Coexpression cluster:C1713: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 9: | Line 9: | ||
|tf_chipseq_enrich=CCNT2#905;5:6.33620157696263:9.78880505817628e-05:0.00138960583318047!E2F1#1869;5:4.90738921487932:0.000351281809925646:0.00352459611363479!E2F4#1874;5:12.6680603152844:3.06319883889696e-06:0.000103399296553187!E2F6#1876;5:5.01715573169739:0.000314497859929779:0.0032261901574704!EGR1#1958;5:4.98817909481014:0.000323739800059071:0.00330605856833571!ELF1#1997;5:4.25809795880754:0.000714241693977684:0.00572791893398874!GABPB1#2553;4:5.65414706894574:0.00177669650209667:0.0109067422548918!HEY1#23462;5:4.04011104310571:0.000928885220517799:0.00673927360511694!HMGN3#9324;4:6.54283817868047:0.0010080127776835:0.00721957526323462!IRF1#3659;5:7.6371637535639:3.84754333311872e-05:0.000723633312025187!IRF3#3661;2:18.7927808845958:0.00433962977712151:0.0205853020072123!MAX#4149;5:6.45255550900712:8.93743970843928e-05:0.00130620943984004!MXI1#4601;3:5.97694297725558:0.00865300488936688:0.0329472885500962!MYC#4609;4:4.17782549728752:0.00569196903682344:0.0256754439699738!NFKB1#4790;4:4.39045073935507:0.00470773269252496:0.0222003384058615!NRF1#4899;3:7.32616766862654:0.00483968981711754:0.0226873901346532!PAX5#5079;4:5.33565242494226:0.00222338958618779:0.0127776693441846!SIN3A#25942;5:5.40888472681514:0.000215952267165727:0.00247871621392696!SMARCB1#6598;3:10.9516294686944:0.00151187284834318:0.00965149684646171!SP1#6667;5:5.6983813781409:0.00016639184371255:0.00204132476982204!SP2#6668;2:10.4614121975379:0.0135319118334714:0.04777591494459!SREBF1#6720;2:18.8023397761953:0.00433531272958737:0.0205779087472333!TAF1#6872;5:3.34304628574529:0.00239460009087031:0.013525670031931!TBP#6908;5:3.70677068709639:0.00142875510672112:0.00918206600152897!TFAP2C#7022;4:8.64738288788818:0.000339051887817405:0.00344826566479325!USF1#7391;4:5.08919942176637:0.0026686777536004:0.0147156301957905!YY1#7528;5:4.91117074985386:0.0003499314082136:0.00352595140785529 | |tf_chipseq_enrich=CCNT2#905;5:6.33620157696263:9.78880505817628e-05:0.00138960583318047!E2F1#1869;5:4.90738921487932:0.000351281809925646:0.00352459611363479!E2F4#1874;5:12.6680603152844:3.06319883889696e-06:0.000103399296553187!E2F6#1876;5:5.01715573169739:0.000314497859929779:0.0032261901574704!EGR1#1958;5:4.98817909481014:0.000323739800059071:0.00330605856833571!ELF1#1997;5:4.25809795880754:0.000714241693977684:0.00572791893398874!GABPB1#2553;4:5.65414706894574:0.00177669650209667:0.0109067422548918!HEY1#23462;5:4.04011104310571:0.000928885220517799:0.00673927360511694!HMGN3#9324;4:6.54283817868047:0.0010080127776835:0.00721957526323462!IRF1#3659;5:7.6371637535639:3.84754333311872e-05:0.000723633312025187!IRF3#3661;2:18.7927808845958:0.00433962977712151:0.0205853020072123!MAX#4149;5:6.45255550900712:8.93743970843928e-05:0.00130620943984004!MXI1#4601;3:5.97694297725558:0.00865300488936688:0.0329472885500962!MYC#4609;4:4.17782549728752:0.00569196903682344:0.0256754439699738!NFKB1#4790;4:4.39045073935507:0.00470773269252496:0.0222003384058615!NRF1#4899;3:7.32616766862654:0.00483968981711754:0.0226873901346532!PAX5#5079;4:5.33565242494226:0.00222338958618779:0.0127776693441846!SIN3A#25942;5:5.40888472681514:0.000215952267165727:0.00247871621392696!SMARCB1#6598;3:10.9516294686944:0.00151187284834318:0.00965149684646171!SP1#6667;5:5.6983813781409:0.00016639184371255:0.00204132476982204!SP2#6668;2:10.4614121975379:0.0135319118334714:0.04777591494459!SREBF1#6720;2:18.8023397761953:0.00433531272958737:0.0205779087472333!TAF1#6872;5:3.34304628574529:0.00239460009087031:0.013525670031931!TBP#6908;5:3.70677068709639:0.00142875510672112:0.00918206600152897!TFAP2C#7022;4:8.64738288788818:0.000339051887817405:0.00344826566479325!USF1#7391;4:5.08919942176637:0.0026686777536004:0.0147156301957905!YY1#7528;5:4.91117074985386:0.0003499314082136:0.00352595140785529 | ||
|tfbs_overrepresentation=0.23317,0.0958562,0.162009,0.078254,0.310241,0.43203,0.0706464,0.5903,0.0539364,0.0424746,0.221396,0.346629,0.294377,0.201017,0.235304,0.101024,0.223746,0.158251,0.0865245,0.173528,0.29418,0.0240268,0.13286,0.153106,0.0683222,0.332688,0.324018,0.0113103,0.227906,0.150721,0.31768,0.182756,0.0298713,0.322378,0.108398,0.136785,0.578129,0.070583,0.192426,0.108683,0.155571,0.0406818,0.222325,0.287476,0.193292,0.0596699,0.0625547,0.28382,0.178503,0.193726,0.243359,0.0886583,0.114185,0.150136,0.308837,0.0632035,0.172598,0.328738,0.127101,0.169687,0.0485674,0.236408,0.174369,0.123348,0.0892839,0.0827236,0.515105,0.0980005,0.139298,0.262613,0.547889,0.110232,0.143944,0.190944,0.012429,0.0283664,0.155593,0.0717582,0.0613084,0.0120583,0.0125594,0.348799,0.0698251,0.183986,0.436695,0.0852575,0.104918,0.323505,0.46357,0.102375,0.138802,0.0812726,0.00068607,0.0777027,0.138224,0.184264,0.430512,0.242703,0.149747,0.413729,0.0939617,0.416542,0.225088,0.0610111,0.337778,0.0672793,0.109136,0.497282,0.228612,0.407248,0.285407,0.0560173,0.23661,0.0293017,0.162943,0.0556189,0.0336673,0.0926302,0.220791,0.13579,0.262107,0.331577,0.222452,0.138843,0.164723,0.277102,0.146529,0.0245339,0.136609,0.214614,0.0973103,0.121587,0.0935301,0.0376876,0.200735,0.016024,0.105753,0.0905147,2.80622e-05,0.0065834,0.037671,0.203496,0.316207,0.246229,0.194394,0.112838,0.159217,0.00975686,0.0640569,0.193163,0.311509,0.227801,0.282656,0.0439093,0.070163,0.188135,0.121467,0.350865,0.0846706,0.0555742,0.349932,0.153706,0.186743,0.23397,0.412853,0.183121,0.065826,0.203135,0.0663482,0.463935,0.281162,0.218835,0.646289,0.0885874,0.129639,0.145577,0.22277,0.284267,0.27935,0.0586816,0.250461,0.195671,0.0452583,0.185103,0.11983,0.190123,0.286036,0.0660586,0.134265,0.272191,0.172119,0.292239,0.196376,0.351465,0.18064,0.0772176,0.126988,0.00501289,0.110187,0.176022,0.144361,0.0986228,0.0508565,0.0989516,0.21691,0.0903603,0.412989,0.240045,0.319604,0.279218,0.0752697,0.167805,0.193654,0.180992,0.464566,0.265567,0.0367027,0.162511,0.102771,0.165687,0.225173,0.540012,0.246322,0.253699,0.120044,0.201982,0.00214083,0.139142,0.0987108,0.09782,0.410084,0.554981,0.0687568,0.124225,0.1547,0.150448,0.0774663,0.398789,0.257365,0.331711,0.285222,0.511,0.158559,0.134615,0.186192,0.217494,0.132125,0.179065,0.540443,0.187334,0.250769,0.289141,0.289982,0.157983,0.158078,0.0347274,0.172268,0.313249,0.113261,0.766691,0.101058,0.274448,0.25718,0.204241,0.0568578,0.131428,0.131579,0.148683,0.188945,0.122666,0.419402,0.103245,0.387442,0.627158,0.14011,0.0626022,0.2074,0.769028,0.615662,0.252309,0.814323,0.748392,0.784283,0.0222115,0.493893,0.492619,0.396701,0.258806,0.541514,0.460217,0.675971,0.487888,0.568246,0.486439,0.364364,0.796904,0.410803,0.43779,0.579996,0.569955,0.766049,0.780281,0.292173,0.173748,0.284119,0.601223,0.176507,0.488132,0.336705,0.604733,0.545464,0.645432,0.824163,0.356237,0.706516,0.537972,0.591562,0.302575,0.385794,0.417358,0.450485,0.299354,0.470142,0.344006,0.688397,0.785741,0.426591,0.467379,0.762263,0.437202,0.628658,0.419367,0.592924,0.438692,0.293448,0.619033,0.541742,0.762222,0.790857,0.285074,0.334686,0.0713188,0.899362,0.415372,0.362164,0.289863,0.507647,0.721501,0.409489,0.80581,0.688223,0.699429,0.707862,0.379008,0.423719,0.288374,0.256985,0.109234,0.11883,0.288602,0.446598,0.429909,0.766165,0.588284,0.843506,0.379957,0.737273,0.628596,0.337121,0.464864,0.861932,0.0740433,0.121457,0.351733,0.256178,0.773103,0.687274,0.441154,0.503865,0.294103,0.43388,0.483295,0.852766,0.418989,0.935814,0.606622,0.350461,0.495024,0.307173,0.246694,0.407051,0.598317,0.666615,0.597346,0.702113,0.00643729,0.493489,0.229501,0.230597,0.555864,0.544572,0.25994,0.641833,0.383956,0.241286,0.0764074,0.217887,0.393543,0.214395,0.158849,0.379156,0.439833,0.427746,0.504398,0.456725,0.455709,0.453202,0.688249,0.708682,0.427794,0.398041,0.524026,0.347879,0.58021,0.593219,0.529253,0.64728,0.677026,0.319495,0.711229,0.827435,0.616333,0.407113,0.498776,0.738012,0.423517,0.0274367,0.636791,0.346389,0.251608,0.365107,0.539805,0.356278,0.295455,0.144104,0.0972855,0.710825,0.80526,0.508875,0.725283,0.512109,0.658411,0.578577,0.818493,0.231805,0.469232,0.113555,0.0910724,0.299839,0.126587,0.0940929,0.22877,0.343849,0.315824,0.622796,0.621499,0.29873,0.179502,0.43406,0.0715061,0.452515,0.201779,0.214491,0.171725,0.0169414,0.102448,0.191372,0.029672,0.453305,0.421335,0.561724,0.0762646,0.266371,0.183582,0.168118,0.145381,0.140277,0.251925,0.172066,0.0720324,0.00647589,0.19738,0.205854,0.32541,0.301472,0.507714,0.0818982,0.134306,0.108669,0.284804,0.178494,0.338195,0.490571,0.304235,0.210475,1.84792e-06,0.0790025,0.310539,0.00200928,0.203728,0.275452,0.288155,0.265827,0.141761,0.153627,0.0186891,0.342497,0.0157141,0.415228,0.00800917,0.272406,0.223952,0.327153,0.0496113,0.20949,0.0730994,0.0857377,0.323267,0.0319907,0.129414,0.157037,0.252398,0.197279,0.146467,0.0912686,0.425114,0.123863,0.218241,0.0242146,0.10708,0.327369,0.339826,0.12998,0.123097,0.254847,0.300809,0.0898207,0.126545,0.0918749,0.0686325,0.0569043,0.0639461,0.387306,0.267408,0.312064,0.080156,0.274185,0.180885,0.0545112,0.510703,0.33844,0.0649137,0.0974216,0.595767,0.195675,0.174786,0.176557,0.396547,0.0472148,0.0459878,0.229138,0.0639045,0.141461,0.0900204,0.228387,0.385962,0.334921,0.296227,0.208788,0.566117,0.36304,2.75722e-05,0.123626,0.270619,0.132705,0.285556,0.493429,0.233835,0.224471,0.262929,0.223204,0.143824,0.00371488,0.431098,0.0775891,0.153079,0.0771804,0.211515,0.125701,0.175283,0.204954,0.209341,0.306485,0.629422,0.084895,0.160115,0.0819954,0.10091,0.122658,0.151161,0.228398,0.056055,0.120552,0.41771,0.388874,0.830533,0.335207,0.434016,0.190688,0.299739,0.278645,0.381281,0.0940982,0.0780533,0.564811,0.0993772,0.274769,0.448923,0.11602,0.344528,0.436413,0.0585992,0.20045,0.274438,0.00304429,0.019241,0.319826,0.0643195,0.173868,0.109708,0.174594,0.0809806,0.154589,0.318794,0.122767,0.0749261,0.176858,0.114361,0.347759,0.242462,0.0620267,0.211111,0.0738743,0.0882327,0.183058,0.150073,0.270522,0.16872,0.341388,0.0934526,0.359135,0.123404,2.7493e-05,0.0316547,0.3033,0.0643653,0.163542,0.0294772,0.27134,0.500871,0.239667,0.10226,0.29809,0.235147,0.00132511,0.245965,0.116923,0.148426,0.0983658,0.228743,0.238223,0.156976,0.244789,0.267391,0.301441,0.21807,0.350528,0.382904,0.432408,0.190404,0.135865,0.488841,0.18137,0.180609,0.291283,0.273972,0.153023,0.400137,0.37958,0.22307,0.160699,0.391307,0.166736,0.181253,0.0422294,0.263877,0.146486,0.431348,0.262486,0.294204,1.49158e-05,0.288826,0.246621,0.463617,0.697373,0.0965376,0.377203,0.0432352,0.336564,0.35463,0.00204488,0.800557,0.0594155,0.222245,0.208795,0.0713793,0.212621,0.063279,0.1798,0.629713,0.581874,0.355154,0.730614,0.251388,0.537088,0.603804,0.629445,0.306963,0.0538109,0.172506,0.215897,0.550495,0.424482,0.248142,0.610475,0.629179,0.561689,0.672416,0.111362,0.623136,0.708698,0.270403,0.131557,0.349068,0.70429,0.476117,0.557035,0.427789,0.689998,0.386595,0.886619,0.433702,0.258394,0.277222,0.432123,0.759415,0.661773,0.149969,0.651196,0.392155,0.626931,0.371758,0.0422618,0.562417,0.380618,0.300573,0.254547,0.0309722,0.821811,0.680843,0.0197008,0.541378,0.0160059,0.660884,0.0456484,0.401389,0.234747,0.0560233,0.311289,0.318577,0.4488,0.088424,0.603509,0.511254,0.553178,0.246387,0.224252,0.587237,0.155054,0.466978,0.518234,0.257848,0.353942,0.192234,0.427276,0.400353,0.466967,0.283682,0.424668,0.247468,0.474058,0.583101,0.702164,0.477016,0.831202,0.498956,0.209091,0.55798,0.708394,5.41104e-06,0.723248,0.34194,0.592696,0.592314,0.644904,0.647996,0.763919,0.317485,0.633504,0.220564,0.556368,0.262394,0.307462,0.135076,0.469588,0.664443,0.274593,0.490712,0.541363,0.709432,0.583627,0.531474,0.720644,0.562305,0.528646,0.361524,0.00685623,0.412744,0.54408,0.62698,0.163034,0.415367,0.0918421,0.45585,0.36864,0.00811127,0.456862,0.453004,0.680686,0.196391,0.693441,0.382214,0.553161,0.639572,0.68995,0.339393,0.117434,0.306231,0.298354,0.646049,0.199987,0.457741,0.641611,0.426239,0.162155,0.656093,0.572661,0.412586,0.534679,0.41502,0.55475,0.66153,0.523749,0.499347,0.307426,0.790204,0.557732,0.490527,0.0384956,0.44799,0.813041,0.318338,0.276338,0.126433,0.417412,0.318174,0.0555558,0.295666,0.393022,0.293641,0.116969,0.401231,0.255983,0.297663,0.256708,0.338258,0.322052,0.145568,0.153833,0.261242,0.38389,0.54721,0.388459,0.321362,0.627637,0.280757,0.301366,0.340343,0.343265,0.501812,0.462092,0.336254,0.308589,0.291523,0.19697,0.309816,0.0537285,0.15063,0.198077,0.281455,0.348739,0.419895,0.138495,0.208834,0.32256,0.377566,0.342366,0.109684,0.322704,0.403482,0.181288,0.230841,0.352328,0.255358,0.351665,0.265112,0.0633313,0.10772,0.0854747,0.0747609,0.406458,0.312881,0.512825,0.244656,0.192188,0.158985,0.174153,0.0972854,0.333309,0.249919,0.339517,0.303699,0.198326,0.394084,0.458518,0.282501,0.252005,0.390891,0.238377,0.334983,0.197875,0.287909,0.289389,0.117618,0.392533,0.396962,0.316002,0.330317,0.0582923,0.225079,0.300542,0.379651,0.185715,0.345505,0.375521,0.271405,0.311201,0.221943,0.306427,0.367733,0.246925,0.208775,0.390438,0.343014,0.270094,0.276922,0.156279,0.313647,0.461742,0.422872,0.336468,0.13327,0.313545,0.17149,0.0877361,0.0880065,0.238969,0.126615,0.0669467,0.0879453,0.474066,0.396935,0.326779,0.292869,0.358198,0.29552,0.131776,0.158116,0.104606,0.0203447,0.104167,0.168186,0.108081,0.123829,0.205215,0.175247,0.0724304,0.109077,0.144842,0.0604892,0.214671,0.316879,0.0216036,0.430541,0.508546,0.224871,0.398887,0.389061,0.310732,0.349611,0.445995,0.0863731,0.278202,0.426488,0.400591,0.209809,0.253154,0.319519,0.309489,0.430805,0.362154,0.480785,0.185476,0.336314,0.344469,0.184651,0.303359,0.297596,0.42392,0.425912,0.380826,0.259046,0.345068,0.0120295,0.483953,0.347171,0.321735,0.0126239,0.13907,0.470121,0.269432,0.250466,0.409882,0.115686,0.408975,0.162633,0.0668707,0.27567,0.248127,0.33299,0.384731,0.319112,0.526476 | |tfbs_overrepresentation=0.23317,0.0958562,0.162009,0.078254,0.310241,0.43203,0.0706464,0.5903,0.0539364,0.0424746,0.221396,0.346629,0.294377,0.201017,0.235304,0.101024,0.223746,0.158251,0.0865245,0.173528,0.29418,0.0240268,0.13286,0.153106,0.0683222,0.332688,0.324018,0.0113103,0.227906,0.150721,0.31768,0.182756,0.0298713,0.322378,0.108398,0.136785,0.578129,0.070583,0.192426,0.108683,0.155571,0.0406818,0.222325,0.287476,0.193292,0.0596699,0.0625547,0.28382,0.178503,0.193726,0.243359,0.0886583,0.114185,0.150136,0.308837,0.0632035,0.172598,0.328738,0.127101,0.169687,0.0485674,0.236408,0.174369,0.123348,0.0892839,0.0827236,0.515105,0.0980005,0.139298,0.262613,0.547889,0.110232,0.143944,0.190944,0.012429,0.0283664,0.155593,0.0717582,0.0613084,0.0120583,0.0125594,0.348799,0.0698251,0.183986,0.436695,0.0852575,0.104918,0.323505,0.46357,0.102375,0.138802,0.0812726,0.00068607,0.0777027,0.138224,0.184264,0.430512,0.242703,0.149747,0.413729,0.0939617,0.416542,0.225088,0.0610111,0.337778,0.0672793,0.109136,0.497282,0.228612,0.407248,0.285407,0.0560173,0.23661,0.0293017,0.162943,0.0556189,0.0336673,0.0926302,0.220791,0.13579,0.262107,0.331577,0.222452,0.138843,0.164723,0.277102,0.146529,0.0245339,0.136609,0.214614,0.0973103,0.121587,0.0935301,0.0376876,0.200735,0.016024,0.105753,0.0905147,2.80622e-05,0.0065834,0.037671,0.203496,0.316207,0.246229,0.194394,0.112838,0.159217,0.00975686,0.0640569,0.193163,0.311509,0.227801,0.282656,0.0439093,0.070163,0.188135,0.121467,0.350865,0.0846706,0.0555742,0.349932,0.153706,0.186743,0.23397,0.412853,0.183121,0.065826,0.203135,0.0663482,0.463935,0.281162,0.218835,0.646289,0.0885874,0.129639,0.145577,0.22277,0.284267,0.27935,0.0586816,0.250461,0.195671,0.0452583,0.185103,0.11983,0.190123,0.286036,0.0660586,0.134265,0.272191,0.172119,0.292239,0.196376,0.351465,0.18064,0.0772176,0.126988,0.00501289,0.110187,0.176022,0.144361,0.0986228,0.0508565,0.0989516,0.21691,0.0903603,0.412989,0.240045,0.319604,0.279218,0.0752697,0.167805,0.193654,0.180992,0.464566,0.265567,0.0367027,0.162511,0.102771,0.165687,0.225173,0.540012,0.246322,0.253699,0.120044,0.201982,0.00214083,0.139142,0.0987108,0.09782,0.410084,0.554981,0.0687568,0.124225,0.1547,0.150448,0.0774663,0.398789,0.257365,0.331711,0.285222,0.511,0.158559,0.134615,0.186192,0.217494,0.132125,0.179065,0.540443,0.187334,0.250769,0.289141,0.289982,0.157983,0.158078,0.0347274,0.172268,0.313249,0.113261,0.766691,0.101058,0.274448,0.25718,0.204241,0.0568578,0.131428,0.131579,0.148683,0.188945,0.122666,0.419402,0.103245,0.387442,0.627158,0.14011,0.0626022,0.2074,0.769028,0.615662,0.252309,0.814323,0.748392,0.784283,0.0222115,0.493893,0.492619,0.396701,0.258806,0.541514,0.460217,0.675971,0.487888,0.568246,0.486439,0.364364,0.796904,0.410803,0.43779,0.579996,0.569955,0.766049,0.780281,0.292173,0.173748,0.284119,0.601223,0.176507,0.488132,0.336705,0.604733,0.545464,0.645432,0.824163,0.356237,0.706516,0.537972,0.591562,0.302575,0.385794,0.417358,0.450485,0.299354,0.470142,0.344006,0.688397,0.785741,0.426591,0.467379,0.762263,0.437202,0.628658,0.419367,0.592924,0.438692,0.293448,0.619033,0.541742,0.762222,0.790857,0.285074,0.334686,0.0713188,0.899362,0.415372,0.362164,0.289863,0.507647,0.721501,0.409489,0.80581,0.688223,0.699429,0.707862,0.379008,0.423719,0.288374,0.256985,0.109234,0.11883,0.288602,0.446598,0.429909,0.766165,0.588284,0.843506,0.379957,0.737273,0.628596,0.337121,0.464864,0.861932,0.0740433,0.121457,0.351733,0.256178,0.773103,0.687274,0.441154,0.503865,0.294103,0.43388,0.483295,0.852766,0.418989,0.935814,0.606622,0.350461,0.495024,0.307173,0.246694,0.407051,0.598317,0.666615,0.597346,0.702113,0.00643729,0.493489,0.229501,0.230597,0.555864,0.544572,0.25994,0.641833,0.383956,0.241286,0.0764074,0.217887,0.393543,0.214395,0.158849,0.379156,0.439833,0.427746,0.504398,0.456725,0.455709,0.453202,0.688249,0.708682,0.427794,0.398041,0.524026,0.347879,0.58021,0.593219,0.529253,0.64728,0.677026,0.319495,0.711229,0.827435,0.616333,0.407113,0.498776,0.738012,0.423517,0.0274367,0.636791,0.346389,0.251608,0.365107,0.539805,0.356278,0.295455,0.144104,0.0972855,0.710825,0.80526,0.508875,0.725283,0.512109,0.658411,0.578577,0.818493,0.231805,0.469232,0.113555,0.0910724,0.299839,0.126587,0.0940929,0.22877,0.343849,0.315824,0.622796,0.621499,0.29873,0.179502,0.43406,0.0715061,0.452515,0.201779,0.214491,0.171725,0.0169414,0.102448,0.191372,0.029672,0.453305,0.421335,0.561724,0.0762646,0.266371,0.183582,0.168118,0.145381,0.140277,0.251925,0.172066,0.0720324,0.00647589,0.19738,0.205854,0.32541,0.301472,0.507714,0.0818982,0.134306,0.108669,0.284804,0.178494,0.338195,0.490571,0.304235,0.210475,1.84792e-06,0.0790025,0.310539,0.00200928,0.203728,0.275452,0.288155,0.265827,0.141761,0.153627,0.0186891,0.342497,0.0157141,0.415228,0.00800917,0.272406,0.223952,0.327153,0.0496113,0.20949,0.0730994,0.0857377,0.323267,0.0319907,0.129414,0.157037,0.252398,0.197279,0.146467,0.0912686,0.425114,0.123863,0.218241,0.0242146,0.10708,0.327369,0.339826,0.12998,0.123097,0.254847,0.300809,0.0898207,0.126545,0.0918749,0.0686325,0.0569043,0.0639461,0.387306,0.267408,0.312064,0.080156,0.274185,0.180885,0.0545112,0.510703,0.33844,0.0649137,0.0974216,0.595767,0.195675,0.174786,0.176557,0.396547,0.0472148,0.0459878,0.229138,0.0639045,0.141461,0.0900204,0.228387,0.385962,0.334921,0.296227,0.208788,0.566117,0.36304,2.75722e-05,0.123626,0.270619,0.132705,0.285556,0.493429,0.233835,0.224471,0.262929,0.223204,0.143824,0.00371488,0.431098,0.0775891,0.153079,0.0771804,0.211515,0.125701,0.175283,0.204954,0.209341,0.306485,0.629422,0.084895,0.160115,0.0819954,0.10091,0.122658,0.151161,0.228398,0.056055,0.120552,0.41771,0.388874,0.830533,0.335207,0.434016,0.190688,0.299739,0.278645,0.381281,0.0940982,0.0780533,0.564811,0.0993772,0.274769,0.448923,0.11602,0.344528,0.436413,0.0585992,0.20045,0.274438,0.00304429,0.019241,0.319826,0.0643195,0.173868,0.109708,0.174594,0.0809806,0.154589,0.318794,0.122767,0.0749261,0.176858,0.114361,0.347759,0.242462,0.0620267,0.211111,0.0738743,0.0882327,0.183058,0.150073,0.270522,0.16872,0.341388,0.0934526,0.359135,0.123404,2.7493e-05,0.0316547,0.3033,0.0643653,0.163542,0.0294772,0.27134,0.500871,0.239667,0.10226,0.29809,0.235147,0.00132511,0.245965,0.116923,0.148426,0.0983658,0.228743,0.238223,0.156976,0.244789,0.267391,0.301441,0.21807,0.350528,0.382904,0.432408,0.190404,0.135865,0.488841,0.18137,0.180609,0.291283,0.273972,0.153023,0.400137,0.37958,0.22307,0.160699,0.391307,0.166736,0.181253,0.0422294,0.263877,0.146486,0.431348,0.262486,0.294204,1.49158e-05,0.288826,0.246621,0.463617,0.697373,0.0965376,0.377203,0.0432352,0.336564,0.35463,0.00204488,0.800557,0.0594155,0.222245,0.208795,0.0713793,0.212621,0.063279,0.1798,0.629713,0.581874,0.355154,0.730614,0.251388,0.537088,0.603804,0.629445,0.306963,0.0538109,0.172506,0.215897,0.550495,0.424482,0.248142,0.610475,0.629179,0.561689,0.672416,0.111362,0.623136,0.708698,0.270403,0.131557,0.349068,0.70429,0.476117,0.557035,0.427789,0.689998,0.386595,0.886619,0.433702,0.258394,0.277222,0.432123,0.759415,0.661773,0.149969,0.651196,0.392155,0.626931,0.371758,0.0422618,0.562417,0.380618,0.300573,0.254547,0.0309722,0.821811,0.680843,0.0197008,0.541378,0.0160059,0.660884,0.0456484,0.401389,0.234747,0.0560233,0.311289,0.318577,0.4488,0.088424,0.603509,0.511254,0.553178,0.246387,0.224252,0.587237,0.155054,0.466978,0.518234,0.257848,0.353942,0.192234,0.427276,0.400353,0.466967,0.283682,0.424668,0.247468,0.474058,0.583101,0.702164,0.477016,0.831202,0.498956,0.209091,0.55798,0.708394,5.41104e-06,0.723248,0.34194,0.592696,0.592314,0.644904,0.647996,0.763919,0.317485,0.633504,0.220564,0.556368,0.262394,0.307462,0.135076,0.469588,0.664443,0.274593,0.490712,0.541363,0.709432,0.583627,0.531474,0.720644,0.562305,0.528646,0.361524,0.00685623,0.412744,0.54408,0.62698,0.163034,0.415367,0.0918421,0.45585,0.36864,0.00811127,0.456862,0.453004,0.680686,0.196391,0.693441,0.382214,0.553161,0.639572,0.68995,0.339393,0.117434,0.306231,0.298354,0.646049,0.199987,0.457741,0.641611,0.426239,0.162155,0.656093,0.572661,0.412586,0.534679,0.41502,0.55475,0.66153,0.523749,0.499347,0.307426,0.790204,0.557732,0.490527,0.0384956,0.44799,0.813041,0.318338,0.276338,0.126433,0.417412,0.318174,0.0555558,0.295666,0.393022,0.293641,0.116969,0.401231,0.255983,0.297663,0.256708,0.338258,0.322052,0.145568,0.153833,0.261242,0.38389,0.54721,0.388459,0.321362,0.627637,0.280757,0.301366,0.340343,0.343265,0.501812,0.462092,0.336254,0.308589,0.291523,0.19697,0.309816,0.0537285,0.15063,0.198077,0.281455,0.348739,0.419895,0.138495,0.208834,0.32256,0.377566,0.342366,0.109684,0.322704,0.403482,0.181288,0.230841,0.352328,0.255358,0.351665,0.265112,0.0633313,0.10772,0.0854747,0.0747609,0.406458,0.312881,0.512825,0.244656,0.192188,0.158985,0.174153,0.0972854,0.333309,0.249919,0.339517,0.303699,0.198326,0.394084,0.458518,0.282501,0.252005,0.390891,0.238377,0.334983,0.197875,0.287909,0.289389,0.117618,0.392533,0.396962,0.316002,0.330317,0.0582923,0.225079,0.300542,0.379651,0.185715,0.345505,0.375521,0.271405,0.311201,0.221943,0.306427,0.367733,0.246925,0.208775,0.390438,0.343014,0.270094,0.276922,0.156279,0.313647,0.461742,0.422872,0.336468,0.13327,0.313545,0.17149,0.0877361,0.0880065,0.238969,0.126615,0.0669467,0.0879453,0.474066,0.396935,0.326779,0.292869,0.358198,0.29552,0.131776,0.158116,0.104606,0.0203447,0.104167,0.168186,0.108081,0.123829,0.205215,0.175247,0.0724304,0.109077,0.144842,0.0604892,0.214671,0.316879,0.0216036,0.430541,0.508546,0.224871,0.398887,0.389061,0.310732,0.349611,0.445995,0.0863731,0.278202,0.426488,0.400591,0.209809,0.253154,0.319519,0.309489,0.430805,0.362154,0.480785,0.185476,0.336314,0.344469,0.184651,0.303359,0.297596,0.42392,0.425912,0.380826,0.259046,0.345068,0.0120295,0.483953,0.347171,0.321735,0.0126239,0.13907,0.470121,0.269432,0.250466,0.409882,0.115686,0.408975,0.162633,0.0668707,0.27567,0.248127,0.33299,0.384731,0.319112,0.526476 | ||
|tfbs_overrepresentation_for_novel_motifs=2.1885,0.452433,1.25018,0.654974,0.454983,0.653236,0.733342,0.324142,0.321368,0.345702,0.621241,0.778743,0.274093,0.721271,0.453496,0.478935,0.963929,0.395009,0.784337,0.501863,0.500405,0.770467,0.645033,0.44943,0.549618,0.802434,0.25115,1.55072,2.02225,0.659743,0.598009,1.00172,0.359091,0.758594,2.81341,0.432883,3.81581,0.654459,0.388123,0.815792,0.415749,0.580638,0.821929,0.451846,0.218848,1.32072,0.734485,0.609718,0.124583,0.458489,0.817229,0.746838,0.191745,1.08035,1.2359,0.724351,0.4631,0.689906,0.233662,0.688844,1.04369,0.736968,0.321912,0.935408,0.755773,0.899893,1.32544,1.69665,0.991065,1.53343,1.39076,0.880217,1.66643,1.23387,0.741483,0.255232,0.675933,0.917983,0.987729,1.34093,0.293154,0.934302,0.755403,0.327263,1.18161,1.37242,0.49825,0.228496,0.844289,1.79645,1.41984,1.15413,1.01895,0.367039,0.455791,0.99322,0.28626,1.06255,0.849074,0.211081,0.389604,1.01316,1.05685,0.967698,0.88799,1.49565,3.5944,0.717647,0.549347,1.11542,0.512457,1.05402,0.494368,0.631235,1.37132,0.412056,0.597842,0.596731,0.897476,0.370186,1.22546,0.841768,0.650322,0.767198,1.48307,0.918767,0.72668,1.02407,1.2687,0.382577,1.15483,0.601055,1.28328,0.763715,1.43285,0.221105,0.591636,0.643339,1.38998,2.25246,1.84906,1.35224,0.728494,1.05895,0.889806,0.680988,0.87256,2.09294,0.577088,0.953361,0.177807,1.87689,1.15522,0.312599,0.736459,1.56426,0.827475,0.439798,0.54968,0.518696,1.35101,1.13636,0.98692,1.29666,0.906429,0.754576,0.35004,0.731946,0.233587 | |||
}} | }} | ||
Revision as of 15:03, 26 November 2012
Full id: C1713_Alveolar_Renal_Hodgkin_chronic_MCF7_Placental_Melanocyte
Phase1 CAGE Peaks
| Hg19::chr14:104181771..104181827,- | p1@XRCC3 |
| Hg19::chr16:3030386..3030400,- | p2@PKMYT1 |
| Hg19::chr16:3030407..3030489,- | p1@PKMYT1 |
| Hg19::chr19:12917364..12917407,+ | p2@RNASEH2A |
| Hg19::chr19:14247387..14247409,- | p1@ASF1B |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
No results for this coexpression
Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data
| GO ID | GO name | FDR corrected p-value |
|---|---|---|
| GO:0006259 | DNA metabolic process | 0.0279660708108065 |
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>
| Ontology term | p-value | n |
|---|---|---|
| epithelial cell | 4.78e-23 | 253 |
| animal cell | 5.26e-16 | 679 |
| eukaryotic cell | 5.26e-16 | 679 |
| native cell | 2.12e-11 | 722 |
| embryonic cell | 1.63e-10 | 250 |
| migratory neural crest cell | 5.70e-09 | 41 |
| epithelial cell of nephron | 7.32e-07 | 15 |
| neurectodermal cell | 9.82e-07 | 59 |
| Ontology term | p-value | n |
|---|---|---|
| larynx | 2.89e-07 | 9 |
| nephron epithelium | 7.32e-07 | 15 |
| renal tubule | 7.32e-07 | 15 |
| nephron tubule | 7.32e-07 | 15 |
| nephron | 7.32e-07 | 15 |
| uriniferous tubule | 7.32e-07 | 15 |
| nephrogenic mesenchyme | 7.32e-07 | 15 |
| Ontology term | p-value | n |
|---|---|---|
| cancer | 6.75e-38 | 235 |
| disease of cellular proliferation | 5.77e-37 | 239 |
| cell type cancer | 9.89e-19 | 143 |
| organ system cancer | 8.91e-18 | 137 |
| hematologic cancer | 2.32e-17 | 51 |
| immune system cancer | 2.32e-17 | 51 |
| carcinoma | 1.96e-15 | 106 |
| leukemia | 4.45e-14 | 39 |
| myeloid leukemia | 1.40e-10 | 31 |
Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
|
{{{tfbs_overrepresentation_jaspar}}} |
ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data
(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)
| TF | #promoters | Enrichment | p-value | q-value |
|---|---|---|---|---|
| CCNT2#905 | 5 | 6.33620157696263 | 9.78880505817628e-05 | 0.00138960583318047 |
| E2F1#1869 | 5 | 4.90738921487932 | 0.000351281809925646 | 0.00352459611363479 |
| E2F4#1874 | 5 | 12.6680603152844 | 3.06319883889696e-06 | 0.000103399296553187 |
| E2F6#1876 | 5 | 5.01715573169739 | 0.000314497859929779 | 0.0032261901574704 |
| EGR1#1958 | 5 | 4.98817909481014 | 0.000323739800059071 | 0.00330605856833571 |
| ELF1#1997 | 5 | 4.25809795880754 | 0.000714241693977684 | 0.00572791893398874 |
| GABPB1#2553 | 4 | 5.65414706894574 | 0.00177669650209667 | 0.0109067422548918 |
| HEY1#23462 | 5 | 4.04011104310571 | 0.000928885220517799 | 0.00673927360511694 |
| HMGN3#9324 | 4 | 6.54283817868047 | 0.0010080127776835 | 0.00721957526323462 |
| IRF1#3659 | 5 | 7.6371637535639 | 3.84754333311872e-05 | 0.000723633312025187 |
| IRF3#3661 | 2 | 18.7927808845958 | 0.00433962977712151 | 0.0205853020072123 |
| MAX#4149 | 5 | 6.45255550900712 | 8.93743970843928e-05 | 0.00130620943984004 |
| MXI1#4601 | 3 | 5.97694297725558 | 0.00865300488936688 | 0.0329472885500962 |
| MYC#4609 | 4 | 4.17782549728752 | 0.00569196903682344 | 0.0256754439699738 |
| NFKB1#4790 | 4 | 4.39045073935507 | 0.00470773269252496 | 0.0222003384058615 |
| NRF1#4899 | 3 | 7.32616766862654 | 0.00483968981711754 | 0.0226873901346532 |
| PAX5#5079 | 4 | 5.33565242494226 | 0.00222338958618779 | 0.0127776693441846 |
| SIN3A#25942 | 5 | 5.40888472681514 | 0.000215952267165727 | 0.00247871621392696 |
| SMARCB1#6598 | 3 | 10.9516294686944 | 0.00151187284834318 | 0.00965149684646171 |
| SP1#6667 | 5 | 5.6983813781409 | 0.00016639184371255 | 0.00204132476982204 |
| SP2#6668 | 2 | 10.4614121975379 | 0.0135319118334714 | 0.04777591494459 |
| SREBF1#6720 | 2 | 18.8023397761953 | 0.00433531272958737 | 0.0205779087472333 |
| TAF1#6872 | 5 | 3.34304628574529 | 0.00239460009087031 | 0.013525670031931 |
| TBP#6908 | 5 | 3.70677068709639 | 0.00142875510672112 | 0.00918206600152897 |
| TFAP2C#7022 | 4 | 8.64738288788818 | 0.000339051887817405 | 0.00344826566479325 |
| USF1#7391 | 4 | 5.08919942176637 | 0.0026686777536004 | 0.0147156301957905 |
| YY1#7528 | 5 | 4.91117074985386 | 0.0003499314082136 | 0.00352595140785529 |
Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data
This analysis result is provided for C0 - C305 clusters.
