FFCP PHASE1:Hg19::chr10:120967120..120967134,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2869|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4544|TSSclassifier=S|UniProt=Q5T060,P34947|association_with_transcript=19bp_to_ENST00000369106,ENST00000392870_5end|description=CAGE_peak_1_at_GRK5_5end|id=chr10:120967120..120967134,+|ontology_enrichment_celltype=CL:0002139!1.23e-10!24;CL:0000222!8.12e-09!119;CL:0000071!2.38e-08!18;CL:0002546!2.38e-08!18;CL:0000115!7.88e-08!35;CL:0000192!4.87e-07!42;CL:0000514!4.87e-07!42;CL:0000057!5.12e-07!75|ontology_enrichment_celltype_v019=CL:0002139;4.74e-12;24!CL:0000071;1.35e-08;18!CL:0000115;3.36e-08;36!CL:0000359;7.43e-07;32|ontology_enrichment_celltype_v019_2=CL:0002139,3.34e-12,24;CL:0000222,5.99e-11,121;CL:0000115,8.05e-10,36;CL:0000071,7.68e-09,18;CL:0002546,7.68e-09,18;CL:0000192,3.93e-08,43;CL:0000514,3.93e-08,43;CL:0002078,8.78e-08,45;CL:0000359,1.49e-07,32;CL:0000187,4.16e-07,55|ontology_enrichment_development_v019=CL:0002546;1.35e-08;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001009!1.12e-20!113;UBERON:0004535!1.05e-19!110;UBERON:0002049!4.94e-19!79;UBERON:0007798!4.94e-19!79;UBERON:0000055!4.90e-17!69;UBERON:0004872!3.24e-16!84;UBERON:0001981!2.29e-15!60;UBERON:0007500!2.29e-15!60;UBERON:0004537!2.29e-15!60;UBERON:0006965!2.29e-15!60;UBERON:0001637!3.84e-11!42;UBERON:0003509!3.84e-11!42;UBERON:0004572!3.84e-11!42;UBERON:0003914!5.72e-09!118;UBERON:0001986!2.38e-08!18;UBERON:0004638!2.38e-08!18;UBERON:0004852!2.38e-08!18;UBERON:0004573!7.05e-08!33;UBERON:0004571!7.05e-08!33;UBERON:0000490!1.81e-07!138;UBERON:0007100!2.37e-07!27;UBERON:0000487!4.50e-07!22;UBERON:0006914!5.26e-07!25|ontology_enrichment_uberon_v019=UBERON:0001637;7.07e-11;42!UBERON:0003509;7.07e-11;42!UBERON:0004572;7.07e-11;42!UBERON:0000055;8.28e-10;65!UBERON:0002049;7.80e-09;75!UBERON:0007798;7.80e-09;75!UBERON:0007500;1.06e-08;56!UBERON:0001981;1.06e-08;56!UBERON:0004537;1.06e-08;56!UBERON:0004638;1.35e-08;18!UBERON:0001986;1.35e-08;18!UBERON:0004852;1.35e-08;18!UBERON:0004573;2.34e-08;33!UBERON:0004571;2.34e-08;33!UBERON:0001009;1.57e-07;112|ontology_enrichment_uberon_v019_2=UBERON:0002049,1.08e-22,78;UBERON:0007798,1.08e-22,78;UBERON:0000055,1.33e-20,68;UBERON:0001009,2.66e-19,112;UBERON:0004535,1.39e-18,109;UBERON:0007500,6.51e-18,59;UBERON:0001981,6.51e-18,59;UBERON:0004537,6.51e-18,59;UBERON:0006965,6.51e-18,59;UBERON:0004872,8.47e-17,83;UBERON:0001637,6.13e-14,42;UBERON:0003509,6.13e-14,42;UBERON:0004572,6.13e-14,42;UBERON:0003914,1.27e-10,117;UBERON:0004573,9.10e-10,33;UBERON:0004571,9.10e-10,33;UBERON:0004638,7.68e-09,18;UBERON:0001986,7.68e-09,18;UBERON:0004852,7.68e-09,18;UBERON:0000490,4.35e-08,148;UBERON:0002385,2.22e-07,64;UBERON:0001015,2.22e-07,64;UBERON:0000383,2.22e-07,64;UBERON:0001134,3.19e-07,62;UBERON:0002036,3.19e-07,62;UBERON:0003082,3.19e-07,62;UBERON:0007524,6.00e-07,73;UBERON:0000486,6.75e-07,83;UBERON:0002329,7.05e-07,71;UBERON:0003059,7.05e-07,71;UBERON:0007282,7.05e-07,71;UBERON:0004290,7.05e-07,71;UBERON:0009618,7.05e-07,71;UBERON:0006914,7.90e-07,25|phase1_expression=0.908391896352783,0.856402095563933,2.81908808191942,1.0007329835313,2.68176656656373,6.10636966870258,0,1.26343974685366,1.04474251279935,0.737201809504527,0,0,0,0.123766352960047,0,0,0,0.730310090387373,0.487932798790507,0,0,0,0.286235987131057,0.958120975510189,0.376627918784408,0.0764134057479513,0.164201178899891,0.0787107813136792,3.93364276848904,3.45446458287491,1.54816123316076,0.919421224478927,0.30120591877825,0,0,0.142169232487422,0.293600439334847,0.553995408531877,0.200544447470142,0.651032612147555,0,0,0,0.436194716338694,1.13362783106643,0,0.232429036905685,0.822335776043652,0.309706370895104,0.28769239232215,0,0,1.03423704220986,1.29096936716765,1.35426486594342,0.564727018627814,0.272906150057846,0.224723484445085,0.306083892370903,0.641858054152187,0,0,0.199463657621632,0,0.290209238628584,1.13477044938228,1.24564449799115,0,0.521482918420201,0,0.605399502633369,1.10483290796269,0.949387162322653,0,0.637812899895131,0.419317291016752,0.44931452458598,0,0,0.855038231223746,0.59675003159727,0.547992461293902,0,1.09227722252426,0,1.70692089026603,0,0.574752439954483,1.32208974556972,0,1.1384259382189,2.34894875748376,1.91136614062614,0,2.80254281490768,0,3.540775862049,2.35806457649499,3.28962398399215,0.83593247695339,0.977766799900771,0.473447805734733,0,1.22551502573691,1.76763544484902,0.886135578334485,1.08321545506006,0.25618263945135,1.30059347559878,0.493313713811028,0.552700035571697,0.289803085735052,1.63115219478266,1.60524496853828,0,0.453237370790265,0,1.03088233644789,2.02415753615602,0.318565414324097,0,0,0.301150238155546,0.127986611154418,0,0.236777252044017,0,1.81446068902259,1.87208137048455,2.02754165435919,2.43806866313962,1.34140171940727,2.42938867502708,0.361439152384566,7.01873074890245,0.144846518960824,0.795285947051099,0.486634870302636,0.189069634328136,0,0.087834785693126,1.24430121722827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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=2869 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4544 | |||
|TSSclassifier=S | |||
|UniProt=Q5T060,P34947 | |||
|association_with_transcript=19bp_to_ENST00000369106,ENST00000392870_5end | |||
|description=CAGE_peak_1_at_GRK5_5end | |||
|id=chr10:120967120..120967134,+ | |||
|ontology_enrichment_celltype=CL:0002139!1.23e-10!24;CL:0000222!8.12e-09!119;CL:0000071!2.38e-08!18;CL:0002546!2.38e-08!18;CL:0000115!7.88e-08!35;CL:0000192!4.87e-07!42;CL:0000514!4.87e-07!42;CL:0000057!5.12e-07!75 | |||
|ontology_enrichment_celltype_v019=CL:0002139;4.74e-12;24!CL:0000071;1.35e-08;18!CL:0000115;3.36e-08;36!CL:0000359;7.43e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,3.34e-12,24;CL:0000222,5.99e-11,121;CL:0000115,8.05e-10,36;CL:0000071,7.68e-09,18;CL:0002546,7.68e-09,18;CL:0000192,3.93e-08,43;CL:0000514,3.93e-08,43;CL:0002078,8.78e-08,45;CL:0000359,1.49e-07,32;CL:0000187,4.16e-07,55 | |||
|ontology_enrichment_development_v019=CL:0002546;1.35e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001009!1.12e-20!113;UBERON:0004535!1.05e-19!110;UBERON:0002049!4.94e-19!79;UBERON:0007798!4.94e-19!79;UBERON:0000055!4.90e-17!69;UBERON:0004872!3.24e-16!84;UBERON:0001981!2.29e-15!60;UBERON:0007500!2.29e-15!60;UBERON:0004537!2.29e-15!60;UBERON:0006965!2.29e-15!60;UBERON:0001637!3.84e-11!42;UBERON:0003509!3.84e-11!42;UBERON:0004572!3.84e-11!42;UBERON:0003914!5.72e-09!118;UBERON:0001986!2.38e-08!18;UBERON:0004638!2.38e-08!18;UBERON:0004852!2.38e-08!18;UBERON:0004573!7.05e-08!33;UBERON:0004571!7.05e-08!33;UBERON:0000490!1.81e-07!138;UBERON:0007100!2.37e-07!27;UBERON:0000487!4.50e-07!22;UBERON:0006914!5.26e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;7.07e-11;42!UBERON:0003509;7.07e-11;42!UBERON:0004572;7.07e-11;42!UBERON:0000055;8.28e-10;65!UBERON:0002049;7.80e-09;75!UBERON:0007798;7.80e-09;75!UBERON:0007500;1.06e-08;56!UBERON:0001981;1.06e-08;56!UBERON:0004537;1.06e-08;56!UBERON:0004638;1.35e-08;18!UBERON:0001986;1.35e-08;18!UBERON:0004852;1.35e-08;18!UBERON:0004573;2.34e-08;33!UBERON:0004571;2.34e-08;33!UBERON:0001009;1.57e-07;112 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002049,1.08e-22,78;UBERON:0007798,1.08e-22,78;UBERON:0000055,1.33e-20,68;UBERON:0001009,2.66e-19,112;UBERON:0004535,1.39e-18,109;UBERON:0007500,6.51e-18,59;UBERON:0001981,6.51e-18,59;UBERON:0004537,6.51e-18,59;UBERON:0006965,6.51e-18,59;UBERON:0004872,8.47e-17,83;UBERON:0001637,6.13e-14,42;UBERON:0003509,6.13e-14,42;UBERON:0004572,6.13e-14,42;UBERON:0003914,1.27e-10,117;UBERON:0004573,9.10e-10,33;UBERON:0004571,9.10e-10,33;UBERON:0004638,7.68e-09,18;UBERON:0001986,7.68e-09,18;UBERON:0004852,7.68e-09,18;UBERON:0000490,4.35e-08,148;UBERON:0002385,2.22e-07,64;UBERON:0001015,2.22e-07,64;UBERON:0000383,2.22e-07,64;UBERON:0001134,3.19e-07,62;UBERON:0002036,3.19e-07,62;UBERON:0003082,3.19e-07,62;UBERON:0007524,6.00e-07,73;UBERON:0000486,6.75e-07,83;UBERON:0002329,7.05e-07,71;UBERON:0003059,7.05e-07,71;UBERON:0007282,7.05e-07,71;UBERON:0004290,7.05e-07,71;UBERON:0009618,7.05e-07,71;UBERON:0006914,7.90e-07,25 | |||
|phase1_expression=0.908391896352783,0.856402095563933,2.81908808191942,1.0007329835313,2.68176656656373,6.10636966870258,0,1.26343974685366,1.04474251279935,0.737201809504527,0,0,0,0.123766352960047,0,0,0,0.730310090387373,0.487932798790507,0,0,0,0.286235987131057,0.958120975510189,0.376627918784408,0.0764134057479513,0.164201178899891,0.0787107813136792,3.93364276848904,3.45446458287491,1.54816123316076,0.919421224478927,0.30120591877825,0,0,0.142169232487422,0.293600439334847,0.553995408531877,0.200544447470142,0.651032612147555,0,0,0,0.436194716338694,1.13362783106643,0,0.232429036905685,0.822335776043652,0.309706370895104,0.28769239232215,0,0,1.03423704220986,1.29096936716765,1.35426486594342,0.564727018627814,0.272906150057846,0.224723484445085,0.306083892370903,0.641858054152187,0,0,0.199463657621632,0,0.290209238628584,1.13477044938228,1.24564449799115,0,0.521482918420201,0,0.605399502633369,1.10483290796269,0.949387162322653,0,0.637812899895131,0.419317291016752,0.44931452458598,0,0,0.855038231223746,0.59675003159727,0.547992461293902,0,1.09227722252426,0,1.70692089026603,0,0.574752439954483,1.32208974556972,0,1.1384259382189,2.34894875748376,1.91136614062614,0,2.80254281490768,0,3.540775862049,2.35806457649499,3.28962398399215,0.83593247695339,0.977766799900771,0.473447805734733,0,1.22551502573691,1.76763544484902,0.886135578334485,1.08321545506006,0.25618263945135,1.30059347559878,0.493313713811028,0.552700035571697,0.289803085735052,1.63115219478266,1.60524496853828,0,0.453237370790265,0,1.03088233644789,2.02415753615602,0.318565414324097,0,0,0.301150238155546,0.127986611154418,0,0.236777252044017,0,1.81446068902259,1.87208137048455,2.02754165435919,2.43806866313962,1.34140171940727,2.42938867502708,0.361439152384566,7.01873074890245,0.144846518960824,0.795285947051099,0.486634870302636,0.189069634328136,0,0.087834785693126,1.24430121722827,0,0,0.324547393654683,0.174129737299267,0,0,0,0,6.95668425783468,2.58070378531837,3.12426451446835,3.95715559346807,1.67799774483962,1.37559020970034,5.22487416342026,2.06733407335463,2.13459757612026,2.67776490211736,3.22263453687318,5.32190474002959,3.1728067481262,1.83831540172934,0.81014194788176,0.714397826272638,0.673588117878509,0.225222960966644,7.66583187329416,9.49265659568129,3.66403487860815,7.9068250461638,19.3890132074163,0.436094052142534,0.496971951695318,1.39293562831038,1.19168262731897,0.573673241497627,1.41867352879343,1.12135520028461,0,0.98667019366864,0.311211035399766,1.0776853765575,0.980771418680752,13.6221684880438,10.94734256512,5.85803579584492,1.5608003841516,4.56377457235559,1.49448680551801,0.117434498643765,0,0.280901613404497,1.83738754129404,0.859840221182376,0.619954687054593,5.94001428641027,1.7308685049499,1.82032272387605,0,0.841680569770331,0.500474079487857,1.6623846929051,0.877955241761676,1.83892677479412,2.40380894250555,0.567160915800105,0.358779271377724,1.2813443329114,1.05965950579781,0.600182192168805,0.721367704669072,1.03056216018252,0.744467425326359,0.337552664482532,0.292311015483596,1.26216887122057,0.736399189138395,10.345347636404,0,0.403008392910561,0.508681776931463,1.54608682530637,1.36373060295417,1.72082757233402,0,0,0.116193942869518,0.310983165046111,0,0,0,0,0,0,0,0.118306800039844,0.168584690078102,0,0,0,0,0,0,0,0.738155454624648,1.40241773803446,2.057870056657,1.47008711385542,0,0,0.590789906681404,0,0,1.20097467208968,0.109750285408626,1.1240175325762,0.301586917234893,0.185176890317059,3.9096996637239,1.03993478527958,0,0,0.234817388471643,2.02113026865503,1.38895653772983,1.33177906564219,0,0,0,0,0,2.81201501960331,0.503946384596579,1.27597587518148,0,0,1.15014803749563,0,0,2.07328115540772,0.432359860250884,1.38866676769018,0.253991577168676,0.381988425558278,1.17217447210047,0,0.205654985406647,0.300343057843917,0.571652865261156,2.5790149399433,3.92364061949952,1.1734125731352,0.517086863031111,0,0,0.797814349754612,0,0.514414748524284,0,0,2.85955987316295,0.542621605391443,0,0.65147236858747,4.26470338491055,0,4.22015127883421,2.61460037580088,2.19940580600526,0,0,0,0.479249710983165,0,0,0.289562613335158,0,0.179060963239896,0,1.97030760201927,3.45004119775228,1.66845947163673,0.76228387266739,1.30139853857622,0,0.335032530668698,0,4.49404214368309,0,0.414415513436035,0.36807447515742,0.500170521059677,0.271265023699736,0.831883446123229,0.178428988797162,0,0.468565659970853,0.300946099727719,0,0,0,0,0.434418072340414,1.17480694477644,1.02943027143257,0.413536052245775,1.07857100409308,0.640365346820666,0,0,0.30239029332968,1.24053903909388,0,0.561320188866147,1.66580894032411,1.02341449813341,0.804269605718038,5.93672265779964,1.07946785661859,0.355123450626254,1.14978018419333,2.07701771673448,0.929683027679674,0.120859449591622,0.40101294060657,0,2.06666006696292,1.63882051206045,1.83574180943194,0,0,0,0,0.105551628892876,0,0.850468526382578,1.94324324491925,0,0,0,0,0,0,0,0,0,0,0,3.19427136107939,0,0,0,0,0,1.16004861950546,0.154048617114644,0.15350367472613,0,0,0.145016693914229,0.340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| |||
|short_description=p1@GRK5 | |||
}} |
Revision as of 12:01, 10 September 2013
Short description: | p1@GRK5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_GRK5_5end |
Coexpression cluster: | NA |
Association with transcript: | 19bp_to_ENST00000369106, ENST00000392870_5end |
EntrezGene: | GRK5 |
HGNC: | 4544 |
UniProt: | Q5T060P34947 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 3.34e-12 | 24 |
mesodermal cell | 5.99e-11 | 121 |
endothelial cell | 8.05e-10 | 36 |
blood vessel endothelial cell | 7.68e-09 | 18 |
embryonic blood vessel endothelial progenitor cell | 7.68e-09 | 18 |
smooth muscle cell | 3.93e-08 | 43 |
smooth muscle myoblast | 3.93e-08 | 43 |
meso-epithelial cell | 8.78e-08 | 45 |
vascular associated smooth muscle cell | 1.49e-07 | 32 |
muscle cell | 4.16e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
vasculature | 1.08e-22 | 78 |
vascular system | 1.08e-22 | 78 |
vessel | 1.33e-20 | 68 |
circulatory system | 2.66e-19 | 112 |
cardiovascular system | 1.39e-18 | 109 |
epithelial tube open at both ends | 6.51e-18 | 59 |
blood vessel | 6.51e-18 | 59 |
blood vasculature | 6.51e-18 | 59 |
vascular cord | 6.51e-18 | 59 |
splanchnic layer of lateral plate mesoderm | 8.47e-17 | 83 |
artery | 6.13e-14 | 42 |
arterial blood vessel | 6.13e-14 | 42 |
arterial system | 6.13e-14 | 42 |
epithelial tube | 1.27e-10 | 117 |
systemic artery | 9.10e-10 | 33 |
systemic arterial system | 9.10e-10 | 33 |
blood vessel endothelium | 7.68e-09 | 18 |
endothelium | 7.68e-09 | 18 |
cardiovascular system endothelium | 7.68e-09 | 18 |
unilaminar epithelium | 4.35e-08 | 148 |
muscle tissue | 2.22e-07 | 64 |
musculature | 2.22e-07 | 64 |
musculature of body | 2.22e-07 | 64 |
skeletal muscle tissue | 3.19e-07 | 62 |
striated muscle tissue | 3.19e-07 | 62 |
myotome | 3.19e-07 | 62 |
dense mesenchyme tissue | 6.00e-07 | 73 |
multilaminar epithelium | 6.75e-07 | 83 |
somite | 7.05e-07 | 71 |
presomitic mesoderm | 7.05e-07 | 71 |
presumptive segmental plate | 7.05e-07 | 71 |
dermomyotome | 7.05e-07 | 71 |
trunk paraxial mesoderm | 7.05e-07 | 71 |
squamous epithelium | 7.90e-07 | 25 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.