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MCL coexpression mm9:173: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002113!2.18e-22!14;UBERON:0003918!2.18e-22!14;UBERON:0011143!2.18e-22!14;UBERON:0005095!2.18e-22!14;UBERON:0007687!2.18e-22!14;UBERON:0006554!7.29e-17!18;UBERON:0001008!7.59e-16!19;UBERON:0000489!4.20e-14!21
|ontology_enrichment_uberon=UBERON:0002113!2.18e-22!14;UBERON:0003918!2.18e-22!14;UBERON:0011143!2.18e-22!14;UBERON:0005095!2.18e-22!14;UBERON:0007687!2.18e-22!14;UBERON:0006554!7.29e-17!18;UBERON:0001008!7.59e-16!19;UBERON:0000489!4.20e-14!21
|tfbs_overrepresentation_for_novel_motifs=0.244077,1.0564,0.20042,0.322992,0.551837,0.882841,0.129441,0.0660164,0.864552,0.146126,1.08087,0.844687,0.604135,0.139319,0.62811,0,0.339509,0.0571397,0.369859,0.612439,0.925879,0.40397,0.138579,0.544986,0.377843,1.46194,1.79101,0.0805072,0.35387,0.108756,0.0721666,0.472387,0.341188,0.253009,0.630383,0.215663,0.311861,0.521973,0.0778574,0.175004,0.225486,0.193797,0.971611,0.873411,0.0688642,0.780217,0.902931,0.703929,0.568687,0.362356,0.0961001,0.187558,1.3581,0.243357,0.25518,0.145251,0.233729,0.110621,0.416818,0.143545,0.44482,0.0531464,0.165266,0.631946,0.355731,0.109539,1.66588,0.646267,0.438473,1.2876,0.313358,0.0139323,0.00736362,1.39544,1.31854,0.327668,0.166121,0.506786,0.421662,1.25689,0.0358212,0.361149,0.432862,0.563312,0.583779,0.0503736,1.61861,1.2205,0.538507,0.79385,0.408631,0.204735,0.163079,0.249098,0.236942,0.302655,0.297907,0.956452,0.07057,0.255367,0.312105,0.919148,0.654997,0.65681,0.0958958,0.0162974,0.124252,0.0878574,0.293048,0.148771,0.914944,0.232932,0.28464,0.466987,0.414266,1.5586,0.171521,0.165964,0.104628,0.860146,0.282295,0.280605,1.47057,1.30855,0.458262,0.137605,0.915283,0.159232,0.352977,0.592041,0.628947,0.308597,1.58312,0.645289,0.431675,0.0220423,0.449062,0.380729,0.392345,1.14356,0.764457,0.357745,0.395364,2.15822,0.0930391,0.0754316,0.535003,1.10524,1.00064,0.775654,0.266966,0.00128726,0.244412,0.471435,0.642858,0.815343,0.188516,0.17926,0.114214,0.124672,0.399868,0.201084,0.42721,0.904257,0.634074,1.39112,0.463194,0.839216,1.0707
}}
}}

Revision as of 17:55, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:102508936..102508939,-p@chr10:102508936..102508939
-
Mm9::chr10:102607555..102607564,-p@chr10:102607555..102607564
-
Mm9::chr10:102607602..102607613,-p@chr10:102607602..102607613
-
Mm9::chr10:102608111..102608126,-p@chr10:102608111..102608126
-
Mm9::chr10:39251651..39251690,+p@chr10:39251651..39251690
+
Mm9::chr10:45527339..45527346,+p4@D030045P18Rik
Mm9::chr10:45527364..45527375,+p3@D030045P18Rik
Mm9::chr10:50614300..50614322,-p@chr10:50614300..50614322
-
Mm9::chr10:50614546..50614568,+p1@Sim1
Mm9::chr10:68587785..68587793,-p@chr10:68587785..68587793
-
Mm9::chr10:79277411..79277429,+p@chr10:79277411..79277429
+
Mm9::chr11:75720175..75720186,-p@chr11:75720175..75720186
-
Mm9::chr11:75720190..75720216,-p@chr11:75720190..75720216
-
Mm9::chr11:96112414..96112425,+p3@ENSMUST00000129907
Mm9::chr11:96153767..96153822,+p1@Hoxb6
Mm9::chr11:96168431..96168442,+p@chr11:96168431..96168442
+
Mm9::chr11:96168445..96168469,+p@chr11:96168445..96168469
+
Mm9::chr13:108834249..108834299,+p3@2810008M24Rik
Mm9::chr13:94853445..94853455,+p19@Lhfpl2
Mm9::chr17:86199756..86199767,-p@chr17:86199756..86199767
-
Mm9::chr19:44821081..44821112,+p@chr19:44821081..44821112
+
Mm9::chr19:44821149..44821161,+p@chr19:44821149..44821161
+
Mm9::chr19:44821192..44821202,+p@chr19:44821192..44821202
+
Mm9::chr19:44825291..44825299,-p@chr19:44825291..44825299
-
Mm9::chr19:44831187..44831204,+p@chr19:44831187..44831204
+
Mm9::chr19:44911831..44911835,+p@chr19:44911831..44911835
+
Mm9::chr1:14294623..14294631,-p14@Eya1
Mm9::chr1:75014856..75014870,-p@chr1:75014856..75014870
-
Mm9::chr2:160787107..160787116,-p6@Chd6
Mm9::chr2:163317391..163317413,+p@chr2:163317391..163317413
+
Mm9::chr2:33743382..33743397,-p6@Fam125b
Mm9::chr2:62250373..62250392,-p6@Dpp4
Mm9::chr2:74971729..74971738,-p@chr2:74971729..74971738
-
Mm9::chr2:74971765..74971779,-p@chr2:74971765..74971779
-
Mm9::chr2:74971811..74971824,-p@chr2:74971811..74971824
-
Mm9::chr3:29912058..29912071,-p6@Mecom
Mm9::chr3:98231695..98231716,+p@chr3:98231695..98231716
+
Mm9::chr4:82667033..82667039,-p10@Frem1
Mm9::chr5:103854739..103854748,-p@chr5:103854739..103854748
-
Mm9::chr5:103854767..103854780,-p@chr5:103854767..103854780
-
Mm9::chr5:140023924..140023936,+p@chr5:140023924..140023936
+
Mm9::chr5:140023949..140023958,+p@chr5:140023949..140023958
+
Mm9::chr5:142332646..142332665,+p6@Sdk1
Mm9::chr5:24755801..24755819,+p@chr5:24755801..24755819
+
Mm9::chr5:68004442..68004462,+p@chr5:68004442..68004462
+
Mm9::chr5:96803539..96803550,+p@chr5:96803539..96803550
+
Mm9::chr6:139450428..139450439,-p3@Rergl
Mm9::chr6:139450442..139450454,-p2@Rergl
Mm9::chr6:18285749..18285759,+p@chr6:18285749..18285759
+
Mm9::chr6:21936887..21936917,+p9@A430107O13Rik
Mm9::chr6:37996994..37996998,-p1@Svopl
Mm9::chr6:61154837..61154845,+p@chr6:61154837..61154845
+
Mm9::chr7:103681210..103681217,+p@chr7:103681210..103681217
+
Mm9::chr7:103681228..103681249,+p@chr7:103681228..103681249
+
Mm9::chr7:137720372..137720385,+p@chr7:137720372..137720385
+
Mm9::chr8:113605037..113605048,-p@chr8:113605037..113605048
-
Mm9::chr8:113605595..113605630,-p1@Clec18a
Mm9::chr8:113605713..113605724,-p5@Clec18a
Mm9::chr8:113605798..113605816,-p2@Clec18a
Mm9::chr8:118959620..118959632,-p@chr8:118959620..118959632
-
Mm9::chr8:86545343..86545374,+p1@Palm3
Mm9::chr8:91566534..91566554,-p@chr8:91566534..91566554
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0001657ureteric bud development0.0187279281203433
GO:0001656metanephros development0.0187279281203433
GO:0031129inductive cell-cell signaling0.0231115008345079
GO:0001822kidney development0.0231115008345079
GO:0001655urogenital system development0.0231115008345079
GO:0045165cell fate commitment0.0307770024211147
GO:0004287prolyl oligopeptidase activity0.0498376918235744



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
kidney2.18e-2214
kidney mesenchyme2.18e-2214
upper urinary tract2.18e-2214
kidney rudiment2.18e-2214
kidney field2.18e-2214
urinary system structure7.29e-1718
renal system7.59e-1619
cavitated compound organ4.20e-1421


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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