FFCP PHASE1:Hg19::chr12:120805876..120805897,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4440|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=7330|TSSclassifier=S|UniProt=|association_with_transcript=-4bp_to_ENST00000546985_5end|coexpression_cluster_id=C85|description=CAGE_peak_6_at_MSI1_5end|id=chr12:120805876..120805897,-|ontology_enrichment_celltype=CL:0000133!1.15e-12!59;CL:0002322!1.20e-12!5;CL:0000221!1.15e-09!71;CL:0002319!2.20e-09!25;CL:0002605!1.21e-08!3;CL:0000047!3.27e-08!8;CL:0000064!3.85e-08!3;CL:0005012!3.85e-08!3;CL:0000067!3.85e-08!3;CL:0002304!3.85e-08!3;CL:0000540!2.55e-07!6;CL:0000031!2.55e-07!6;CL:0000404!2.55e-07!6;CL:0000333!8.13e-07!41|ontology_enrichment_celltype_v019=CL:0000540;1.98e-20;6!CL:0000404;1.98e-20;6!CL:0002319;2.51e-17;25!CL:0000047;6.14e-08;2|ontology_enrichment_celltype_v019_2=CL:0000047,7.78e-27,8;CL:0000540,1.42e-20,6;CL:0000031,1.42e-20,6;CL:0000404,1.42e-20,6;CL:0002319,1.82e-17,25;CL:0000133,1.14e-16,59;CL:0000221,1.40e-13,72|ontology_enrichment_development_v019=CL:0000031;1.98e-20;6!CL:0000133;1.08e-10;59|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!2.85e-39!94;UBERON:0001016!2.85e-39!94;UBERON:0001017!4.33e-36!82;UBERON:0005743!5.59e-36!86;UBERON:0000955!2.52e-28!69;UBERON:0006238!2.52e-28!69;UBERON:0001049!2.96e-27!57;UBERON:0005068!2.96e-27!57;UBERON:0006241!2.96e-27!57;UBERON:0007135!2.96e-27!57;UBERON:0003075!1.85e-26!86;UBERON:0007284!1.85e-26!86;UBERON:0002616!5.08e-26!59;UBERON:0002346!7.75e-25!90;UBERON:0004121!2.16e-22!169;UBERON:0003056!3.02e-22!61;UBERON:0000924!1.42e-21!173;UBERON:0006601!1.42e-21!173;UBERON:0002780!7.15e-21!41;UBERON:0001890!7.15e-21!41;UBERON:0006240!7.15e-21!41;UBERON:0000033!2.80e-20!123;UBERON:0003080!3.03e-20!42;UBERON:0000153!7.66e-19!129;UBERON:0007811!7.66e-19!129;UBERON:0002020!1.99e-18!34;UBERON:0003528!1.99e-18!34;UBERON:0002791!3.02e-17!33;UBERON:0001893!1.29e-16!34;UBERON:0000956!1.88e-16!25;UBERON:0000203!1.88e-16!25;UBERON:0001869!1.03e-15!32;UBERON:0002619!1.96e-11!22;UBERON:0001950!1.31e-10!20;UBERON:0007023!1.64e-09!115;UBERON:0003076!3.71e-08!15;UBERON:0003057!3.71e-08!15;UBERON:0001778!3.85e-08!3;UBERON:0001775!3.85e-08!3;UBERON:0004733!5.65e-08!12;UBERON:0002028!5.65e-08!12;UBERON:0007277!5.65e-08!12;UBERON:0000013!7.91e-08!5;UBERON:0002410!7.91e-08!5;UBERON:0002021!1.14e-07!5;UBERON:0000922!1.83e-07!612;UBERON:0004732!2.77e-07!13;UBERON:0000988!7.92e-07!3|ontology_enrichment_uberon_v019=UBERON:0001905;2.38e-27;2!UBERON:0002757;2.38e-27;2!UBERON:0010134;2.38e-27;2!UBERON:0005408;2.38e-27;2!UBERON:0001899;2.38e-27;2!UBERON:0003296;3.37e-14;4!UBERON:0010133;3.37e-14;4!UBERON:0002784;3.37e-14;4!UBERON:0001894;1.65e-08;7|ontology_enrichment_uberon_v019_2=UBERON:0001905,7.96e-27,2;UBERON:0002757,7.96e-27,2;UBERON:0010134,7.96e-27,2;UBERON:0005408,7.96e-27,2;UBERON:0001899,7.96e-27,2;UBERON:0003296,6.13e-14,4;UBERON:0010133,6.13e-14,4;UBERON:0002784,6.13e-14,4;UBERON:0001016,9.81e-11,89;UBERON:0001017,1.93e-09,81;UBERON:0001894,2.32e-08,7;UBERON:0006222,2.32e-08,7;UBERON:0004121,6.11e-08,171;UBERON:0000924,6.11e-08,171;UBERON:0006601,6.11e-08,171|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246242116153576,0,0,1.71741592278634,0.821246550437305,0.627713197974014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03988298880475,0.221729397462564,0.614843499851882,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.302714855289863,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.365921118388786,0.530119073285941,1.04574548582567,0.518305275076852,0.504641701751257,0.72995471815166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.55046890945169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27047312111232,0,0,1.17261385734044,1.91381625495949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0,0,0,0,0,0,0.15350367472613,0,0,0,0.170453254832202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0.211125408127993,0,0,0.755798243562828,0,0,0,0,0,0,0,0,0,0.969332746095218,0.185536196323703,0,0,0,0,0,0,0,0,0,0.520874984799877,0,0.120596438625408,0,0.110579259931225,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216388639742091,0,0,0,1.77912677208373,0.247127877893006,0.417687798021821,0.471807930864739,0,0,0,0,0,0,0,0.91821828489147,0,0.300646838828985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1299037039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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4440 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7330 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-4bp_to_ENST00000546985_5end | |||
|coexpression_cluster_id=C85 | |||
|description=CAGE_peak_6_at_MSI1_5end | |||
|id=chr12:120805876..120805897,- | |||
|ontology_enrichment_celltype=CL:0000133!1.15e-12!59;CL:0002322!1.20e-12!5;CL:0000221!1.15e-09!71;CL:0002319!2.20e-09!25;CL:0002605!1.21e-08!3;CL:0000047!3.27e-08!8;CL:0000064!3.85e-08!3;CL:0005012!3.85e-08!3;CL:0000067!3.85e-08!3;CL:0002304!3.85e-08!3;CL:0000540!2.55e-07!6;CL:0000031!2.55e-07!6;CL:0000404!2.55e-07!6;CL:0000333!8.13e-07!41 | |||
|ontology_enrichment_celltype_v019=CL:0000540;1.98e-20;6!CL:0000404;1.98e-20;6!CL:0002319;2.51e-17;25!CL:0000047;6.14e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,7.78e-27,8;CL:0000540,1.42e-20,6;CL:0000031,1.42e-20,6;CL:0000404,1.42e-20,6;CL:0002319,1.82e-17,25;CL:0000133,1.14e-16,59;CL:0000221,1.40e-13,72 | |||
|ontology_enrichment_development_v019=CL:0000031;1.98e-20;6!CL:0000133;1.08e-10;59 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.85e-39!94;UBERON:0001016!2.85e-39!94;UBERON:0001017!4.33e-36!82;UBERON:0005743!5.59e-36!86;UBERON:0000955!2.52e-28!69;UBERON:0006238!2.52e-28!69;UBERON:0001049!2.96e-27!57;UBERON:0005068!2.96e-27!57;UBERON:0006241!2.96e-27!57;UBERON:0007135!2.96e-27!57;UBERON:0003075!1.85e-26!86;UBERON:0007284!1.85e-26!86;UBERON:0002616!5.08e-26!59;UBERON:0002346!7.75e-25!90;UBERON:0004121!2.16e-22!169;UBERON:0003056!3.02e-22!61;UBERON:0000924!1.42e-21!173;UBERON:0006601!1.42e-21!173;UBERON:0002780!7.15e-21!41;UBERON:0001890!7.15e-21!41;UBERON:0006240!7.15e-21!41;UBERON:0000033!2.80e-20!123;UBERON:0003080!3.03e-20!42;UBERON:0000153!7.66e-19!129;UBERON:0007811!7.66e-19!129;UBERON:0002020!1.99e-18!34;UBERON:0003528!1.99e-18!34;UBERON:0002791!3.02e-17!33;UBERON:0001893!1.29e-16!34;UBERON:0000956!1.88e-16!25;UBERON:0000203!1.88e-16!25;UBERON:0001869!1.03e-15!32;UBERON:0002619!1.96e-11!22;UBERON:0001950!1.31e-10!20;UBERON:0007023!1.64e-09!115;UBERON:0003076!3.71e-08!15;UBERON:0003057!3.71e-08!15;UBERON:0001778!3.85e-08!3;UBERON:0001775!3.85e-08!3;UBERON:0004733!5.65e-08!12;UBERON:0002028!5.65e-08!12;UBERON:0007277!5.65e-08!12;UBERON:0000013!7.91e-08!5;UBERON:0002410!7.91e-08!5;UBERON:0002021!1.14e-07!5;UBERON:0000922!1.83e-07!612;UBERON:0004732!2.77e-07!13;UBERON:0000988!7.92e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;2.38e-27;2!UBERON:0002757;2.38e-27;2!UBERON:0010134;2.38e-27;2!UBERON:0005408;2.38e-27;2!UBERON:0001899;2.38e-27;2!UBERON:0003296;3.37e-14;4!UBERON:0010133;3.37e-14;4!UBERON:0002784;3.37e-14;4!UBERON:0001894;1.65e-08;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,7.96e-27,2;UBERON:0002757,7.96e-27,2;UBERON:0010134,7.96e-27,2;UBERON:0005408,7.96e-27,2;UBERON:0001899,7.96e-27,2;UBERON:0003296,6.13e-14,4;UBERON:0010133,6.13e-14,4;UBERON:0002784,6.13e-14,4;UBERON:0001016,9.81e-11,89;UBERON:0001017,1.93e-09,81;UBERON:0001894,2.32e-08,7;UBERON:0006222,2.32e-08,7;UBERON:0004121,6.11e-08,171;UBERON:0000924,6.11e-08,171;UBERON:0006601,6.11e-08,171 | |||
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|short_description=p6@MSI1 | |||
}} |
Revision as of 21:16, 10 September 2013
Short description: | p6@MSI1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_MSI1_5end |
Coexpression cluster: | C85_neuroblastoma_carcinoid_retinoblastoma_small_pineal_rhabdomyosarcoma_medulloblastoma |
Association with transcript: | -4bp_to_ENST00000546985_5end |
EntrezGene: | MSI1 |
HGNC: | 7330 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 7.78e-27 | 8 |
neuron | 1.42e-20 | 6 |
neuroblast | 1.42e-20 | 6 |
electrically signaling cell | 1.42e-20 | 6 |
neural cell | 1.82e-17 | 25 |
neurectodermal cell | 1.14e-16 | 59 |
ectodermal cell | 1.40e-13 | 72 |
Ontology term | p-value | n |
---|---|---|
pineal body | 7.96e-27 | 2 |
regional part of epithalamus | 7.96e-27 | 2 |
secretory circumventricular organ | 7.96e-27 | 2 |
circumventricular organ | 7.96e-27 | 2 |
epithalamus | 7.96e-27 | 2 |
gland of diencephalon | 6.13e-14 | 4 |
neuroendocrine gland | 6.13e-14 | 4 |
regional part of diencephalon | 6.13e-14 | 4 |
nervous system | 9.81e-11 | 89 |
central nervous system | 1.93e-09 | 81 |
diencephalon | 2.32e-08 | 7 |
future diencephalon | 2.32e-08 | 7 |
ectoderm-derived structure | 6.11e-08 | 171 |
ectoderm | 6.11e-08 | 171 |
presumptive ectoderm | 6.11e-08 | 171 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.