FFCP PHASE1:Hg19::chr2:211466992..211467008,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 9: | Line 9: | ||
|ontology_enrichment_celltype=CL:0002150!2.80e-11!3;CL:0000861!2.80e-11!3 | |ontology_enrichment_celltype=CL:0002150!2.80e-11!3;CL:0000861!2.80e-11!3 | ||
|ontology_enrichment_celltype_v019=CL:0000182;1.13e-07;12 | |ontology_enrichment_celltype_v019=CL:0000182;1.13e-07;12 | ||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.03e-07,12;CL:0000066,3.89e-07,253 | |||
|ontology_enrichment_development_v019=UBERON:0008947;8.31e-32;29 | |ontology_enrichment_development_v019=UBERON:0008947;8.31e-32;29 | ||
|ontology_enrichment_disease=DOID:305!7.52e-09!106;DOID:0050687!2.62e-08!143 | |ontology_enrichment_disease=DOID:305!7.52e-09!106;DOID:0050687!2.62e-08!143 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2=DOID:305,2.99e-13,106;DOID:0050687,2.83e-09,143 | |||
|ontology_enrichment_uberon=UBERON:0001737!2.48e-31!9;UBERON:0001557!8.55e-17!19;UBERON:0001041!4.76e-10!98;UBERON:0009497!3.81e-09!25;UBERON:0000015!3.81e-09!25;UBERON:0002423!3.81e-09!25;UBERON:0006235!3.81e-09!25;UBERON:0004161!3.81e-09!25;UBERON:0008835!1.97e-08!22;UBERON:0003894!1.97e-08!22;UBERON:0009854!5.26e-08!23;UBERON:0004921!5.46e-08!129;UBERON:0004185!5.46e-08!129;UBERON:0002107!9.62e-08!19;UBERON:0006925!9.62e-08!19;UBERON:0008836!9.62e-08!19;UBERON:0008947!1.89e-07!38;UBERON:0003258!1.89e-07!38;UBERON:0007499!2.95e-07!25;UBERON:0001007!3.19e-07!155;UBERON:0001555!3.19e-07!155;UBERON:0007026!3.19e-07!155;UBERON:0000077!3.70e-07!130;UBERON:0000072!5.65e-07!46;UBERON:0001048!6.01e-07!168;UBERON:0009856!6.32e-07!26;UBERON:0000065!7.87e-07!53;UBERON:0004119!7.89e-07!169;UBERON:0000925!7.89e-07!169;UBERON:0006595!7.89e-07!169 | |ontology_enrichment_uberon=UBERON:0001737!2.48e-31!9;UBERON:0001557!8.55e-17!19;UBERON:0001041!4.76e-10!98;UBERON:0009497!3.81e-09!25;UBERON:0000015!3.81e-09!25;UBERON:0002423!3.81e-09!25;UBERON:0006235!3.81e-09!25;UBERON:0004161!3.81e-09!25;UBERON:0008835!1.97e-08!22;UBERON:0003894!1.97e-08!22;UBERON:0009854!5.26e-08!23;UBERON:0004921!5.46e-08!129;UBERON:0004185!5.46e-08!129;UBERON:0002107!9.62e-08!19;UBERON:0006925!9.62e-08!19;UBERON:0008836!9.62e-08!19;UBERON:0008947!1.89e-07!38;UBERON:0003258!1.89e-07!38;UBERON:0007499!2.95e-07!25;UBERON:0001007!3.19e-07!155;UBERON:0001555!3.19e-07!155;UBERON:0007026!3.19e-07!155;UBERON:0000077!3.70e-07!130;UBERON:0000072!5.65e-07!46;UBERON:0001048!6.01e-07!168;UBERON:0009856!6.32e-07!26;UBERON:0000065!7.87e-07!53;UBERON:0004119!7.89e-07!169;UBERON:0000925!7.89e-07!169;UBERON:0006595!7.89e-07!169 | ||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.49e-85;9!UBERON:0001557;1.49e-85;9!UBERON:0000072;1.65e-22;37!UBERON:0000065;1.50e-18;44!UBERON:0002107;2.59e-12;19!UBERON:0006925;2.59e-12;19!UBERON:0002423;2.50e-09;25!UBERON:0001004;2.38e-08;65!UBERON:0002365;1.70e-07;31!UBERON:0002330;1.70e-07;31 | |ontology_enrichment_uberon_v019=UBERON:0001737;1.49e-85;9!UBERON:0001557;1.49e-85;9!UBERON:0000072;1.65e-22;37!UBERON:0000065;1.50e-18;44!UBERON:0002107;2.59e-12;19!UBERON:0006925;2.59e-12;19!UBERON:0002423;2.50e-09;25!UBERON:0001004;2.38e-08;65!UBERON:0002365;1.70e-07;31!UBERON:0002330;1.70e-07;31 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,9.66e-86,9;UBERON:0001557,4.47e-40,19;UBERON:0008947,5.46e-24,38;UBERON:0003258,5.46e-24,38;UBERON:0001041,2.04e-22,87;UBERON:0000072,4.01e-19,47;UBERON:0004921,4.52e-18,118;UBERON:0000065,1.86e-16,54;UBERON:0001007,2.94e-14,145;UBERON:0001555,2.94e-14,145;UBERON:0007026,2.94e-14,145;UBERON:0004119,1.09e-12,160;UBERON:0000925,1.09e-12,160;UBERON:0006595,1.09e-12,160;UBERON:0002107,2.38e-12,19;UBERON:0006925,2.38e-12,19;UBERON:0008836,2.38e-12,19;UBERON:0001004,1.30e-11,74;UBERON:0001048,4.35e-11,160;UBERON:0008835,1.19e-10,22;UBERON:0003894,1.19e-10,22;UBERON:0009854,3.50e-10,23;UBERON:0011216,1.73e-09,223;UBERON:0007499,2.34e-09,25;UBERON:0009497,2.34e-09,25;UBERON:0000015,2.34e-09,25;UBERON:0002423,2.34e-09,25;UBERON:0006235,2.34e-09,25;UBERON:0004161,2.34e-09,25;UBERON:0009856,5.43e-09,26;UBERON:0002365,1.62e-07,31;UBERON:0002330,1.62e-07,31 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,3.31259040111563,3.70886318171824,3.85617647813571,5.07352274569012,3.7039505495709,3.79632990577755,4.1797705529651,2.74710051175484,3.46272441251751,0,0,0,0,12.6755034821831,1.96565443335525,1.77236972004421,0,0,0,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.9273691048295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.659006605437454,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0.156679895773023,0,0,0,0,0,0,0,0,0,0.19538809540204,0.278406173895242,0,0,0,0,0.18714054040822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30726156222788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242780379534093,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.09620260125072,1.90032224424082,2.46346371159628,0,0.0882561266915003,0,0,0,0,0.195551382734803,0,0,0,0,0,0,0,0,0,0.135904206073614,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0.429226048136571,0.223171457441873,0,0,0,0,0.0824158583811665,0.13480708770837,0,0,0,0,0.160753148465019,0.137539436597234,0,0,0,0,0,0,0,0,2.51002275065983,0,0.714695326373367,0,0,0,0,0,0,0,0,0,1.61207457045891,2.65013777824443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285465333544967,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244736704506468,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169732529954025,0,0.123935764259002,0,0,0.0788617450012534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261906694481422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,1.74847648403166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380095503034311,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,3.31259040111563,3.70886318171824,3.85617647813571,5.07352274569012,3.7039505495709,3.79632990577755,4.1797705529651,2.74710051175484,3.46272441251751,0,0,0,0,12.6755034821831,1.96565443335525,1.77236972004421,0,0,0,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.9273691048295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.659006605437454,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0.156679895773023,0,0,0,0,0,0,0,0,0,0.19538809540204,0.278406173895242,0,0,0,0,0.18714054040822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30726156222788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242780379534093,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.09620260125072,1.90032224424082,2.46346371159628,0,0.0882561266915003,0,0,0,0,0.195551382734803,0,0,0,0,0,0,0,0,0,0.135904206073614,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0.429226048136571,0.223171457441873,0,0,0,0,0.0824158583811665,0.13480708770837,0,0,0,0,0.160753148465019,0.137539436597234,0,0,0,0,0,0,0,0,2.51002275065983,0,0.714695326373367,0,0,0,0,0,0,0,0,0,1.61207457045891,2.65013777824443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285465333544967,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244736704506468,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169732529954025,0,0.123935764259002,0,0,0.0788617450012534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261906694481422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,1.74847648403166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380095503034311,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr2:211466992..211467008,+ | |short_description=p@chr2:211466992..211467008,+ | ||
}} | }} |
Revision as of 21:23, 18 November 2012
Short description: | p@chr2:211466992..211467008, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr2:211466992..211467008, + |
Coexpression cluster: | C768_Hepatocyte_liver_cervical_Hep2_epitheloid_large_nonsmall |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.03e-07 | 12 |
epithelial cell | 3.89e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
larynx | 9.66e-86 | 9 |
upper respiratory tract | 4.47e-40 | 19 |
respiratory primordium | 5.46e-24 | 38 |
endoderm of foregut | 5.46e-24 | 38 |
foregut | 2.04e-22 | 87 |
segment of respiratory tract | 4.01e-19 | 47 |
subdivision of digestive tract | 4.52e-18 | 118 |
respiratory tract | 1.86e-16 | 54 |
digestive system | 2.94e-14 | 145 |
digestive tract | 2.94e-14 | 145 |
primitive gut | 2.94e-14 | 145 |
endoderm-derived structure | 1.09e-12 | 160 |
endoderm | 1.09e-12 | 160 |
presumptive endoderm | 1.09e-12 | 160 |
liver | 2.38e-12 | 19 |
digestive gland | 2.38e-12 | 19 |
liver bud | 2.38e-12 | 19 |
respiratory system | 1.30e-11 | 74 |
primordium | 4.35e-11 | 160 |
hepatic diverticulum | 1.19e-10 | 22 |
liver primordium | 1.19e-10 | 22 |
digestive tract diverticulum | 3.50e-10 | 23 |
organ system subdivision | 1.73e-09 | 223 |
epithelial sac | 2.34e-09 | 25 |
epithelium of foregut-midgut junction | 2.34e-09 | 25 |
anatomical boundary | 2.34e-09 | 25 |
hepatobiliary system | 2.34e-09 | 25 |
foregut-midgut junction | 2.34e-09 | 25 |
septum transversum | 2.34e-09 | 25 |
sac | 5.43e-09 | 26 |
exocrine gland | 1.62e-07 | 31 |
exocrine system | 1.62e-07 | 31 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.99e-13 | 106 |
cell type cancer | 2.83e-09 | 143 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.