FFCP PHASE1:Hg19::chr11:94227029..94227051,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4361|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=7230|TSSclassifier=S|UniProt=F5H256,P49959,Q05D78|association_with_transcript=0bp_to_ENST00000323977,ENST00000536754,NM_005590,NM_005591,uc001peu.2,uc001pev.2,uc009ywj.2_5end|description=CAGE_peak_2_at_MRE11A_5end|id=chr11:94227029..94227051,-|ontology_enrichment_celltype=CL:0000037!2.29e-14!172;CL:0000566!2.29e-14!172;CL:0002032!6.45e-13!165;CL:0000837!6.45e-13!165;CL:0000542!1.03e-12!53;CL:0000051!1.03e-12!53;CL:0000838!1.90e-12!52;CL:0000988!2.06e-12!182;CL:0000738!1.37e-09!140;CL:0002031!2.68e-08!124;CL:0002087!4.96e-07!119;CL:0000084!9.76e-07!25;CL:0000827!9.76e-07!25|ontology_enrichment_celltype_v019=CL:0000542;1.15e-07;53!CL:0000084;3.30e-07;25|ontology_enrichment_celltype_v019_2=CL:0000037,3.07e-13,168;CL:0000542,7.80e-13,53;CL:0000051,7.80e-13,53;CL:0000838,1.45e-12,52;CL:0000988,7.90e-12,177;CL:0002032,7.95e-12,161;CL:0000837,7.95e-12,161;CL:0000738,1.23e-08,136;CL:0002031,2.95e-07,120;CL:0000084,8.58e-07,25;CL:0000827,8.58e-07,25|ontology_enrichment_development_v019=CL:0000051;1.15e-07;53|ontology_enrichment_disease=DOID:162!1.38e-13!235;DOID:14566!3.41e-13!239;DOID:2531!1.34e-08!51;DOID:0060083!1.34e-08!51;DOID:0050686!2.62e-08!137;DOID:0050687!4.04e-08!143;DOID:305!9.19e-08!106|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=DOID:162,4.29e-13,235;DOID:14566,1.04e-12,239;DOID:2531,1.36e-08,51;DOID:0060083,1.36e-08,51;DOID:0050686,3.79e-08,137;DOID:0050687,8.37e-08,143;DOID:305,1.16e-07,106|ontology_enrichment_uberon=UBERON:0007023!6.05e-08!115|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.67e-07,114|phase1_expression=3.08853244759946,0.856402095563933,2.25527046553554,0,1.78784437770915,0,0,1.26343974685366,0.783556884599516,0.491467873003018,0,0.436882744260345,0,0.990130823680373,0.662794751455832,0,1.80808358407193,0,0.975865597581014,0.492484232307152,0.204000691244253,0.313454721478088,2.0036519099174,2.6006140763848,2.00868223351684,7.87058079203898,6.23964479819588,8.10721047530896,2.36018566109342,3.0706351847777,1.54816123316076,0.919421224478927,0,0,2.86628642147116,2.41687695228617,2.93600439334847,2.76997704265939,3.00816671205213,3.03815219002193,3.58264758783879,2.59114932815184,2.57575567634187,0.872389432677388,0.377875943688809,0.485168122375632,0.464858073811369,0.411167888021826,1.85823822537062,0.575384784644301,1.2808035326455,1.89185783910868,1.72372840368309,4.51839278508678,1.35426486594342,0.564727018627814,1.36453075028923,0.898893937780338,1.53041946185451,1.60464513538047,0,1.31940520074686,0.797854630486527,1.27867425159808,0.290209238628584,0,0.622822248995575,0.75374599577023,0.521482918420201,1.52032191293582,3.02699751316684,4.05105399586321,1.58231193720442,1.69004229049553,2.55125159958052,2.09658645508376,2.2465726229299,2.10247649978109,3.85741408072992,0.855038231223746,2.38700012638908,1.64397738388171,5.27988733383968,2.73069305631066,2.66852776159066,7.68114400619713,4.40435585739614,2.29900975981793,2.64417949113945,3.81621501814146,2.27685187643779,1.76171156811282,3.05818582500183,15.8605594294831,1.12101712596307,4.74091352595139,5.11445402295966,2.75107533924415,3.49522548299166,4.51403537554831,4.23698946623668,6.15482147455153,1.94826728407911,3.7879555340959,2.06224135232386,4.43067789167242,5.41607727530031,2.94610035369053,3.64166173167659,1.31550323682941,3.03985019564433,2.60822777161547,3.41059095272739,5.88589821797369,1.04535523804977,3.62589896632212,6.51474839123266,4.12352934579156,2.78321661221453,4.14135038621326,5.85975108470777,3.8018081777935,2.25862678616659,5.37543766848557,6.24653632761729,3.07810427657222,7.39015197228942,4.83856183739358,2.40696176205157,4.63438092424957,2.43806866313962,0.670700859703636,1.15076305659177,0.722878304769133,1.00267582127178,1.01392563272577,0.795285947051099,0,2.17430079477356,1.99556457716308,1.14185221401064,2.22664428346111,0,0,3.8945687238562,2.43781632218974,2.39324328933957,3.81584998888547,5.71994910780128,8.54352253057999,1.19257444420023,1.72046919021225,0,0,0.838998872419812,0.825354125820202,1.25396979922086,1.03366703667732,1.77883131343355,2.34304428935269,1.20848795132744,2.28081631715554,0.24406205754817,0.735326160691737,0,2.41109266367015,1.34717623575702,1.80178368773316,0,1.89853131913626,0.549605231791222,5.27121669744253,0,0.872188104285069,1.49091585508596,1.77282716330412,4.63432132846266,2.29469296599051,1.06400514659507,2.24271040056923,0,1.2333377420858,2.8008993185979,2.02066008104532,1.47115712802113,0.454072282934794,0.576175924479999,0.468642863667593,3.1216007683032,1.1409436430889,1.49448680551801,1.64408298101271,2.26622122115384,2.94946694074722,2.44985005505872,1.47401180774122,1.44656093646072,3.56400857184616,1.48360157567134,0.910161361938026,0.718618141816238,3.03005005117319,1.87677779807946,2.49357703935765,0.877955241761676,1.22595118319608,1.05166641234618,1.92834711372036,3.40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0.942706188406504,3.92616934229891,5.64388160621463,1.2679671827502,2.0391253762538,3.10146929333517,1.93373663920732,11.193409463592,2.32120120187355,1.41157948686277,0.962896400270019,2.19100916473955,2.2936464170227,4.01350832824064,2.36657343289777,0.883889372481891,2.61810414204226,1.0580536810308,1.85997509083376,0,0.865253124247578,2.52332849670158,2.62237372712869,2.02717601618299,2.03977659483963,1.60330443159336,1.10273879441814,2.75778293221613,3.03114792872958,2.14371304124943,0.829169439458779,4.3441858261996,2.98527574661373,1.66645102024618,3.61697895081634,5.15220128655621,3.58821960257963,2.99141643907375,2.42540626749863,1.52401723527873,1.02669990325584,3.56965880977314,2.07994395638761,2.99394320891412,5.61682553415724,1.49418284228802,3.8614456457388,1.43720323370539,4.69281884806909,2.2003459952916,0.813792356631477,6.65756774185513,2.41528552309231,4.16739039994203|short_description=p2@MRE11A}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=4361 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7230 | |||
|TSSclassifier=S | |||
|UniProt=F5H256,P49959,Q05D78 | |||
|association_with_transcript=0bp_to_ENST00000323977,ENST00000536754,NM_005590,NM_005591,uc001peu.2,uc001pev.2,uc009ywj.2_5end | |||
|description=CAGE_peak_2_at_MRE11A_5end | |||
|id=chr11:94227029..94227051,- | |||
|ontology_enrichment_celltype=CL:0000037!2.29e-14!172;CL:0000566!2.29e-14!172;CL:0002032!6.45e-13!165;CL:0000837!6.45e-13!165;CL:0000542!1.03e-12!53;CL:0000051!1.03e-12!53;CL:0000838!1.90e-12!52;CL:0000988!2.06e-12!182;CL:0000738!1.37e-09!140;CL:0002031!2.68e-08!124;CL:0002087!4.96e-07!119;CL:0000084!9.76e-07!25;CL:0000827!9.76e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0000542;1.15e-07;53!CL:0000084;3.30e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,3.07e-13,168;CL:0000542,7.80e-13,53;CL:0000051,7.80e-13,53;CL:0000838,1.45e-12,52;CL:0000988,7.90e-12,177;CL:0002032,7.95e-12,161;CL:0000837,7.95e-12,161;CL:0000738,1.23e-08,136;CL:0002031,2.95e-07,120;CL:0000084,8.58e-07,25;CL:0000827,8.58e-07,25 | |||
|ontology_enrichment_development_v019=CL:0000051;1.15e-07;53 | |||
|ontology_enrichment_disease=DOID:162!1.38e-13!235;DOID:14566!3.41e-13!239;DOID:2531!1.34e-08!51;DOID:0060083!1.34e-08!51;DOID:0050686!2.62e-08!137;DOID:0050687!4.04e-08!143;DOID:305!9.19e-08!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,4.29e-13,235;DOID:14566,1.04e-12,239;DOID:2531,1.36e-08,51;DOID:0060083,1.36e-08,51;DOID:0050686,3.79e-08,137;DOID:0050687,8.37e-08,143;DOID:305,1.16e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0007023!6.05e-08!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.67e-07,114 | |||
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| |||
|short_description=p2@MRE11A | |||
}} |
Revision as of 20:13, 10 September 2013
Short description: | p2@MRE11A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_MRE11A_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000323977, ENST00000536754, NM_005590, NM_005591, uc001peu.2, uc001pev.2, uc009ywj.2_5end |
EntrezGene: | MRE11A |
HGNC: | 7230 |
UniProt: | F5H256P49959Q05D78 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 3.07e-13 | 168 |
lymphocyte | 7.80e-13 | 53 |
common lymphoid progenitor | 7.80e-13 | 53 |
lymphoid lineage restricted progenitor cell | 1.45e-12 | 52 |
hematopoietic cell | 7.90e-12 | 177 |
hematopoietic oligopotent progenitor cell | 7.95e-12 | 161 |
hematopoietic multipotent progenitor cell | 7.95e-12 | 161 |
leukocyte | 1.23e-08 | 136 |
hematopoietic lineage restricted progenitor cell | 2.95e-07 | 120 |
T cell | 8.58e-07 | 25 |
pro-T cell | 8.58e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.67e-07 | 114 |
Ontology term | p-value | n |
---|---|---|
cancer | 4.29e-13 | 235 |
disease of cellular proliferation | 1.04e-12 | 239 |
hematologic cancer | 1.36e-08 | 51 |
immune system cancer | 1.36e-08 | 51 |
organ system cancer | 3.79e-08 | 137 |
cell type cancer | 8.37e-08 | 143 |
carcinoma | 1.16e-07 | 106 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.