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MCL coexpression mm9:3394: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002107!2.82e-19!22;UBERON:0007499!2.82e-19!22;UBERON:0006925!2.82e-19!22;UBERON:0009497!2.82e-19!22;UBERON:0000015!2.82e-19!22;UBERON:0002423!2.82e-19!22;UBERON:0006235!2.82e-19!22;UBERON:0008835!2.82e-19!22;UBERON:0003894!2.82e-19!22;UBERON:0004161!2.82e-19!22;UBERON:0008836!2.82e-19!22;UBERON:0009854!3.25e-18!23;UBERON:0009856!3.25e-18!23;UBERON:0005172!2.39e-17!49;UBERON:0005173!2.39e-17!49;UBERON:0002417!2.39e-17!49;UBERON:0000916!2.39e-17!49;UBERON:0002365!2.40e-16!25;UBERON:0002330!2.40e-16!25;UBERON:0005256!7.55e-15!45;UBERON:0003104!2.77e-11!61;UBERON:0009142!2.77e-11!61;UBERON:0009569!6.20e-11!66;UBERON:0000466!9.67e-10!79;UBERON:0002368!1.77e-09!60;UBERON:0002369!8.30e-09!7;UBERON:0006858!8.30e-09!7;UBERON:0000473!1.57e-08!14;UBERON:0002530!2.90e-08!65;UBERON:0004176!5.08e-08!17;UBERON:0009196!5.08e-08!17;UBERON:0009117!5.08e-08!17;UBERON:0005177!5.76e-08!79;UBERON:0003135!8.03e-08!15;UBERON:0000991!1.91e-07!18;UBERON:0005564!1.91e-07!18;UBERON:0003101!3.33e-07!16;UBERON:0000079!3.33e-07!16;UBERON:0000949!7.19e-07!72
}}
}}

Revision as of 19:59, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr3:137953532..137953543,+p@chr3:137953532..137953543
+
Mm9::chr7:30124207..30124222,-p@chr7:30124207..30124222
-
Mm9::chr7:30124235..30124271,-p@chr7:30124235..30124271
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
liver2.82e-1922
epithelial sac2.82e-1922
digestive gland2.82e-1922
epithelium of foregut-midgut junction2.82e-1922
anatomical boundary2.82e-1922
hepatobiliary system2.82e-1922
foregut-midgut junction2.82e-1922
hepatic diverticulum2.82e-1922
liver primordium2.82e-1922
septum transversum2.82e-1922
liver bud2.82e-1922
digestive tract diverticulum3.25e-1823
sac3.25e-1823
abdomen element2.39e-1749
abdominal segment element2.39e-1749
abdominal segment of trunk2.39e-1749
abdomen2.39e-1749
exocrine gland2.40e-1625
exocrine system2.40e-1625
trunk mesenchyme7.55e-1545
mesenchyme2.77e-1161
entire embryonic mesenchyme2.77e-1161
subdivision of trunk6.20e-1166
immaterial anatomical entity9.67e-1079
endocrine gland1.77e-0960
adrenal gland8.30e-097
adrenal/interrenal gland8.30e-097
testis1.57e-0814
gland2.90e-0865
external genitalia5.08e-0817
indifferent external genitalia5.08e-0817
indifferent gonad5.08e-0817
trunk region element5.76e-0879
male reproductive organ8.03e-0815
gonad1.91e-0718
gonad primordium1.91e-0718
male organism3.33e-0716
male reproductive system3.33e-0716
endocrine system7.19e-0772


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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