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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.549888526793303,0,0,0.0274113153986516,0,0,0,0.00894088191935725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00109409042496,0.872271448918702,1.16620369569066,1.21556121399665,1.2086017834334,0.770564707993619,0,0,0,0,0,0,0,0,0,0,0.891745453111155,0,0.0601091194109999,0,0,0,0,0,0.0280174369961706,0.0296505276423286,0.0853979098344889,0,0,0.0068920264631218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0323689410134679,0.0978549673988937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0430998257964463,0.0546921007390138,0,0,0,0.0172519524778274,0,0,0,0.00471543339924245,0.0110270623656078,0.196086850610712,0,0.0768916894865238,0.141577155248067,0.145480126286698,0.117329114205416,0,0,0.00966346459710356,0,0.0537889152027763,0.327783284444535,0.356834418339174,0.436587560098904,0.44948185152704,0.742853664657271,1.06526677050649,1.12407046460876,1.15024666193968,1.10390829648088,0,0,0.0698195565427504,0.124551586467544,0.162380735288062,0.213614304529534,0.270960185457299,0.29508556019118,0.50764254227082,0.624005303874944,0.707020609877917,0.741114788680139,0.968421356327469,1.05533383658377,0.996611189075276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.054943952156948,0.160471000845822,0,0,0,0,0,0,0,0,0,0,0.0165567329075302,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0138869130110566,0.0206802640718777,0.0380775249537249,0.120876255993453,0.0914396424236868,0.098117166361508,0.00382370003935906,0.0692596073762737,0.0867364663220932,0.0742030789250108,0.0231883688044479,0.0614688988598567,0.0766073954291401,0.00606035419573715,0.054185647084509,0.087889087387772,0.0709519923534245,0.097232186784898,0.10713283498445,0.039830982107904,0.0678996586311492,0.0729583017401753,0.0584185836080433,0.100408792902042,0,0.0486884105045233,0.0408018333703219,0,0.0672533073738149,0.0282529650937994,0,0.126162431746818,0.0845301845292944,0,0.053774492989565,0.0452820579159438
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.549888526793303,0,0,0.0274113153986516,0,0,0,0.00894088191935725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00109409042496,0.872271448918702,1.16620369569066,1.21556121399665,1.2086017834334,0.770564707993619,0,0,0,0,0,0,0,0,0,0,0.891745453111155,0,0.0601091194109999,0,0,0,0,0,0.0280174369961706,0.0296505276423286,0.0853979098344889,0,0,0.0068920264631218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0323689410134679,0.0978549673988937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0430998257964463,0.0546921007390138,0,0,0,0.0172519524778274,0,0,0,0.00471543339924245,0.0110270623656078,0.196086850610712,0,0.0768916894865238,0.141577155248067,0.145480126286698,0.117329114205416,0,0,0.00966346459710356,0,0.0537889152027763,0.327783284444535,0.356834418339174,0.436587560098904,0.44948185152704,0.742853664657271,1.06526677050649,1.12407046460876,1.15024666193968,1.10390829648088,0,0,0.0698195565427504,0.124551586467544,0.162380735288062,0.213614304529534,0.270960185457299,0.29508556019118,0.50764254227082,0.624005303874944,0.707020609877917,0.741114788680139,0.968421356327469,1.05533383658377,0.996611189075276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.054943952156948,0.160471000845822,0,0,0,0,0,0,0,0,0,0,0.0165567329075302,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0138869130110566,0.0206802640718777,0.0380775249537249,0.120876255993453,0.0914396424236868,0.098117166361508,0.00382370003935906,0.0692596073762737,0.0867364663220932,0.0742030789250108,0.0231883688044479,0.0614688988598567,0.0766073954291401,0.00606035419573715,0.054185647084509,0.087889087387772,0.0709519923534245,0.097232186784898,0.10713283498445,0.039830982107904,0.0678996586311492,0.0729583017401753,0.0584185836080433,0.100408792902042,0,0.0486884105045233,0.0408018333703219,0,0.0672533073738149,0.0282529650937994,0,0.126162431746818,0.0845301845292944,0,0.053774492989565,0.0452820579159438
|gostat_on_MCL_coexpression=GO:0016491;oxidoreductase activity;0.0316660275023284;15233,76187,110265,13109,216454!GO:0016740;transferase activity;0.0316660275023284;102448,16150,14858,64697,22017,192136,223337!GO:0050093;methanol dehydrogenase activity;0.0316660275023284;76187!GO:0004411;homogentisate 1,2-dioxygenase activity;0.0316660275023284;15233!GO:0008119;thiopurine S-methyltransferase activity;0.0316660275023284;22017!GO:0004856;xylulokinase activity;0.0316660275023284;102448!GO:0008113;peptide-methionine-(S)-S-oxide reductase activity;0.0474574142287016;110265!GO:0005506;iron ion binding;0.0474574142287016;15233,76187,13109!GO:0047961;glycine N-acyltransferase activity;0.0474574142287016;64697!GO:0007252;I-kappaB phosphorylation;0.0474574142287016;16150!GO:0008384;IkappaB kinase activity;0.0474574142287016;16150!GO:0042732;D-xylose metabolic process;0.0474574142287016;102448!
|gostat_on_MCL_coexpression=GO:0016491;oxidoreductase activity;0.0316660275023284;15233,76187,110265,13109,216454!GO:0016740;transferase activity;0.0316660275023284;102448,16150,14858,64697,22017,192136,223337!GO:0050093;methanol dehydrogenase activity;0.0316660275023284;76187!GO:0004411;homogentisate 1,2-dioxygenase activity;0.0316660275023284;15233!GO:0008119;thiopurine S-methyltransferase activity;0.0316660275023284;22017!GO:0004856;xylulokinase activity;0.0316660275023284;102448!GO:0008113;peptide-methionine-(S)-S-oxide reductase activity;0.0474574142287016;110265!GO:0005506;iron ion binding;0.0474574142287016;15233,76187,13109!GO:0047961;glycine N-acyltransferase activity;0.0474574142287016;64697!GO:0007252;I-kappaB phosphorylation;0.0474574142287016;16150!GO:0008384;IkappaB kinase activity;0.0474574142287016;16150!GO:0042732;D-xylose metabolic process;0.0474574142287016;102448!
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0005172!2.68e-19!49;UBERON:0005173!2.68e-19!49;UBERON:0002417!2.68e-19!49;UBERON:0000916!2.68e-19!49;UBERON:0002107!1.25e-18!22;UBERON:0007499!1.25e-18!22;UBERON:0006925!1.25e-18!22;UBERON:0009497!1.25e-18!22;UBERON:0000015!1.25e-18!22;UBERON:0002423!1.25e-18!22;UBERON:0006235!1.25e-18!22;UBERON:0008835!1.25e-18!22;UBERON:0003894!1.25e-18!22;UBERON:0004161!1.25e-18!22;UBERON:0008836!1.25e-18!22;UBERON:0009854!1.61e-17!23;UBERON:0009856!1.61e-17!23;UBERON:0002365!1.41e-15!25;UBERON:0002330!1.41e-15!25;UBERON:0003104!2.98e-14!61;UBERON:0009142!2.98e-14!61;UBERON:0009569!1.35e-11!66;UBERON:0003914!2.15e-09!47;UBERON:0005256!4.00e-09!45;UBERON:0002113!4.68e-09!14;UBERON:0003918!4.68e-09!14;UBERON:0011143!4.68e-09!14;UBERON:0005095!4.68e-09!14;UBERON:0007687!4.68e-09!14;UBERON:0005177!4.32e-08!79
}}
}}

Revision as of 19:28, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:127303554..127303563,+p4@BC089597
Mm9::chr10:39744983..39745000,-p4@AI317395
Mm9::chr10:39745012..39745024,-p3@AI317395
Mm9::chr11:113570266..113570286,-p2@Cpsf4l
Mm9::chr13:17786563..17786620,-p1@5033411D12Rik
Mm9::chr13:23931270..23931311,+p2@Slc17a3
Mm9::chr13:34129460..34129474,+p2@Bphl
Mm9::chr13:47138485..47138555,-p1@Tpmt
Mm9::chr14:56194642..56194689,+p@chr14:56194642..56194689
+
Mm9::chr14:56194692..56194703,+p@chr14:56194692..56194703
+
Mm9::chr14:65059685..65059700,-p2@Msra
Mm9::chr15:9265320..9265378,+p1@Ugt3a2
Mm9::chr16:37580223..37580237,+p4@Hgd
Mm9::chr19:12770273..12770299,+p1@Keg1
Mm9::chr1:13650535..13650550,-p2@Lactb2
Mm9::chr1:13650557..13650635,-p1@Lactb2
Mm9::chr1:9538195..9538206,+p2@Adhfe1
Mm9::chr4:96330803..96330853,-p1@Cyp2j5
Mm9::chr6:3938967..3938987,-p@chr6:3938967..3938987
-
Mm9::chr7:126669716..126669732,+p3@Acsm5
Mm9::chr8:129965075..129965087,-p@chr8:129965075..129965087
-
Mm9::chr8:129965091..129965127,-p@chr8:129965091..129965127
-
Mm9::chr8:23804533..23804553,-p2@Ikbkb
Mm9::chr9:119266661..119266682,+p2@Xylb
Mm9::chr9:65478877..65478895,+p@chr9:65478877..65478895
+
Mm9::chr9:78194969..78194997,-p2@Gsta2


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0016491oxidoreductase activity0.0316660275023284
GO:0016740transferase activity0.0316660275023284
GO:0050093methanol dehydrogenase activity0.0316660275023284
GO:0004411homogentisate 1,2-dioxygenase activity0.0316660275023284
GO:0008119thiopurine S-methyltransferase activity0.0316660275023284
GO:0004856xylulokinase activity0.0316660275023284
GO:0008113peptide-methionine-(S)-S-oxide reductase activity0.0474574142287016
GO:0005506iron ion binding0.0474574142287016
GO:0047961glycine N-acyltransferase activity0.0474574142287016
GO:0007252I-kappaB phosphorylation0.0474574142287016
GO:0008384IkappaB kinase activity0.0474574142287016
GO:0042732D-xylose metabolic process0.0474574142287016



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
abdomen element2.68e-1949
abdominal segment element2.68e-1949
abdominal segment of trunk2.68e-1949
abdomen2.68e-1949
liver1.25e-1822
epithelial sac1.25e-1822
digestive gland1.25e-1822
epithelium of foregut-midgut junction1.25e-1822
anatomical boundary1.25e-1822
hepatobiliary system1.25e-1822
foregut-midgut junction1.25e-1822
hepatic diverticulum1.25e-1822
liver primordium1.25e-1822
septum transversum1.25e-1822
liver bud1.25e-1822
digestive tract diverticulum1.61e-1723
sac1.61e-1723
exocrine gland1.41e-1525
exocrine system1.41e-1525
mesenchyme2.98e-1461
entire embryonic mesenchyme2.98e-1461
subdivision of trunk1.35e-1166
epithelial tube2.15e-0947
trunk mesenchyme4.00e-0945
kidney4.68e-0914
kidney mesenchyme4.68e-0914
upper urinary tract4.68e-0914
kidney rudiment4.68e-0914
kidney field4.68e-0914
trunk region element4.32e-0879


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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