FFCP PHASE1:Hg19::chr11:65154082..65154139,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=83786|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=25462|TSSclassifier=S|UniProt=B4E2P1,E9PRP1,Q8N4M4,E9PS62|association_with_transcript=0bp_to_ENST00000355991,ENST00000416776,ENST00000526201,ENST00000528854,ENST00000531296,ENST00000533782_5end|description=CAGE_peak_1_at_FRMD8_5end|id=chr11:65154082..65154139,+|ontology_enrichment_celltype=CL:0002371!3.04e-14!591;CL:0002057!2.84e-12!42;CL:0000738!2.68e-11!140;CL:0000988!5.66e-11!182;CL:0000003!5.77e-11!722;CL:0000860!1.11e-10!45;CL:0000063!3.25e-10!578;CL:0000144!4.49e-10!625;CL:0000766!1.01e-09!76;CL:0000037!1.81e-09!172;CL:0000566!1.81e-09!172;CL:0000557!2.26e-09!71;CL:0002031!2.85e-09!124;CL:0002009!2.87e-09!65;CL:0002032!4.87e-09!165;CL:0000837!4.87e-09!165;CL:0000115!1.13e-08!35;CL:0002087!1.31e-08!119;CL:0002194!2.17e-08!63;CL:0000576!2.17e-08!63;CL:0000040!2.17e-08!63;CL:0000559!2.17e-08!63;CL:0000763!3.65e-08!112;CL:0000049!3.65e-08!112;CL:0000839!4.63e-08!70;CL:0002139!9.21e-08!24;CL:0002078!2.30e-07!44;CL:0000071!3.86e-07!18;CL:0002546!3.86e-07!18;CL:0000012!8.93e-07!682|ontology_enrichment_celltype_v019=CL:0000860;3.09e-11;33!CL:0002057;3.09e-11;33!CL:0000473;8.23e-09;39!CL:0000234;8.23e-09;39!CL:0000115;6.43e-08;36!CL:0002139;6.46e-08;24!CL:0000071;3.20e-07;18|ontology_enrichment_celltype_v019_2=CL:0000738,1.95e-12,136;CL:0000860,2.84e-12,42;CL:0002057,2.84e-12,42;CL:0000988,1.32e-11,177;CL:0000473,2.44e-11,48;CL:0000234,2.44e-11,48;CL:0000766,3.05e-11,72;CL:0000557,6.39e-11,67;CL:0002009,6.68e-11,61;CL:0000037,2.31e-10,168;CL:0002031,2.43e-10,120;CL:0002194,6.09e-10,59;CL:0000576,6.09e-10,59;CL:0000040,6.09e-10,59;CL:0000559,6.09e-10,59;CL:0002032,6.29e-10,161;CL:0000837,6.29e-10,161;CL:0002087,1.19e-09,115;CL:0000839,1.84e-09,66;CL:0000763,3.31e-09,108;CL:0000049,3.31e-09,108;CL:0000115,4.11e-09,36;CL:0002139,9.21e-08,24;CL:0002078,9.34e-08,45;CL:0000071,3.86e-07,18;CL:0002546,3.86e-07,18|ontology_enrichment_development_v019=CL:0002057;1.95e-09;42!CL:0002546;3.20e-07;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003081!1.70e-17!216;UBERON:0002193!3.41e-13!112;UBERON:0002390!6.34e-12!102;UBERON:0003061!6.34e-12!102;UBERON:0002371!1.81e-08!80;UBERON:0002405!2.47e-07!115;UBERON:0001986!3.86e-07!18;UBERON:0004638!3.86e-07!18;UBERON:0004852!3.86e-07!18;UBERON:0001474!3.97e-07!86;UBERON:0004535!6.92e-07!110|ontology_enrichment_uberon_v019=UBERON:0004638;3.20e-07;18!UBERON:0001986;3.20e-07;18!UBERON:0004852;3.20e-07;18|ontology_enrichment_uberon_v019_2=UBERON:0003081,1.25e-18,203;UBERON:0002193,1.19e-14,108;UBERON:0002390,2.29e-13,98;UBERON:0003061,2.29e-13,98;UBERON:0002405,8.98e-12,93;UBERON:0002371,8.52e-10,76;UBERON:0001474,3.03e-08,82;UBERON:0000926,3.28e-07,315;UBERON:0004120,3.28e-07,315;UBERON:0006603,3.28e-07,315;UBERON:0004535,3.44e-07,109;UBERON:0004638,3.86e-07,18;UBERON:0001986,3.86e-07,18;UBERON:0004852,3.86e-07,18;UBERON:0001009,6.71e-07,112;UBERON:0004765,7.92e-07,90|phase1_expression=25.798329856419,34.4701843464483,17.7602549160924,36.0263874071269,21.4541325325098,30.5318483435129,30.3959853801973,22.1101955699391,33.6929460377792,17.2013755551056,78.1537308129119,17.2568683982836,17.4086205630779,9.40624282496354,8.94772914465373,20.842079540005,13.2592796165275,11.684961446198,11.2224543721817,15.0207690853681,22.6440767281121,14.105462466514,12.0219114595044,14.0980657825071,14.0607756346179,14.3657202806148,14.9423072798901,13.2234112606981,14.5544782434094,13.8178583314997,18.8875670445613,35.8574277546782,41.2652108726203,26.6222887320087,13.0144896974907,8.95666164670756,12.3312184520636,10.5259127621057,17.4473669299023,22.3521196837327,12.5392665574358,10.3645973126073,9.78787157009909,48.7084099911542,57.437143440699,66.2254487042738,35.3292136096641,33.3045989297679,34.9968199111467,23.5907761704163,28.6899991312593,23.4117407589699,26.5454174167196,27.1103567105207,21.6682378550947,45.1781614902251,45.5753270596602,33.2590756978725,26.0171308515267,23.1068899494787,37.0815532963444,40.2418586227794,41.6879044429211,48.5896215607271,24.0873668061725,25.5323351111013,26.1585344578141,34.4210671401738,30.7674921867919,20.8501290916912,15.7403870684676,13.9945501675275,15.8231193720442,20.2805074859464,18.4965740969588,19.0789367412622,20.6684681309551,20.1237036407618,11.0900654820985,26.7911979116774,20.8862511059045,16.6224379925817,22.879511779972,21.8455444504853,14.2321480618169,20.9097809057589,12.8126715851524,15.518315878771,15.2040320740518,20.0351288452426,18.2148150115023,18.79159005987,17.9668417218858,25.1125524300149,17.9362740154092,14.7495087474043,13.5729741378545,22.0086027139532,22.204961891947,21.2326849146161,16.2961133316795,17.0441210064504,35.068811113424,19.6082404117906,27.103743487685,24.8117961933656,20.5810936461412,30.1014601355337,27.1824036400146,22.856868739911,27.6350017785848,14.2003512010176,16.9046682004749,12.8419597483062,20.9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,8.91058430092541,10.6336451472064,9.28067519756987,22.6914656558211,21.6014992918103,17.8565766695052,17.1742239270619,20.1895837165842,10.9793303332163,13.7242618479952,12.7887203062954,7.93470739292953,14.3543934080777,7.58683783970049,11.8198635113782,15.4400723580486,12.0606227268289,20.3192517837763,10.8031861431712,11.4880859644089,4.86858885317099,6.90860683462397,21.8779168447715,12.0284839452006,12.4710597657209,24.9785899789123,17.6650625796312,7.53502652346749,5.65277690133554,12.8900395248762,37.5976304207268,8.21526318644885,13.9494133525261,10.215287164203,37.1894019508718,10.2112040635194,10.5753134205605,2.55788742607303,4.63646689005732,13.0530731740394,4.6960144422566,13.578602396322,7.65269712366058,19.4579149886633,15.0834127852776,15.9002175326709,8.91137718514163,9.60684897942564,21.160556621441,15.6185193450132,8.54248693782912,5.6678630530234,12.2918071474006,8.82000366235247,9.83079615264701,6.5699389841007,9.52706309227921,22.8431072414647,12.9554988421354,6.84224395416894,26.5971467856435,27.1485315453295,18.306340582424,8.97467903878131,4.17724066444177,9.10044973026013,8.0682027481408,17.9748222583611,7.59529413996125,21.4541211938227,8.27994082815454,7.69928464649699,7.81078098613847,9.0942190460521,6.84890750094194,3.82882366312754,12.6099286377152,15.8787577084574,3.51742488719241,29.2575959294673,6.96412386641773,7.39824188881413,12.1393120847326,3.87025725297206,11.531308121143,16.9393961706995,3.77273620762321,6.86494303066,7.76118728041619,10.8738333613251,11.3456029929911,9.34067804921117,8.3271262655481,10.0897978792964,8.21842848458546,12.3078726994614,8.12177869407985,9.14899765461201,4.89842196371452,51.1462271619751,9.21448843203671,11.2239591062235,28.388614490336,23.900586793153,45.6231376797301,17.6393217116314,17.3948041073931,19.5990830946063,11.854837405346,19.9322975633324,13.9592873548944,7.64431151181946,31.5432317669774,10.7965256976767,14.9959047728191,8.41657488344263,12.7301880501746,6.95888658802919,20.3998617084839,9.12363907502212,10.5443910835525,8.20548626365223,5.53435801990904,4.17773963632631,19.4742068201009,16.5152698351002,12.0207758277177,10.3469805199535,8.08989461787888,7.54164950725203,10.600657224207,8.91139200981258,19.4421634688364,11.2151895693959,27.5372879680971,37.8367802404898,15.5908203242889,17.8553938605658,19.7621128160787,13.2398255037128,8.76403665895821,22.936464170227,18.6341458096887,7.25749186088649,9.17885117577348,1.74540276136151,16.3998320559774,22.3197010900051,22.6466058029395,19.4681952955705,4.28965844439268,8.52271461316825,23.0591271840815,7.64916223064863,3.20660886318673,4.77853477581194,5.76627340372463,13.5643869810649,12.8622782474966,15.7542193497168,16.3424133461794,16.6322505882765,6.90386851244847,14.2741490737573,17.7533682886154,10.5403950825777,10.3108396410627,11.7227969595767,17.8527733275508,8.55583252713203,22.2261774948139,17.500218115813,21.2902628189449,14.0013622010876,8.64491501609495,1.9307228228694,227.257761329665,11.7320471201727,10.8794885322751,12.6137815277879,19.9727032255654,17.9133676296013,26.2866163688651|short_description=p1@FRMD8}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=83786 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25462 | |||
|TSSclassifier=S | |||
|UniProt=B4E2P1,E9PRP1,Q8N4M4,E9PS62 | |||
|association_with_transcript=0bp_to_ENST00000355991,ENST00000416776,ENST00000526201,ENST00000528854,ENST00000531296,ENST00000533782_5end | |||
|description=CAGE_peak_1_at_FRMD8_5end | |||
|id=chr11:65154082..65154139,+ | |||
|ontology_enrichment_celltype=CL:0002371!3.04e-14!591;CL:0002057!2.84e-12!42;CL:0000738!2.68e-11!140;CL:0000988!5.66e-11!182;CL:0000003!5.77e-11!722;CL:0000860!1.11e-10!45;CL:0000063!3.25e-10!578;CL:0000144!4.49e-10!625;CL:0000766!1.01e-09!76;CL:0000037!1.81e-09!172;CL:0000566!1.81e-09!172;CL:0000557!2.26e-09!71;CL:0002031!2.85e-09!124;CL:0002009!2.87e-09!65;CL:0002032!4.87e-09!165;CL:0000837!4.87e-09!165;CL:0000115!1.13e-08!35;CL:0002087!1.31e-08!119;CL:0002194!2.17e-08!63;CL:0000576!2.17e-08!63;CL:0000040!2.17e-08!63;CL:0000559!2.17e-08!63;CL:0000763!3.65e-08!112;CL:0000049!3.65e-08!112;CL:0000839!4.63e-08!70;CL:0002139!9.21e-08!24;CL:0002078!2.30e-07!44;CL:0000071!3.86e-07!18;CL:0002546!3.86e-07!18;CL:0000012!8.93e-07!682 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.09e-11;33!CL:0002057;3.09e-11;33!CL:0000473;8.23e-09;39!CL:0000234;8.23e-09;39!CL:0000115;6.43e-08;36!CL:0002139;6.46e-08;24!CL:0000071;3.20e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.95e-12,136;CL:0000860,2.84e-12,42;CL:0002057,2.84e-12,42;CL:0000988,1.32e-11,177;CL:0000473,2.44e-11,48;CL:0000234,2.44e-11,48;CL:0000766,3.05e-11,72;CL:0000557,6.39e-11,67;CL:0002009,6.68e-11,61;CL:0000037,2.31e-10,168;CL:0002031,2.43e-10,120;CL:0002194,6.09e-10,59;CL:0000576,6.09e-10,59;CL:0000040,6.09e-10,59;CL:0000559,6.09e-10,59;CL:0002032,6.29e-10,161;CL:0000837,6.29e-10,161;CL:0002087,1.19e-09,115;CL:0000839,1.84e-09,66;CL:0000763,3.31e-09,108;CL:0000049,3.31e-09,108;CL:0000115,4.11e-09,36;CL:0002139,9.21e-08,24;CL:0002078,9.34e-08,45;CL:0000071,3.86e-07,18;CL:0002546,3.86e-07,18 | |||
|ontology_enrichment_development_v019=CL:0002057;1.95e-09;42!CL:0002546;3.20e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!1.70e-17!216;UBERON:0002193!3.41e-13!112;UBERON:0002390!6.34e-12!102;UBERON:0003061!6.34e-12!102;UBERON:0002371!1.81e-08!80;UBERON:0002405!2.47e-07!115;UBERON:0001986!3.86e-07!18;UBERON:0004638!3.86e-07!18;UBERON:0004852!3.86e-07!18;UBERON:0001474!3.97e-07!86;UBERON:0004535!6.92e-07!110 | |||
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| |||
|short_description=p1@FRMD8 | |||
}} |
Revision as of 18:54, 10 September 2013
Short description: | p1@FRMD8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_FRMD8_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000355991, ENST00000416776, ENST00000526201, ENST00000528854, ENST00000531296, ENST00000533782_5end |
EntrezGene: | FRMD8 |
HGNC: | 25462 |
UniProt: | B4E2P1E9PRP1Q8N4M4E9PS62 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 1.95e-12 | 136 |
classical monocyte | 2.84e-12 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.84e-12 | 42 |
hematopoietic cell | 1.32e-11 | 177 |
defensive cell | 2.44e-11 | 48 |
phagocyte | 2.44e-11 | 48 |
myeloid leukocyte | 3.05e-11 | 72 |
granulocyte monocyte progenitor cell | 6.39e-11 | 67 |
macrophage dendritic cell progenitor | 6.68e-11 | 61 |
hematopoietic stem cell | 2.31e-10 | 168 |
hematopoietic lineage restricted progenitor cell | 2.43e-10 | 120 |
monopoietic cell | 6.09e-10 | 59 |
monocyte | 6.09e-10 | 59 |
monoblast | 6.09e-10 | 59 |
promonocyte | 6.09e-10 | 59 |
hematopoietic oligopotent progenitor cell | 6.29e-10 | 161 |
hematopoietic multipotent progenitor cell | 6.29e-10 | 161 |
nongranular leukocyte | 1.19e-09 | 115 |
myeloid lineage restricted progenitor cell | 1.84e-09 | 66 |
myeloid cell | 3.31e-09 | 108 |
common myeloid progenitor | 3.31e-09 | 108 |
endothelial cell | 4.11e-09 | 36 |
endothelial cell of vascular tree | 9.21e-08 | 24 |
meso-epithelial cell | 9.34e-08 | 45 |
blood vessel endothelial cell | 3.86e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 3.86e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 1.25e-18 | 203 |
hemolymphoid system | 1.19e-14 | 108 |
hematopoietic system | 2.29e-13 | 98 |
blood island | 2.29e-13 | 98 |
immune system | 8.98e-12 | 93 |
bone marrow | 8.52e-10 | 76 |
bone element | 3.03e-08 | 82 |
mesoderm | 3.28e-07 | 315 |
mesoderm-derived structure | 3.28e-07 | 315 |
presumptive mesoderm | 3.28e-07 | 315 |
cardiovascular system | 3.44e-07 | 109 |
blood vessel endothelium | 3.86e-07 | 18 |
endothelium | 3.86e-07 | 18 |
cardiovascular system endothelium | 3.86e-07 | 18 |
circulatory system | 6.71e-07 | 112 |
skeletal element | 7.92e-07 | 90 |
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