Personal tools

Coexpression cluster:C2094: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 9: Line 9:
|tfbs_overrepresentation=0.191353,0.00307981,0.814139,0.0631091,0.257053,0.363996,0.00165206,0.510252,0.043387,0.0341265,0.181435,0.000427152,0.243414,0.164339,0.0199865,0.0034297,0.183412,0.128744,5.99111e-05,0.141416,1.11198e-05,0.172742,0.107781,0.124486,0.0550418,0.276459,0.268949,0.119094,0.0186717,0.122514,0.26347,0.149094,0.0239693,0.000305554,0.0877018,1.70479e-07,0.788552,0.0568767,0.157159,0.0879352,0.126525,0.0326801,0.182216,0.2375,0.157881,0.0480278,0.0503649,0.234372,0.145553,0.158244,0.19996,1.19472e-06,0.0924421,0.000333321,0.255843,0.0508907,0.140644,0.273035,5.3427e-06,0.138225,0.0390464,0.194086,0.000535323,0.0999599,0.0720888,5.21665e-05,0.439574,0.0792005,0.113084,0.216289,0.00050917,0.0892037,0.116917,0.155921,0.00995563,0.0227583,0.126543,0.0578308,0.0493551,0.00965832,0.125428,0.290468,0.0562614,0.150119,0.368178,0.320801,0.0848546,0.268505,0.713984,0.0827752,0.112676,0.0655645,0.12511,0.0626609,0.112199,0.150351,0.327332,0.199405,0.121709,0.347653,0.0759036,0.0700593,0.184542,0.0491142,0.0437659,0.0541957,0.0883058,0.0184799,0.187509,0.34189,0.23573,0.0450707,0.194256,0.0235108,0.132631,0.0447483,0.0270258,0.0748174,0.180926,0.110194,0.215858,0.000347773,0.182323,0.112709,0.134107,0.228632,0.119051,0.0196757,0.110868,0.175735,0.078637,0.0985137,0.0755515,0.0302655,0.0142686,0.141472,0.085537,0.0730922,0.0438087,0.0052702,0.0302521,0.166414,0.262198,0.202388,0.0346699,0.0913381,0.129544,0.110696,0.0515825,0.157774,0.258146,0.186826,0.233377,0.0352845,0.0565357,0.153577,0.0984158,0.29227,9.88091e-07,0.0447121,0.291455,0.0081576,0.152417,0.192028,0.000978216,0.149398,0.0530169,0.166112,2.64977e-05,0.000170227,0.2321,0.179282,0.564569,0.0715212,0.105131,0.118265,7.8504e-08,0.234755,0.230552,0.0472274,0.205973,0.159869,0.0363736,0.0120302,0.0970713,0.155237,0.0304129,0.0532055,0.108938,0.224443,0.140245,0.241581,0.160458,0.292792,0.147332,0.0622664,0.102951,0.0795624,0.0891668,2.11932e-05,0.117261,0.0797088,0.0408965,0.0799774,0.00107795,0.0616625,0.346995,0.197158,0.0387454,0.0288641,0.0606832,0.136664,0.158184,0.147626,0.0143681,0.218801,0.00190756,0.132273,0.000101987,0.134907,0.00121673,4.12454e-06,0.202467,0.208718,0.00488969,0.165147,0.180711,7.81501e-06,0.0797807,0.0790532,0.0275851,0.476758,0.0553945,0.000183963,0.125804,0.00780206,0.0624687,0.0634515,0.00188251,0.275612,0.235571,0.435782,0.128998,0.109226,0.151958,0.178155,0.00596033,0.146021,0.0253438,0.15291,0.0229006,0.238926,0.239646,0.128521,0.1286,0.0230819,0.14037,0.0370757,0.0916845,3.82222e-06,0.0816983,0.226367,0.211672,1.15213e-09,0.0457509,0.106603,0.00590953,0.12083,0.154253,0.0993998,0.00105579,0.0834863,0.324356,0.18736,0.113754,0.0504034,0.169684,0.000218453,0.0880794,0.149583,0.153844,0.000985425,0.20358,0.376043,0.00238365,0.381628,0.332539,0.186966,0.0255379,0.389374,0.000346582,0.414547,0.489273,0.413223,0.639461,0.720642,0.0678774,0.369161,0.500422,0.49089,0.687176,0.123196,0.241524,0.00337546,0.234628,0.168228,0.143893,0.41477,2.42457e-05,0.170724,0.00400444,0.201843,0.751064,0.632838,0.624969,0.460819,0.511459,0.586668,0.0588752,0.0703732,0.000141271,0.0590382,0.398372,0.286293,0.606558,0.036653,0.359128,0.0018021,0.683133,0.00129361,0.0463511,0.00642897,0.512763,0.369971,0.578349,0.181193,0.00386096,0.683088,0.131933,0.235444,0.48585,0.899283,0.548076,0.349116,0.005939,0.239545,0.432689,0.0204099,0.343881,0.0110284,0.606382,0.0167268,0.626346,0.316925,7.00483e-06,0.573659,0.211506,2.83778e-06,0.00016016,0.238465,0.0346954,0.128535,0.6873,0.508325,0.0178234,1.50224e-05,0.656755,0.54723,0.280307,0.393583,0.0228113,0.0596868,0.0984075,0.293026,0.408321,0.332526,0.605423,0.372182,0.429205,0.578951,0.365653,0.00213407,0.199377,0.35234,0.644643,0.0071728,0.291917,0.421082,0.25441,0.202782,0.672876,0.00663744,0.584705,0.00657735,0.00320407,0.926442,0.419676,6.67752e-05,0.189182,0.477589,0.46699,0.546448,0.00992491,0.058245,0.198207,8.69429e-11,0.178485,0.0615778,0.175552,0.129238,0.000776729,0.370995,0.360161,0.00265597,0.000154106,0.000151946,0.126311,0.606408,0.627185,0.360203,0.333725,3.67396e-05,0.0467176,0.153861,0.513045,0.0233876,0.565545,0.119811,0.0387162,1.06896e-06,0.754776,0.53531,0.0664979,0.002507,0.0236936,0.356381,6.11293e-05,0.194887,0.624689,0.206945,0.000544535,0.00378814,0.296994,0.244339,0.117049,0.0786167,0.0789416,0.376317,0.00278013,0.00420151,0.113459,0.576549,0.499072,0.744662,0.734628,0.00183829,0.0919254,0.0735469,0.000219546,0.102621,0.0760107,0.187642,0.286156,0.261868,0.541583,0.183047,0.247151,0.146385,0.365815,0.0576261,0.00153351,0.164977,0.175633,0.139918,0.34669,0.0828344,0.00422161,0.0238089,0.383126,0.354433,0.0294482,0.0614918,0.219485,0.149782,0.136923,9.40321e-06,0.113892,0.207214,1.92311e-05,0.0580534,0.00518407,0.161297,0.168389,0.270152,0.000225021,2.84456e-05,0.0660736,0.108971,0.0879235,0.0301295,0.145546,0.28124,0.417003,0.251882,0.172263,0.243319,0.0637178,0.257309,0.500692,0.166608,0.227224,0.030904,0.219023,0.115115,0.124916,0.0149794,0.28498,0.000512171,0.00100578,0.00641248,0.224626,0.183585,0.000326913,0.03989,4.48598e-05,0.05892,0.0691994,0.268299,0.198844,0.104946,0.000384118,0.207615,0.161213,0.118999,0.0737069,0.357807,0.621787,0.178782,0.019419,0.0866228,0.0408454,0.00477271,0.105411,0.0997542,0.209692,0.248936,0.0725263,0.102587,0.0742013,2.93934e-05,0.0457886,0.0514927,0.324236,0.220368,0.0367692,0.064656,0.226143,0.460406,0.0438521,0.435508,0.00470656,0.0522771,0.0787278,0.164404,0.159873,1.14821e-13,0.000557001,0.332403,0.0379537,0.6545,0.187953,0.051459,0.114868,0.0726892,0.18732,3.51069e-06,0.278397,0.0328172,0.170848,0.487259,0.302909,0.363016,0.100188,0.00222156,0.107653,0.235857,0.017951,0.191914,0.184022,0.216557,0.182956,0.116818,0.389792,0.36316,0.0625685,0.124464,0.544477,0.173134,0.101893,0.142875,0.167635,0.171311,0.20386,0.548036,9.98935e-07,1.41529e-05,8.65634e-07,3.46445e-08,0.0993937,1.17819e-10,2.6933e-06,0.0451012,0.0976639,0.0705088,0.833813,1.81892e-05,0.0430331,0.365775,0.155708,0.248017,0.22995,0.652972,0.0760151,0.0629459,0.486024,0.0803251,0.226641,0.379174,0.0939463,0.286748,0.0114526,1.81225e-05,0.014226,0.226359,0.960445,0.974549,0.000294622,0.279778,0.141699,0.0887743,0.142302,0.0653269,0.125712,0.264432,0.0994829,0.0604041,0.144185,0.0925862,0.289561,0.199201,2.75424e-07,0.172796,0.0595495,1.17122e-06,0.000625037,0.00776177,0.22302,1.27731e-08,0.284016,0.0754883,0.299492,0.100006,0.362866,0.00151424,0.0345492,0.279874,0.133127,0.016612,0.223717,0.426452,3.51473e-06,6.55922e-12,0.246601,0.193021,0.608002,0.202165,0.0946865,0.120618,0.079499,0.18762,7.86536e-05,1.3012e-05,0.201169,0.220353,0.24948,0.178639,0.291976,0.320355,0.364334,0.15547,0.00631475,0.415419,0.14794,0.147307,0.240761,0.225961,0.124417,0.335582,0.000654201,0.182843,0.130771,0.327768,0.135777,0.147842,0.0339286,0.217363,0.119015,0.00134589,0.21618,0.243266,0.107021,0.238657,0.20272,0.0896967,0.61565,0.0780061,0.315336,0.230477,0.279823,0.295555,0.502112,0.724669,0.0478217,0.507599,0.170854,0.0575231,0.174063,0.514243,0.459091,0.54832,0.502211,0.296013,0.0895871,0.00804872,0.0247432,0.0392766,0.00885937,0.25423,0.00505798,9.38009e-10,0.500698,0.472542,0.685908,0.747471,0.174869,0.818701,0.14198,0.224887,0.603763,0.00835925,0.0181844,0.938109,0.934991,0.290703,0.622694,0.0413786,0.00448166,0.360199,0.608176,0.00485804,0.253797,0.365494,0.212703,0.56318,0.364079,0.107716,0.0575699,0.104625,0.569409,0.328518,0.0458249,0.0541711,0.143396,0.483764,0.829658,0.784052,0.209437,0.55323,0.401218,0.232518,0.630688,0.464001,0.152018,0.579004,0.870272,0.839946,0.860705,0.261575,0.00354463,0.264245,0.379063,0.326516,0.522925,0.436016,0.00431716,0.202522,0.183837,0.507324,0.126097,0.00179436,0.00305636,0.0243103,0.294954,0.156999,0.35974,0.667777,0.014642,0.234254,0.357409,0.0543683,0.721266,0.00575146,0.252827,0.00199725,0.0563812,0.106633,0.0388817,0.00452282,0.62689,0.884725,0.274432,0.284496,0.000103689,0.00087777,0.563206,0.829402,0.684899,0.263302,0.192292,0.0174164,0.775168,0.216102,0.00340007,0.109605,0.397869,0.582542,0.226491,1.10804e-07,0.000469228,0.627953,0.156131,0.124057,0.639483,0.483658,0.452129,0.301581,0.261657,0.346776,0.466529,0.545655,0.438176,0.349112,0.741477,0.385425,4.13937e-05,0.128211,0.386339,0.382854,0.598787,0.478745,0.611661,0.000676019,5.22531e-06,0.00020531,0.608127,0.000387312,0.000452027,0.2536,0.246827,0.00166308,0.0362483,0.387134,0.559969,2.54564e-08,0.668972,0.0113028,0.00520796,0.346636,0.457747,0.00100333,0.476541,0.000281674,0.447581,0.0187686,0.254628,6.6811e-06,0.479347,1.6493e-06,0.632833,0.378333,0.152547,0.0384092,0.22798,0.102495,0.350933,0.263896,0.0446972,5.31173e-07,0.329284,0.242783,0.0947248,0.000852417,0.0239343,0.0331645,0.02408,0.00469795,0.00397584,0.118257,0.00817168,0.215123,0.000690216,0.133173,4.36958e-10,9.48066e-07,0.00871319,0.000163184,0.249415,0.000392363,0.285648,0.427316,0.391071,0.0433305,0.25563,0.240967,0.160955,0.000254771,0.0432189,0.122439,0.16188,0.23235,0.290415,0.353147,0.112422,0.170886,0.267687,0.000637917,0.284866,0.0887542,0.267811,0.000875654,0.147872,0.189388,0.00540153,0.210125,0.292967,0.218414,0.0509944,0.0871471,0.0689852,0.0602698,0.341188,0.259328,0.00289389,8.84489e-05,0.15696,0.129351,0.141936,0.0786166,0.000356235,0.205513,0.282389,0.251421,0.162089,0.330223,0.0016375,0.000167787,4.64635e-06,0.00774558,0.195748,0.27845,0.161712,0.237871,0.239139,0.095257,0.328852,0.332769,0.262022,0.274403,0.266687,0.184534,0.248707,0.31749,0.15156,0.287598,0.313858,0.223773,0.25788,0.181895,0.253768,0.30702,0.202977,0.00095279,0.327002,0.28543,0.222656,0.228479,0.127111,0.000269465,0.390754,0.0102294,0.279739,0.108118,0.259901,0.139723,0.0708274,0.0710478,0.00147648,0.102645,0.0539258,0.0709978,0.401939,0.332746,0.271338,0.242121,0.298673,0.244395,0.106889,0.128632,0.0845989,0.159153,0.0842401,0.000477314,0.0874421,0.100355,0.167854,0.142846,0.0583767,0.088258,0.117657,0.0486914,0.175784,0.262778,0.373453,0.362662,0.111581,0.184359,0.334474,0.0600054,0.000258223,0.0472356,0.376537,0.322827,0.000156623,0.359036,0.335984,0.171704,0.208256,0.265058,0.256405,0.362898,0.302133,0.40806,0.151361,0.000371318,0.00041492,0.150674,0.251128,0.246177,0.35674,0.35852,0.318525,2.15404e-07,0.287217,0.122782,0.00214888,0.0465068,0.00030277,0.125746,0.112897,0.0926658,0.222091,0.205977,0.34423,0.0936726,7.74979e-05,0.132374,2.68678e-05,0.0280766,9.41269e-05,0.00445319,0.321965,0.264707,0.450113
|tfbs_overrepresentation=0.191353,0.00307981,0.814139,0.0631091,0.257053,0.363996,0.00165206,0.510252,0.043387,0.0341265,0.181435,0.000427152,0.243414,0.164339,0.0199865,0.0034297,0.183412,0.128744,5.99111e-05,0.141416,1.11198e-05,0.172742,0.107781,0.124486,0.0550418,0.276459,0.268949,0.119094,0.0186717,0.122514,0.26347,0.149094,0.0239693,0.000305554,0.0877018,1.70479e-07,0.788552,0.0568767,0.157159,0.0879352,0.126525,0.0326801,0.182216,0.2375,0.157881,0.0480278,0.0503649,0.234372,0.145553,0.158244,0.19996,1.19472e-06,0.0924421,0.000333321,0.255843,0.0508907,0.140644,0.273035,5.3427e-06,0.138225,0.0390464,0.194086,0.000535323,0.0999599,0.0720888,5.21665e-05,0.439574,0.0792005,0.113084,0.216289,0.00050917,0.0892037,0.116917,0.155921,0.00995563,0.0227583,0.126543,0.0578308,0.0493551,0.00965832,0.125428,0.290468,0.0562614,0.150119,0.368178,0.320801,0.0848546,0.268505,0.713984,0.0827752,0.112676,0.0655645,0.12511,0.0626609,0.112199,0.150351,0.327332,0.199405,0.121709,0.347653,0.0759036,0.0700593,0.184542,0.0491142,0.0437659,0.0541957,0.0883058,0.0184799,0.187509,0.34189,0.23573,0.0450707,0.194256,0.0235108,0.132631,0.0447483,0.0270258,0.0748174,0.180926,0.110194,0.215858,0.000347773,0.182323,0.112709,0.134107,0.228632,0.119051,0.0196757,0.110868,0.175735,0.078637,0.0985137,0.0755515,0.0302655,0.0142686,0.141472,0.085537,0.0730922,0.0438087,0.0052702,0.0302521,0.166414,0.262198,0.202388,0.0346699,0.0913381,0.129544,0.110696,0.0515825,0.157774,0.258146,0.186826,0.233377,0.0352845,0.0565357,0.153577,0.0984158,0.29227,9.88091e-07,0.0447121,0.291455,0.0081576,0.152417,0.192028,0.000978216,0.149398,0.0530169,0.166112,2.64977e-05,0.000170227,0.2321,0.179282,0.564569,0.0715212,0.105131,0.118265,7.8504e-08,0.234755,0.230552,0.0472274,0.205973,0.159869,0.0363736,0.0120302,0.0970713,0.155237,0.0304129,0.0532055,0.108938,0.224443,0.140245,0.241581,0.160458,0.292792,0.147332,0.0622664,0.102951,0.0795624,0.0891668,2.11932e-05,0.117261,0.0797088,0.0408965,0.0799774,0.00107795,0.0616625,0.346995,0.197158,0.0387454,0.0288641,0.0606832,0.136664,0.158184,0.147626,0.0143681,0.218801,0.00190756,0.132273,0.000101987,0.134907,0.00121673,4.12454e-06,0.202467,0.208718,0.00488969,0.165147,0.180711,7.81501e-06,0.0797807,0.0790532,0.0275851,0.476758,0.0553945,0.000183963,0.125804,0.00780206,0.0624687,0.0634515,0.00188251,0.275612,0.235571,0.435782,0.128998,0.109226,0.151958,0.178155,0.00596033,0.146021,0.0253438,0.15291,0.0229006,0.238926,0.239646,0.128521,0.1286,0.0230819,0.14037,0.0370757,0.0916845,3.82222e-06,0.0816983,0.226367,0.211672,1.15213e-09,0.0457509,0.106603,0.00590953,0.12083,0.154253,0.0993998,0.00105579,0.0834863,0.324356,0.18736,0.113754,0.0504034,0.169684,0.000218453,0.0880794,0.149583,0.153844,0.000985425,0.20358,0.376043,0.00238365,0.381628,0.332539,0.186966,0.0255379,0.389374,0.000346582,0.414547,0.489273,0.413223,0.639461,0.720642,0.0678774,0.369161,0.500422,0.49089,0.687176,0.123196,0.241524,0.00337546,0.234628,0.168228,0.143893,0.41477,2.42457e-05,0.170724,0.00400444,0.201843,0.751064,0.632838,0.624969,0.460819,0.511459,0.586668,0.0588752,0.0703732,0.000141271,0.0590382,0.398372,0.286293,0.606558,0.036653,0.359128,0.0018021,0.683133,0.00129361,0.0463511,0.00642897,0.512763,0.369971,0.578349,0.181193,0.00386096,0.683088,0.131933,0.235444,0.48585,0.899283,0.548076,0.349116,0.005939,0.239545,0.432689,0.0204099,0.343881,0.0110284,0.606382,0.0167268,0.626346,0.316925,7.00483e-06,0.573659,0.211506,2.83778e-06,0.00016016,0.238465,0.0346954,0.128535,0.6873,0.508325,0.0178234,1.50224e-05,0.656755,0.54723,0.280307,0.393583,0.0228113,0.0596868,0.0984075,0.293026,0.408321,0.332526,0.605423,0.372182,0.429205,0.578951,0.365653,0.00213407,0.199377,0.35234,0.644643,0.0071728,0.291917,0.421082,0.25441,0.202782,0.672876,0.00663744,0.584705,0.00657735,0.00320407,0.926442,0.419676,6.67752e-05,0.189182,0.477589,0.46699,0.546448,0.00992491,0.058245,0.198207,8.69429e-11,0.178485,0.0615778,0.175552,0.129238,0.000776729,0.370995,0.360161,0.00265597,0.000154106,0.000151946,0.126311,0.606408,0.627185,0.360203,0.333725,3.67396e-05,0.0467176,0.153861,0.513045,0.0233876,0.565545,0.119811,0.0387162,1.06896e-06,0.754776,0.53531,0.0664979,0.002507,0.0236936,0.356381,6.11293e-05,0.194887,0.624689,0.206945,0.000544535,0.00378814,0.296994,0.244339,0.117049,0.0786167,0.0789416,0.376317,0.00278013,0.00420151,0.113459,0.576549,0.499072,0.744662,0.734628,0.00183829,0.0919254,0.0735469,0.000219546,0.102621,0.0760107,0.187642,0.286156,0.261868,0.541583,0.183047,0.247151,0.146385,0.365815,0.0576261,0.00153351,0.164977,0.175633,0.139918,0.34669,0.0828344,0.00422161,0.0238089,0.383126,0.354433,0.0294482,0.0614918,0.219485,0.149782,0.136923,9.40321e-06,0.113892,0.207214,1.92311e-05,0.0580534,0.00518407,0.161297,0.168389,0.270152,0.000225021,2.84456e-05,0.0660736,0.108971,0.0879235,0.0301295,0.145546,0.28124,0.417003,0.251882,0.172263,0.243319,0.0637178,0.257309,0.500692,0.166608,0.227224,0.030904,0.219023,0.115115,0.124916,0.0149794,0.28498,0.000512171,0.00100578,0.00641248,0.224626,0.183585,0.000326913,0.03989,4.48598e-05,0.05892,0.0691994,0.268299,0.198844,0.104946,0.000384118,0.207615,0.161213,0.118999,0.0737069,0.357807,0.621787,0.178782,0.019419,0.0866228,0.0408454,0.00477271,0.105411,0.0997542,0.209692,0.248936,0.0725263,0.102587,0.0742013,2.93934e-05,0.0457886,0.0514927,0.324236,0.220368,0.0367692,0.064656,0.226143,0.460406,0.0438521,0.435508,0.00470656,0.0522771,0.0787278,0.164404,0.159873,1.14821e-13,0.000557001,0.332403,0.0379537,0.6545,0.187953,0.051459,0.114868,0.0726892,0.18732,3.51069e-06,0.278397,0.0328172,0.170848,0.487259,0.302909,0.363016,0.100188,0.00222156,0.107653,0.235857,0.017951,0.191914,0.184022,0.216557,0.182956,0.116818,0.389792,0.36316,0.0625685,0.124464,0.544477,0.173134,0.101893,0.142875,0.167635,0.171311,0.20386,0.548036,9.98935e-07,1.41529e-05,8.65634e-07,3.46445e-08,0.0993937,1.17819e-10,2.6933e-06,0.0451012,0.0976639,0.0705088,0.833813,1.81892e-05,0.0430331,0.365775,0.155708,0.248017,0.22995,0.652972,0.0760151,0.0629459,0.486024,0.0803251,0.226641,0.379174,0.0939463,0.286748,0.0114526,1.81225e-05,0.014226,0.226359,0.960445,0.974549,0.000294622,0.279778,0.141699,0.0887743,0.142302,0.0653269,0.125712,0.264432,0.0994829,0.0604041,0.144185,0.0925862,0.289561,0.199201,2.75424e-07,0.172796,0.0595495,1.17122e-06,0.000625037,0.00776177,0.22302,1.27731e-08,0.284016,0.0754883,0.299492,0.100006,0.362866,0.00151424,0.0345492,0.279874,0.133127,0.016612,0.223717,0.426452,3.51473e-06,6.55922e-12,0.246601,0.193021,0.608002,0.202165,0.0946865,0.120618,0.079499,0.18762,7.86536e-05,1.3012e-05,0.201169,0.220353,0.24948,0.178639,0.291976,0.320355,0.364334,0.15547,0.00631475,0.415419,0.14794,0.147307,0.240761,0.225961,0.124417,0.335582,0.000654201,0.182843,0.130771,0.327768,0.135777,0.147842,0.0339286,0.217363,0.119015,0.00134589,0.21618,0.243266,0.107021,0.238657,0.20272,0.0896967,0.61565,0.0780061,0.315336,0.230477,0.279823,0.295555,0.502112,0.724669,0.0478217,0.507599,0.170854,0.0575231,0.174063,0.514243,0.459091,0.54832,0.502211,0.296013,0.0895871,0.00804872,0.0247432,0.0392766,0.00885937,0.25423,0.00505798,9.38009e-10,0.500698,0.472542,0.685908,0.747471,0.174869,0.818701,0.14198,0.224887,0.603763,0.00835925,0.0181844,0.938109,0.934991,0.290703,0.622694,0.0413786,0.00448166,0.360199,0.608176,0.00485804,0.253797,0.365494,0.212703,0.56318,0.364079,0.107716,0.0575699,0.104625,0.569409,0.328518,0.0458249,0.0541711,0.143396,0.483764,0.829658,0.784052,0.209437,0.55323,0.401218,0.232518,0.630688,0.464001,0.152018,0.579004,0.870272,0.839946,0.860705,0.261575,0.00354463,0.264245,0.379063,0.326516,0.522925,0.436016,0.00431716,0.202522,0.183837,0.507324,0.126097,0.00179436,0.00305636,0.0243103,0.294954,0.156999,0.35974,0.667777,0.014642,0.234254,0.357409,0.0543683,0.721266,0.00575146,0.252827,0.00199725,0.0563812,0.106633,0.0388817,0.00452282,0.62689,0.884725,0.274432,0.284496,0.000103689,0.00087777,0.563206,0.829402,0.684899,0.263302,0.192292,0.0174164,0.775168,0.216102,0.00340007,0.109605,0.397869,0.582542,0.226491,1.10804e-07,0.000469228,0.627953,0.156131,0.124057,0.639483,0.483658,0.452129,0.301581,0.261657,0.346776,0.466529,0.545655,0.438176,0.349112,0.741477,0.385425,4.13937e-05,0.128211,0.386339,0.382854,0.598787,0.478745,0.611661,0.000676019,5.22531e-06,0.00020531,0.608127,0.000387312,0.000452027,0.2536,0.246827,0.00166308,0.0362483,0.387134,0.559969,2.54564e-08,0.668972,0.0113028,0.00520796,0.346636,0.457747,0.00100333,0.476541,0.000281674,0.447581,0.0187686,0.254628,6.6811e-06,0.479347,1.6493e-06,0.632833,0.378333,0.152547,0.0384092,0.22798,0.102495,0.350933,0.263896,0.0446972,5.31173e-07,0.329284,0.242783,0.0947248,0.000852417,0.0239343,0.0331645,0.02408,0.00469795,0.00397584,0.118257,0.00817168,0.215123,0.000690216,0.133173,4.36958e-10,9.48066e-07,0.00871319,0.000163184,0.249415,0.000392363,0.285648,0.427316,0.391071,0.0433305,0.25563,0.240967,0.160955,0.000254771,0.0432189,0.122439,0.16188,0.23235,0.290415,0.353147,0.112422,0.170886,0.267687,0.000637917,0.284866,0.0887542,0.267811,0.000875654,0.147872,0.189388,0.00540153,0.210125,0.292967,0.218414,0.0509944,0.0871471,0.0689852,0.0602698,0.341188,0.259328,0.00289389,8.84489e-05,0.15696,0.129351,0.141936,0.0786166,0.000356235,0.205513,0.282389,0.251421,0.162089,0.330223,0.0016375,0.000167787,4.64635e-06,0.00774558,0.195748,0.27845,0.161712,0.237871,0.239139,0.095257,0.328852,0.332769,0.262022,0.274403,0.266687,0.184534,0.248707,0.31749,0.15156,0.287598,0.313858,0.223773,0.25788,0.181895,0.253768,0.30702,0.202977,0.00095279,0.327002,0.28543,0.222656,0.228479,0.127111,0.000269465,0.390754,0.0102294,0.279739,0.108118,0.259901,0.139723,0.0708274,0.0710478,0.00147648,0.102645,0.0539258,0.0709978,0.401939,0.332746,0.271338,0.242121,0.298673,0.244395,0.106889,0.128632,0.0845989,0.159153,0.0842401,0.000477314,0.0874421,0.100355,0.167854,0.142846,0.0583767,0.088258,0.117657,0.0486914,0.175784,0.262778,0.373453,0.362662,0.111581,0.184359,0.334474,0.0600054,0.000258223,0.0472356,0.376537,0.322827,0.000156623,0.359036,0.335984,0.171704,0.208256,0.265058,0.256405,0.362898,0.302133,0.40806,0.151361,0.000371318,0.00041492,0.150674,0.251128,0.246177,0.35674,0.35852,0.318525,2.15404e-07,0.287217,0.122782,0.00214888,0.0465068,0.00030277,0.125746,0.112897,0.0926658,0.222091,0.205977,0.34423,0.0936726,7.74979e-05,0.132374,2.68678e-05,0.0280766,9.41269e-05,0.00445319,0.321965,0.264707,0.450113
|tfbs_overrepresentation_for_novel_motifs=0.590005,1.03954,0.581696,0.741427,2.27411,1.75218,0.821651,1.02453,0.392841,0.151681,0.706765,0.867962,0.341754,0.809319,0.532789,0.559384,1.05593,0.471262,0.356737,0.223552,0.581762,0.169357,0.731221,0.528529,0.632849,0.892087,0.316693,0.728867,0.537869,0.297585,0.682839,1.09415,0.433165,0.344471,0.49475,0.0842336,0.491074,0.740899,0.463978,0.371755,0.493145,0.66492,0.183156,0.53106,0.0946706,0.61613,0.822818,0.694903,3.80116,0.538016,0.90714,0.83543,0.25073,1.17354,1.33024,0.812467,1.34056,0.777235,0.806003,0.776148,1.13655,0.825354,1.0193,1.02706,0.844545,0.991076,1.42026,1.79268,1.08337,1.62905,0.650393,1.83352,0.248021,1.32819,0.336329,0.321165,1.49254,1.00941,1.08,1.51572,0.362435,1.02594,0.844168,0.399165,1.27559,0.109222,0.6318,0.291738,0.934646,1.89266,1.51507,1.24792,1.11156,0.441618,0.535192,2.9966,0.354969,1.15558,0.939507,1.37313,0.465545,1.1057,1.14983,1.05974,0.979006,0.701817,1.04326,0.805616,0.632569,0.516141,1.44917,1.14697,0.575476,0.717043,1.46636,0.489254,0.12452,0.681522,0.988625,1.97727,1.31973,0.932085,0.736652,0.856196,1.57854,1.0102,0.814847,1.11673,1.36323,0.458105,1.24863,0.68598,1.37788,0.852645,1.52813,2.16698,1.62065,0.729481,1.48509,2.34913,1.94535,1.44718,0.8167,1.15194,0.980848,0.768101,0.963351,2.1895,1.58937,0.437774,0.234974,0.175846,1.24902,0.383416,0.824835,1.65997,0.917558,0.518428,0.632914,0.600782,1.44595,1.23002,1.07918,0.604379,0.997702,0.843324,0.423521,0.820225,0.0401987
|tfbs_overrepresentation_for_novel_motifs=0.590005,1.03954,0.581696,0.741427,2.27411,1.75218,0.821651,1.02453,0.392841,0.151681,0.706765,0.867962,0.341754,0.809319,0.532789,0.559384,1.05593,0.471262,0.356737,0.223552,0.581762,0.169357,0.731221,0.528529,0.632849,0.892087,0.316693,0.728867,0.537869,0.297585,0.682839,1.09415,0.433165,0.344471,0.49475,0.0842336,0.491074,0.740899,0.463978,0.371755,0.493145,0.66492,0.183156,0.53106,0.0946706,0.61613,0.822818,0.694903,3.80116,0.538016,0.90714,0.83543,0.25073,1.17354,1.33024,0.812467,1.34056,0.777235,0.806003,0.776148,1.13655,0.825354,1.0193,1.02706,0.844545,0.991076,1.42026,1.79268,1.08337,1.62905,0.650393,1.83352,0.248021,1.32819,0.336329,0.321165,1.49254,1.00941,1.08,1.51572,0.362435,1.02594,0.844168,0.399165,1.27559,0.109222,0.6318,0.291738,0.934646,1.89266,1.51507,1.24792,1.11156,0.441618,0.535192,2.9966,0.354969,1.15558,0.939507,1.37313,0.465545,1.1057,1.14983,1.05974,0.979006,0.701817,1.04326,0.805616,0.632569,0.516141,1.44917,1.14697,0.575476,0.717043,1.46636,0.489254,0.12452,0.681522,0.988625,1.97727,1.31973,0.932085,0.736652,0.856196,1.57854,1.0102,0.814847,1.11673,1.36323,0.458105,1.24863,0.68598,1.37788,0.852645,1.52813,2.16698,1.62065,0.729481,1.48509,2.34913,1.94535,1.44718,0.8167,1.15194,0.980848,0.768101,0.963351,2.1895,1.58937,0.437774,0.234974,0.175846,1.24902,0.383416,0.824835,1.65997,0.917558,0.518428,0.632914,0.600782,1.44595,1.23002,1.07918,0.604379,0.997702,0.843324,0.423521,0.820225,0.0401987
|tfbs_overrepresentation_jaspar=MA0003.1;0.0214529,MA0004.1;0.71247,MA0006.1;0.532262,MA0007.1;0.6918,MA0009.1;1.20602,MA0014.1;0.0695829,MA0017.1;0.577281,MA0019.1;0.873355,MA0024.1;1.09684,MA0025.1;1.34373,MA0027.1;2.83281,MA0028.1;0.550763,MA0029.1;1.11704,MA0030.1;1.10506,MA0031.1;1.03735,MA0038.1;0.824639,MA0040.1;1.12314,MA0041.1;0.732902,MA0042.1;0.697662,MA0043.1;1.20635,MA0046.1;1.19471,MA0048.1;0.25531,MA0050.1;0.69864,MA0051.1;0.820063,MA0052.1;1.12718,MA0055.1;0.125954,MA0056.1;0,MA0057.1;0.248209,MA0058.1;0.605914,MA0059.1;0.604454,MA0060.1;0.393285,MA0061.1;0.360128,MA0063.1;0,MA0066.1;0.825101,MA0067.1;1.53181,MA0068.1;0.313194,MA0069.1;1.19071,MA0070.1;1.17908,MA0071.1;0.782546,MA0072.1;1.1744,MA0073.1;0.0343867,MA0074.1;0.819248,MA0076.1;0.623864,MA0077.1;1.16637,MA0078.1;0.926725,MA0081.1;0.604638,MA0083.1;1.21381,MA0084.1;1.72172,MA0087.1;1.17185,MA0088.1;0.182167,MA0089.1;0,MA0090.1;0.640115,MA0091.1;0.715356,MA0092.1;0.673508,MA0093.1;0.535768,MA0095.1;0,MA0098.1;0,MA0100.1;0.83965,MA0101.1;0.539569,MA0103.1;0.521546,MA0105.1;0.232357,MA0106.1;0.869173,MA0107.1;0.453492,MA0108.2;1.03412,MA0109.1;0,MA0111.1;0.655276,MA0113.1;0.886811,MA0114.1;0.447443,MA0115.1;1.45393,MA0116.1;0.457606,MA0117.1;1.24497,MA0119.1;0.586221,MA0122.1;1.27173,MA0124.1;1.41151,MA0125.1;1.32534,MA0130.1;0,MA0131.1;0.94608,MA0132.1;0,MA0133.1;0,MA0135.1;1.23748,MA0136.1;1.94315,MA0139.1;0.344952,MA0140.1;0.779643,MA0141.1;0.602484,MA0142.1;1.00381,MA0143.1;0.887001,MA0144.1;0.430413,MA0145.1;0.195821,MA0146.1;0.061409,MA0147.1;0.46175,MA0148.1;4.23774,MA0149.1;0.769072,MA0062.2;1.66396,MA0035.2;0.778873,MA0039.2;0.0247757,MA0138.2;0.928035,MA0002.2;0.379056,MA0137.2;0.558189,MA0104.2;0.392359,MA0047.2;0.856092,MA0112.2;0.187982,MA0065.2;0.199162,MA0150.1;0.633493,MA0151.1;0,MA0152.1;0.78681,MA0153.1;1.30799,MA0154.1;2.64806,MA0155.1;0.180766,MA0156.1;2.36058,MA0157.1;0.97481,MA0158.1;0,MA0159.1;0.462502,MA0160.1;0.756582,MA0161.1;0,MA0162.1;0.0928415,MA0163.1;0.0725493,MA0164.1;0.90014,MA0080.2;2.27911,MA0018.2;4.78886,MA0099.2;0.7872,MA0079.2;0.000248021,MA0102.2;1.75932,MA0258.1;0.418966,MA0259.1;0.471671,MA0442.1;0
}}
}}

Revision as of 20:24, 22 January 2013


Full id: C2094_Fibroblast_Mesenchymal_neuroectodermal_Hep2_smooth_Smooth_left



Phase1 CAGE Peaks

Hg19::chr11:111685355..111685370,-p5@ALG9
Hg19::chr11:111685389..111685410,-p7@ALG9
Hg19::chr11:111685420..111685437,-p6@ALG9
Hg19::chr11:111685458..111685469,-p9@ALG9


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
adult organism2.83e-42114
neural tube1.05e-2956
neural rod1.05e-2956
future spinal cord1.05e-2956
neural keel1.05e-2956
regional part of nervous system2.41e-2853
regional part of brain2.41e-2853
brain1.40e-2768
future brain1.40e-2768
neurectoderm3.51e-2786
central nervous system3.44e-2681
neural plate3.60e-2682
presumptive neural plate3.60e-2682
regional part of forebrain5.25e-2641
forebrain5.25e-2641
anterior neural tube5.25e-2641
future forebrain5.25e-2641
organ system subdivision1.55e-24223
nervous system3.26e-2389
multi-tissue structure5.94e-23342
brain grey matter7.86e-2234
gray matter7.86e-2234
telencephalon4.55e-2134
pre-chordal neural plate6.45e-2161
ecto-epithelium2.61e-20104
anatomical cluster3.42e-20373
regional part of telencephalon8.29e-2032
cerebral hemisphere1.56e-1932
structure with developmental contribution from neural crest3.20e-19132
ectoderm-derived structure2.42e-18171
ectoderm2.42e-18171
presumptive ectoderm2.42e-18171
regional part of cerebral cortex1.33e-1722
neocortex1.40e-1520
cerebral cortex8.33e-1525
pallium8.33e-1525
larynx2.07e-139
organ part9.83e-12218
tube1.29e-10192
anatomical conduit1.30e-10240
organ6.45e-10503
cell layer8.64e-10309
embryonic structure9.31e-09564
epithelium9.56e-09306
neural nucleus1.10e-089
nucleus of brain1.10e-089
germ layer1.11e-08560
germ layer / neural crest1.11e-08560
embryonic tissue1.11e-08560
presumptive structure1.11e-08560
germ layer / neural crest derived structure1.11e-08560
epiblast (generic)1.11e-08560
vasculature of organ1.19e-0811
basal ganglion1.48e-089
nuclear complex of neuraxis1.48e-089
aggregate regional part of brain1.48e-089
collection of basal ganglia1.48e-089
cerebral subcortex1.48e-089
developing anatomical structure3.69e-08581
brain vasculature1.05e-075
embryo1.05e-07592
gyrus1.57e-076
multi-cellular organism1.76e-07656
brainstem2.76e-076


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.10.0214529
MA0004.10.71247
MA0006.10.532262
MA0007.10.6918
MA0009.11.20602
MA0014.10.0695829
MA0017.10.577281
MA0019.10.873355
MA0024.11.09684
MA0025.11.34373
MA0027.12.83281
MA0028.10.550763
MA0029.11.11704
MA0030.11.10506
MA0031.11.03735
MA0038.10.824639
MA0040.11.12314
MA0041.10.732902
MA0042.10.697662
MA0043.11.20635
MA0046.11.19471
MA0048.10.25531
MA0050.10.69864
MA0051.10.820063
MA0052.11.12718
MA0055.10.125954
MA0056.10
MA0057.10.248209
MA0058.10.605914
MA0059.10.604454
MA0060.10.393285
MA0061.10.360128
MA0063.10
MA0066.10.825101
MA0067.11.53181
MA0068.10.313194
MA0069.11.19071
MA0070.11.17908
MA0071.10.782546
MA0072.11.1744
MA0073.10.0343867
MA0074.10.819248
MA0076.10.623864
MA0077.11.16637
MA0078.10.926725
MA0081.10.604638
MA0083.11.21381
MA0084.11.72172
MA0087.11.17185
MA0088.10.182167
MA0089.10
MA0090.10.640115
MA0091.10.715356
MA0092.10.673508
MA0093.10.535768
MA0095.10
MA0098.10
MA0100.10.83965
MA0101.10.539569
MA0103.10.521546
MA0105.10.232357
MA0106.10.869173
MA0107.10.453492
MA0108.21.03412
MA0109.10
MA0111.10.655276
MA0113.10.886811
MA0114.10.447443
MA0115.11.45393
MA0116.10.457606
MA0117.11.24497
MA0119.10.586221
MA0122.11.27173
MA0124.11.41151
MA0125.11.32534
MA0130.10
MA0131.10.94608
MA0132.10
MA0133.10
MA0135.11.23748
MA0136.11.94315
MA0139.10.344952
MA0140.10.779643
MA0141.10.602484
MA0142.11.00381
MA0143.10.887001
MA0144.10.430413
MA0145.10.195821
MA0146.10.061409
MA0147.10.46175
MA0148.14.23774
MA0149.10.769072
MA0062.21.66396
MA0035.20.778873
MA0039.20.0247757
MA0138.20.928035
MA0002.20.379056
MA0137.20.558189
MA0104.20.392359
MA0047.20.856092
MA0112.20.187982
MA0065.20.199162
MA0150.10.633493
MA0151.10
MA0152.10.78681
MA0153.11.30799
MA0154.12.64806
MA0155.10.180766
MA0156.12.36058
MA0157.10.97481
MA0158.10
MA0159.10.462502
MA0160.10.756582
MA0161.10
MA0162.10.0928415
MA0163.10.0725493
MA0164.10.90014
MA0080.22.27911
MA0018.24.78886
MA0099.20.7872
MA0079.20.000248021
MA0102.21.75932
MA0258.10.418966
MA0259.10.471671
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
GATA1#2623413.56030814380042.95627390049268e-050.000613086358009441



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

This analysis result is provided for C0 - C305 clusters.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=Coexpression_cluster:C2094&oldid=2570605"