FFCP PHASE1:Hg19::chr12:208292..208304,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C41|description=CAGE_peak_at_chr12:208292..208304,+|id=chr12:208292..208304,+|ontology_enrichment_celltype=CL:0002322!9.53e-29!5;CL:0002586!1.18e-28!3;CL:0000147!4.34e-23!14;CL:0000149!1.16e-21!4;CL:0000325!5.59e-14!39;CL:0002615!4.29e-13!3;CL:0000148!1.23e-08!10;CL:0000541!1.23e-08!10|ontology_enrichment_celltype_v019=CL:0002586;5.96e-34;3!CL:0000149;7.14e-26;4!CL:0000147;2.00e-08;14|ontology_enrichment_celltype_v019_2=CL:0002586,5.96e-34,3;CL:0000149,7.14e-26,4;CL:0000147,2.00e-08,14|ontology_enrichment_development_v019=UBERON:0003056;4.27e-34;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000966!2.81e-30!5;UBERON:0005388!2.81e-30!5;UBERON:0001802!2.81e-30!5;UBERON:0001781!1.18e-28!3;UBERON:0001782!1.18e-28!3;UBERON:0005424!1.18e-28!3;UBERON:0001896!4.03e-13!3;UBERON:0005290!4.03e-13!3;UBERON:0010096!4.03e-13!3;UBERON:0007625!3.20e-08!11;UBERON:0000019!4.05e-08!19;UBERON:0000047!4.05e-08!19;UBERON:0004088!4.05e-08!19;UBERON:0003072!4.05e-08!19;UBERON:0003071!4.05e-08!19;UBERON:0004128!4.05e-08!19;UBERON:0000970!1.02e-07!20;UBERON:0002104!2.35e-07!21;UBERON:0001456!2.35e-07!21;UBERON:0003688!5.58e-07!6;UBERON:0002358!5.58e-07!6;UBERON:0003684!5.58e-07!6;UBERON:0001178!5.58e-07!6|ontology_enrichment_uberon_v019=UBERON:0000966;3.49e-79;5!UBERON:0005388;3.49e-79;5!UBERON:0001802;3.49e-79;5!UBERON:0001781;5.96e-34;3!UBERON:0001782;5.96e-34;3!UBERON:0000019;5.37e-22;19!UBERON:0000047;5.37e-22;19!UBERON:0004088;5.37e-22;19!UBERON:0010230;5.37e-22;19!UBERON:0000970;5.71e-21;20!UBERON:0002104;4.86e-20;21!UBERON:0001456;4.86e-20;21!UBERON:0000020;2.02e-18;23!UBERON:0001032;1.03e-17;24!UBERON:0004456;1.03e-17;24!UBERON:0007625;2.37e-10;11!UBERON:0001444;1.53e-08;48!UBERON:0000033;1.99e-08;50!UBERON:0000153;7.93e-07;54|ontology_enrichment_uberon_v019_2=UBERON:0000966,2.83e-66,6;UBERON:0005388,2.83e-66,6;UBERON:0001802,2.83e-66,6;UBERON:0001782,5.96e-34,3;UBERON:0005424,5.96e-34,3;UBERON:0001781,7.14e-26,4;UBERON:0000019,5.71e-21,20;UBERON:0000047,5.71e-21,20;UBERON:0010312,5.71e-21,20;UBERON:0004088,5.71e-21,20;UBERON:0010230,5.71e-21,20;UBERON:0003072,5.71e-21,20;UBERON:0004128,5.71e-21,20;UBERON:0003071,5.71e-21,20;UBERON:0000970,4.86e-20,21;UBERON:0002104,4.86e-20,21;UBERON:0001456,3.41e-19,22;UBERON:0000020,1.03e-17,24;UBERON:0001032,1.03e-17,24;UBERON:0004456,1.03e-17,24;UBERON:0005085,5.04e-14,31;UBERON:0007625,2.37e-10,11;UBERON:0001444,2.38e-09,49;UBERON:0000033,2.46e-08,56;UBERON:0000153,1.20e-07,62;UBERON:0007811,1.20e-07,62;UBERON:0003056,1.20e-07,61|phase1_expression=0,0,0.140954404095971,0,0.446961094427288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0.232387885739037,0.10366105501537,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3080511260475,0.328014645699706,0.650756789328606,0,0,0,0,0,0,0,0,0,0,0.322260734604821,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.557216921387392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217294743844016,0,0,0,0,0,0,0,0,0.167821586975843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,4.00268647389276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245148321753905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436350690340377,0,0,0,0,0,0,0,0,0,0,0.50141507858475,0,0,0,0,0,0,0.0645889098360061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr12:208292..208304,+}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C41 | |||
|description=CAGE_peak_at_chr12:208292..208304,+ | |||
|id=chr12:208292..208304,+ | |||
|ontology_enrichment_celltype=CL:0002322!9.53e-29!5;CL:0002586!1.18e-28!3;CL:0000147!4.34e-23!14;CL:0000149!1.16e-21!4;CL:0000325!5.59e-14!39;CL:0002615!4.29e-13!3;CL:0000148!1.23e-08!10;CL:0000541!1.23e-08!10 | |||
|ontology_enrichment_celltype_v019=CL:0002586;5.96e-34;3!CL:0000149;7.14e-26;4!CL:0000147;2.00e-08;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0002586,5.96e-34,3;CL:0000149,7.14e-26,4;CL:0000147,2.00e-08,14 | |||
|ontology_enrichment_development_v019=UBERON:0003056;4.27e-34;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000966!2.81e-30!5;UBERON:0005388!2.81e-30!5;UBERON:0001802!2.81e-30!5;UBERON:0001781!1.18e-28!3;UBERON:0001782!1.18e-28!3;UBERON:0005424!1.18e-28!3;UBERON:0001896!4.03e-13!3;UBERON:0005290!4.03e-13!3;UBERON:0010096!4.03e-13!3;UBERON:0007625!3.20e-08!11;UBERON:0000019!4.05e-08!19;UBERON:0000047!4.05e-08!19;UBERON:0004088!4.05e-08!19;UBERON:0003072!4.05e-08!19;UBERON:0003071!4.05e-08!19;UBERON:0004128!4.05e-08!19;UBERON:0000970!1.02e-07!20;UBERON:0002104!2.35e-07!21;UBERON:0001456!2.35e-07!21;UBERON:0003688!5.58e-07!6;UBERON:0002358!5.58e-07!6;UBERON:0003684!5.58e-07!6;UBERON:0001178!5.58e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0000966;3.49e-79;5!UBERON:0005388;3.49e-79;5!UBERON:0001802;3.49e-79;5!UBERON:0001781;5.96e-34;3!UBERON:0001782;5.96e-34;3!UBERON:0000019;5.37e-22;19!UBERON:0000047;5.37e-22;19!UBERON:0004088;5.37e-22;19!UBERON:0010230;5.37e-22;19!UBERON:0000970;5.71e-21;20!UBERON:0002104;4.86e-20;21!UBERON:0001456;4.86e-20;21!UBERON:0000020;2.02e-18;23!UBERON:0001032;1.03e-17;24!UBERON:0004456;1.03e-17;24!UBERON:0007625;2.37e-10;11!UBERON:0001444;1.53e-08;48!UBERON:0000033;1.99e-08;50!UBERON:0000153;7.93e-07;54 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000966,2.83e-66,6;UBERON:0005388,2.83e-66,6;UBERON:0001802,2.83e-66,6;UBERON:0001782,5.96e-34,3;UBERON:0005424,5.96e-34,3;UBERON:0001781,7.14e-26,4;UBERON:0000019,5.71e-21,20;UBERON:0000047,5.71e-21,20;UBERON:0010312,5.71e-21,20;UBERON:0004088,5.71e-21,20;UBERON:0010230,5.71e-21,20;UBERON:0003072,5.71e-21,20;UBERON:0004128,5.71e-21,20;UBERON:0003071,5.71e-21,20;UBERON:0000970,4.86e-20,21;UBERON:0002104,4.86e-20,21;UBERON:0001456,3.41e-19,22;UBERON:0000020,1.03e-17,24;UBERON:0001032,1.03e-17,24;UBERON:0004456,1.03e-17,24;UBERON:0005085,5.04e-14,31;UBERON:0007625,2.37e-10,11;UBERON:0001444,2.38e-09,49;UBERON:0000033,2.46e-08,56;UBERON:0000153,1.20e-07,62;UBERON:0007811,1.20e-07,62;UBERON:0003056,1.20e-07,61 | |||
|phase1_expression=0,0,0.140954404095971,0,0.446961094427288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0.232387885739037,0.10366105501537,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3080511260475,0.328014645699706,0.650756789328606,0,0,0,0,0,0,0,0,0,0,0.322260734604821,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.557216921387392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217294743844016,0,0,0,0,0,0,0,0,0.167821586975843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,4.00268647389276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245148321753905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436350690340377,0,0,0,0,0,0,0,0,0,0,0.50141507858475,0,0,0,0,0,0,0.0645889098360061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr12:208292..208304,+ | |||
}} |
Revision as of 22:06, 10 September 2013
Short description: | p@chr12:208292..208304, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr12:208292..208304, + |
Coexpression cluster: | C41_retina_eye_medulla_Retinal_medulloblastoma_kidney_pineal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
retinal pigment epithelial cell | 5.96e-34 | 3 |
visual pigment cell | 7.14e-26 | 4 |
pigment cell | 2.00e-08 | 14 |
Ontology term | p-value | n |
---|---|---|
retina | 2.83e-66 | 6 |
photoreceptor array | 2.83e-66 | 6 |
posterior segment of eyeball | 2.83e-66 | 6 |
pigmented layer of retina | 5.96e-34 | 3 |
presumptive retinal pigmented epithelium | 5.96e-34 | 3 |
layer of retina | 7.14e-26 | 4 |
camera-type eye | 5.71e-21 | 20 |
simple eye | 5.71e-21 | 20 |
immature eye | 5.71e-21 | 20 |
ocular region | 5.71e-21 | 20 |
eyeball of camera-type eye | 5.71e-21 | 20 |
optic cup | 5.71e-21 | 20 |
optic vesicle | 5.71e-21 | 20 |
eye primordium | 5.71e-21 | 20 |
eye | 4.86e-20 | 21 |
visual system | 4.86e-20 | 21 |
face | 3.41e-19 | 22 |
sense organ | 1.03e-17 | 24 |
sensory system | 1.03e-17 | 24 |
entire sense organ system | 1.03e-17 | 24 |
ectodermal placode | 5.04e-14 | 31 |
pigment epithelium of eye | 2.37e-10 | 11 |
subdivision of head | 2.38e-09 | 49 |
head | 2.46e-08 | 56 |
anterior region of body | 1.20e-07 | 62 |
craniocervical region | 1.20e-07 | 62 |
pre-chordal neural plate | 1.20e-07 | 61 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.