40e-10;9!UBERON:0004733;1.30e-07;12!UBERON:0002028;1.30e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,1.05e-14,6;UBERON:0006215,1.05e-14,6;UBERON:0004732,1.06e-11,13;UBERON:0000941,1.89e-10,1;UBERON:0001785,1.89e-10,1;UBERON:0002464,1.89e-10,1;UBERON:0004904,1.89e-10,1;UBERON:0001021,1.89e-10,1;UBERON:0003902,1.89e-10,1;UBERON:0005425,1.89e-10,1;UBERON:0003076,3.48e-10,15;UBERON:0003057,3.48e-10,15;UBERON:0002038,4.75e-10,1;UBERON:0009661,4.75e-10,1;UBERON:0002950,4.75e-10,1;UBERON:0001891,4.75e-10,1;UBERON:0009616,4.75e-10,1;UBERON:0010286,4.75e-10,1;UBERON:0002680,5.57e-10,9;UBERON:0001895,5.57e-10,9;UBERON:0010092,5.57e-10,9;UBERON:0004733,1.33e-07,12;UBERON:0002028,1.33e-07,12;UBERON:0007277,1.33e-07,12;UBERON:0001049,3.59e-07,56;UBERON:0005068,3.59e-07,56;UBERON:0006241,3.59e-07,56;UBERON:0007135,3.59e-07,56 | |||
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| |||
|short_description=p@chr12:70636673..70636700,- | |||
}} |
Revision as of 00:17, 11 September 2013
Short description: | p@chr12:70636673..70636700, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr12:70636673..70636700, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
erythroid lineage cell | 5.44e-19 | 2 |
erythroblast | 5.44e-19 | 2 |
megakaryocyte-erythroid progenitor cell | 5.44e-19 | 2 |
erythroid progenitor cell | 5.44e-19 | 2 |
reticulocyte | 5.44e-19 | 2 |
proerythroblast | 5.44e-19 | 2 |
basophilic erythroblast | 5.44e-19 | 2 |
polychromatophilic erythroblast | 5.44e-19 | 2 |
orthochromatic erythroblast | 5.44e-19 | 2 |
peptide hormone secreting cell | 9.84e-11 | 1 |
enteroendocrine cell | 9.84e-11 | 1 |
type D enteroendocrine cell | 9.84e-11 | 1 |
somatostatin secreting cell | 9.84e-11 | 1 |
pancreatic D cell | 9.84e-11 | 1 |
progenitor cell of endocrine pancreas | 9.84e-11 | 1 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 1.05e-14 | 6 |
rhombic lip | 1.05e-14 | 6 |
segmental subdivision of nervous system | 1.06e-11 | 13 |
cranial nerve II | 1.89e-10 | 1 |
cranial nerve | 1.89e-10 | 1 |
nerve trunk | 1.89e-10 | 1 |
nerve connecting eye with brain | 1.89e-10 | 1 |
nerve | 1.89e-10 | 1 |
retinal neural layer | 1.89e-10 | 1 |
presumptive neural retina | 1.89e-10 | 1 |
posterior neural tube | 3.48e-10 | 15 |
chordal neural plate | 3.48e-10 | 15 |
substantia nigra | 4.75e-10 | 1 |
midbrain nucleus | 4.75e-10 | 1 |
regional part of midbrain | 4.75e-10 | 1 |
midbrain | 4.75e-10 | 1 |
presumptive midbrain | 4.75e-10 | 1 |
midbrain neural tube | 4.75e-10 | 1 |
regional part of metencephalon | 5.57e-10 | 9 |
metencephalon | 5.57e-10 | 9 |
future metencephalon | 5.57e-10 | 9 |
segmental subdivision of hindbrain | 1.33e-07 | 12 |
hindbrain | 1.33e-07 | 12 |
presumptive hindbrain | 1.33e-07 | 12 |
neural tube | 3.59e-07 | 56 |
neural rod | 3.59e-07 | 56 |
future spinal cord | 3.59e-07 | 56 |
neural keel | 3.59e-07 | 56 |
Ontology term | p-value | n |
---|---|---|
somatostatinoma | 9.84e-11 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.