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MCL coexpression mm9:2675: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0009569!1.31e-13!66;UBERON:0001041!1.05e-12!80;UBERON:0004119!1.21e-12!118;UBERON:0000925!1.21e-12!118;UBERON:0006595!1.21e-12!118;UBERON:0004921!6.30e-12!114;UBERON:0001007!2.05e-11!116;UBERON:0001555!2.05e-11!116;UBERON:0007026!2.05e-11!116;UBERON:0002365!5.80e-11!25;UBERON:0002330!5.80e-11!25;UBERON:0005177!8.24e-11!79;UBERON:0002107!2.78e-10!22;UBERON:0007499!2.78e-10!22;UBERON:0006925!2.78e-10!22;UBERON:0009497!2.78e-10!22;UBERON:0000015!2.78e-10!22;UBERON:0002423!2.78e-10!22;UBERON:0006235!2.78e-10!22;UBERON:0008835!2.78e-10!22;UBERON:0003894!2.78e-10!22;UBERON:0004161!2.78e-10!22;UBERON:0008836!2.78e-10!22;UBERON:0005172!5.24e-10!49;UBERON:0005173!5.24e-10!49;UBERON:0002417!5.24e-10!49;UBERON:0000916!5.24e-10!49;UBERON:0009854!1.43e-09!23;UBERON:0009856!1.43e-09!23;UBERON:0002100!1.74e-08!90;UBERON:0005911!1.96e-08!69;UBERON:0003914!2.85e-08!47;UBERON:0001048!4.13e-08!134;UBERON:0000466!1.41e-07!79;UBERON:0005256!2.66e-07!45;UBERON:0000475!6.11e-07!150
|ontology_enrichment_uberon=UBERON:0009569!1.31e-13!66;UBERON:0001041!1.05e-12!80;UBERON:0004119!1.21e-12!118;UBERON:0000925!1.21e-12!118;UBERON:0006595!1.21e-12!118;UBERON:0004921!6.30e-12!114;UBERON:0001007!2.05e-11!116;UBERON:0001555!2.05e-11!116;UBERON:0007026!2.05e-11!116;UBERON:0002365!5.80e-11!25;UBERON:0002330!5.80e-11!25;UBERON:0005177!8.24e-11!79;UBERON:0002107!2.78e-10!22;UBERON:0007499!2.78e-10!22;UBERON:0006925!2.78e-10!22;UBERON:0009497!2.78e-10!22;UBERON:0000015!2.78e-10!22;UBERON:0002423!2.78e-10!22;UBERON:0006235!2.78e-10!22;UBERON:0008835!2.78e-10!22;UBERON:0003894!2.78e-10!22;UBERON:0004161!2.78e-10!22;UBERON:0008836!2.78e-10!22;UBERON:0005172!5.24e-10!49;UBERON:0005173!5.24e-10!49;UBERON:0002417!5.24e-10!49;UBERON:0000916!5.24e-10!49;UBERON:0009854!1.43e-09!23;UBERON:0009856!1.43e-09!23;UBERON:0002100!1.74e-08!90;UBERON:0005911!1.96e-08!69;UBERON:0003914!2.85e-08!47;UBERON:0001048!4.13e-08!134;UBERON:0000466!1.41e-07!79;UBERON:0005256!2.66e-07!45;UBERON:0000475!6.11e-07!150
|tfbs_overrepresentation_for_novel_motifs=0.752782,0.193418,0.722405,0.801166,0.587814,0.81763,0.919454,0.467321,0.479531,0.235304,0.870507,0.906098,0.467629,0.933025,1.47843,0,1.14208,0.578045,0.448066,0.328717,0.679146,0.275782,0.932027,0.585919,0.731217,0.963352,0.437236,0.841386,0.64294,0.380786,0.825437,1.24901,0.575271,0.411696,0.608816,0.444545,0.563758,0.902078,0.536514,0.50014,0.582863,0.831295,0.261619,0.610669,0.474221,0.788421,1.05665,0.859154,0.235354,0.646474,1.12346,0.99279,0.371606,1.3966,1.41464,0.940919,0.657156,0.891887,0.425455,0.938668,1.22795,1.00308,0.494668,1.11142,0.953187,1.15459,1.55483,1.90983,1.22303,1.7608,0.700291,0.474956,0.284975,1.44925,0.416814,0.402065,0.411601,1.04436,1.20986,0.684144,0.476502,1.16055,1.00151,0.459035,1.32978,0.181575,1.07971,0.380977,1.06194,2.07346,1.62608,1.33496,1.26245,0.595071,0.531443,0.509215,0.464141,1.26539,1.05692,0.352122,0.563856,1.24872,1.37854,1.12409,1.12297,0.830796,1.18646,0.854628,0.689894,0.681267,0.744607,1.38039,0.685481,0.876299,1.63327,0.580657,0.212464,0.805461,1.14346,0.559153,1.45481,1.08896,0.965352,1.04338,1.68841,1.21376,0.928483,1.25534,1.55328,0.598722,1.36093,0.792832,1.52297,0.955954,1.65529,0.273451,0.762499,0.832891,1.60513,2.44352,2.04137,1.55966,0.978551,1.26,1.11604,0.831808,1.06002,2.40374,0.765221,0.589976,0.38417,0.260379,1.39822,0.516739,0.954936,1.48249,0.993889,0.622823,0.749933,0.762177,1.61484,1.32889,1.21423,0.741984,1.11251,0.94678,1.38188,0.904334,0.135528
}}
}}

Revision as of 21:47, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:49465276..49465280,+p@chr11:49465276..49465280
+
Mm9::chr14:8799922..8799933,-p@chr14:8799922..8799933
-
Mm9::chr18:60543102..60543105,+p@chr18:60543102..60543105
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
subdivision of trunk1.31e-1366
foregut1.05e-1280
endoderm-derived structure1.21e-12118
endoderm1.21e-12118
presumptive endoderm1.21e-12118
subdivision of digestive tract6.30e-12114
digestive system2.05e-11116
digestive tract2.05e-11116
primitive gut2.05e-11116
exocrine gland5.80e-1125
exocrine system5.80e-1125
trunk region element8.24e-1179
liver2.78e-1022
epithelial sac2.78e-1022
digestive gland2.78e-1022
epithelium of foregut-midgut junction2.78e-1022
anatomical boundary2.78e-1022
hepatobiliary system2.78e-1022
foregut-midgut junction2.78e-1022
hepatic diverticulum2.78e-1022
liver primordium2.78e-1022
septum transversum2.78e-1022
liver bud2.78e-1022
abdomen element5.24e-1049
abdominal segment element5.24e-1049
abdominal segment of trunk5.24e-1049
abdomen5.24e-1049
digestive tract diverticulum1.43e-0923
sac1.43e-0923
trunk1.74e-0890
endo-epithelium1.96e-0869
epithelial tube2.85e-0847
primordium4.13e-08134
immaterial anatomical entity1.41e-0779
trunk mesenchyme2.66e-0745
organism subdivision6.11e-07150


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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