Personal tools

MCL coexpression mm9:3445: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 3: Line 3:
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225398799517185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0862481039219708,0,0.107200755467032,0,0,0,0,0,0,0,0.823791090100101,0.71866174498074,0.681511539650463,0,0.276299728348189,0,0,0,0.862822974498269,0.938738123701237,0,0.103807782330171,0.0829019901297716,0.516562855238017,0.274959667229359,0.135918568883708,0.222955214720375,0,0.322458878535173,0.214429664803005,0.116346380288332,1.20148316929498,1.11648716589158,1.17795936333761,0.325665874540913,0,0.163875090269313,0.486061930039393,0.268163623204797,0.286006499214085,0,0,0,0,0,0,0,0,0.107511441879825,0,0,0,0,0,0,0,0,0.0980757838043811,0,0.0469568706916304,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278466377096388,0,0.2440112939716,0.0696031033168343,0.247272523425973,0.0819907263755358,0.217211451419728,0,0,0,0,0.100453565299543,0,0.187573281223881,0.204884555489854,0.0806659819199616,0.0523528812100954,0.074598306112166,0.181102009199648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0828894264954325,0.180275890794066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0646640766951323,0.0914641362800683,0,0,0,0,0,0,0,0,0,0,0,0.293133511567635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0719044921483595,0,0.0843392403965415,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0738741926906438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.821967197020067,0,0,0,0,0,0,0,0,0.343983452296214,0.479461581789642,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0373124733443448,0,0,0,0,0,0,0.194445471641185,0.164449590503707,0.196699873644339,0.227221320980954,0,0.244374584202533,0,0.161464196262218,0,0,0.210244682285048,0.254801703227441,0.268031959483673,0.17208118264908,0.0826465040380816,0.190760324464606,0.0871588832444397,0.081359932135904,0,0.0978461107777356,0,0.0750453505157095,0.0745542549075041,0.0990244263857601,0.164199264373545,0,0.0476191773904887,0.141706336142815,0.14986111676545,0.112067779638927,0.128033729919821,0.131923786075207,0.092873634605593,0,0.0748964051866952,0.0678996586311492,0.135404897539632,0.101427320830301,0.18842684556126,0,0,0.0780974029773103,0,0.0625582350728301,0.0766064454112358,0.175981558593572,0.166685587652774,0.216063761676531,0,0,0
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225398799517185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0862481039219708,0,0.107200755467032,0,0,0,0,0,0,0,0.823791090100101,0.71866174498074,0.681511539650463,0,0.276299728348189,0,0,0,0.862822974498269,0.938738123701237,0,0.103807782330171,0.0829019901297716,0.516562855238017,0.274959667229359,0.135918568883708,0.222955214720375,0,0.322458878535173,0.214429664803005,0.116346380288332,1.20148316929498,1.11648716589158,1.17795936333761,0.325665874540913,0,0.163875090269313,0.486061930039393,0.268163623204797,0.286006499214085,0,0,0,0,0,0,0,0,0.107511441879825,0,0,0,0,0,0,0,0,0.0980757838043811,0,0.0469568706916304,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278466377096388,0,0.2440112939716,0.0696031033168343,0.247272523425973,0.0819907263755358,0.217211451419728,0,0,0,0,0.100453565299543,0,0.187573281223881,0.204884555489854,0.0806659819199616,0.0523528812100954,0.074598306112166,0.181102009199648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0828894264954325,0.180275890794066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0646640766951323,0.0914641362800683,0,0,0,0,0,0,0,0,0,0,0,0.293133511567635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0719044921483595,0,0.0843392403965415,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0738741926906438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.821967197020067,0,0,0,0,0,0,0,0,0.343983452296214,0.479461581789642,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0373124733443448,0,0,0,0,0,0,0.194445471641185,0.164449590503707,0.196699873644339,0.227221320980954,0,0.244374584202533,0,0.161464196262218,0,0,0.210244682285048,0.254801703227441,0.268031959483673,0.17208118264908,0.0826465040380816,0.190760324464606,0.0871588832444397,0.081359932135904,0,0.0978461107777356,0,0.0750453505157095,0.0745542549075041,0.0990244263857601,0.164199264373545,0,0.0476191773904887,0.141706336142815,0.14986111676545,0.112067779638927,0.128033729919821,0.131923786075207,0.092873634605593,0,0.0748964051866952,0.0678996586311492,0.135404897539632,0.101427320830301,0.18842684556126,0,0,0.0780974029773103,0,0.0625582350728301,0.0766064454112358,0.175981558593572,0.166685587652774,0.216063761676531,0,0,0
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000117!1.34e-17!23;CL:0000337!1.34e-17!23;CL:0002319!2.77e-10!43;CL:0000540!3.44e-10!33;CL:0000047!3.44e-10!33;CL:0000031!3.44e-10!33;CL:0000404!3.44e-10!33;CL:0000221!7.09e-10!44;CL:0000133!7.09e-10!44;CL:0000055!4.12e-08!49;CL:0000393!1.17e-07!39;CL:0000211!1.17e-07!39
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0001017!1.19e-17!73;UBERON:0001016!8.16e-17!75;UBERON:0004121!3.33e-16!95;UBERON:0000924!3.33e-16!95;UBERON:0006601!3.33e-16!95;UBERON:0002346!3.52e-16!64;UBERON:0003075!3.52e-16!64;UBERON:0007284!3.52e-16!64;UBERON:0000073!4.60e-16!54;UBERON:0002020!4.38e-15!34;UBERON:0001049!3.07e-14!52;UBERON:0005068!3.07e-14!52;UBERON:0006241!3.07e-14!52;UBERON:0007135!3.07e-14!52;UBERON:0003056!1.28e-13!49;UBERON:0010371!1.07e-12!73;UBERON:0000955!1.60e-10!47;UBERON:0006238!1.60e-10!47;UBERON:0003080!1.72e-10!40;UBERON:0003528!1.85e-10!29;UBERON:0002791!1.85e-10!29;UBERON:0001893!1.85e-10!29;UBERON:0002616!9.27e-10!46;UBERON:0002780!1.05e-09!39;UBERON:0001890!1.05e-09!39;UBERON:0006240!1.05e-09!39;UBERON:0010314!9.02e-08!92;UBERON:0002240!3.28e-07!6;UBERON:0005174!3.28e-07!6;UBERON:0001137!3.28e-07!6;UBERON:0001948!6.76e-07!5;UBERON:0002315!6.76e-07!5
}}
}}

Revision as of 20:04, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr4:107353346..107353375,-p5@Dmrtb1
Mm9::chr4:107353376..107353452,-p3@Dmrtb1
Mm9::chr4:107353455..107353476,-p8@Dmrtb1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
central nervous system1.19e-1773
nervous system8.16e-1775
ectoderm-derived structure3.33e-1695
ectoderm3.33e-1695
presumptive ectoderm3.33e-1695
neurectoderm3.52e-1664
neural plate3.52e-1664
presumptive neural plate3.52e-1664
regional part of nervous system4.60e-1654
gray matter4.38e-1534
neural tube3.07e-1452
neural rod3.07e-1452
future spinal cord3.07e-1452
neural keel3.07e-1452
pre-chordal neural plate1.28e-1349
ecto-epithelium1.07e-1273
brain1.60e-1047
future brain1.60e-1047
anterior neural tube1.72e-1040
brain grey matter1.85e-1029
regional part of telencephalon1.85e-1029
telencephalon1.85e-1029
regional part of brain9.27e-1046
regional part of forebrain1.05e-0939
forebrain1.05e-0939
future forebrain1.05e-0939
structure with developmental contribution from neural crest9.02e-0892
spinal cord3.28e-076
dorsal region element3.28e-076
dorsum3.28e-076
regional part of spinal cord6.76e-075
gray matter of spinal cord6.76e-075


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}