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MCL coexpression mm9:1996: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002107!5.96e-18!22;UBERON:0007499!5.96e-18!22;UBERON:0006925!5.96e-18!22;UBERON:0009497!5.96e-18!22;UBERON:0000015!5.96e-18!22;UBERON:0002423!5.96e-18!22;UBERON:0006235!5.96e-18!22;UBERON:0008835!5.96e-18!22;UBERON:0003894!5.96e-18!22;UBERON:0004161!5.96e-18!22;UBERON:0008836!5.96e-18!22;UBERON:0009854!7.59e-17!23;UBERON:0009856!7.59e-17!23;UBERON:0002365!6.54e-15!25;UBERON:0002330!6.54e-15!25;UBERON:0000160!3.69e-13!31;UBERON:0005409!1.22e-09!47;UBERON:0001007!1.99e-09!116;UBERON:0001555!1.99e-09!116;UBERON:0007026!1.99e-09!116;UBERON:0004921!4.05e-09!114;UBERON:0004119!5.00e-09!118;UBERON:0000925!5.00e-09!118;UBERON:0006595!5.00e-09!118
}}
}}

Revision as of 17:46, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:78313370..78313383,+p@chr11:78313370..78313383
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Mm9::chr14:18493480..18493494,+p2@Thrb
Mm9::chrX:39419706..39419717,+p@chrX:39419706..39419717
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Mm9::chrX:39419726..39419738,+p@chrX:39419726..39419738
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
liver5.96e-1822
epithelial sac5.96e-1822
digestive gland5.96e-1822
epithelium of foregut-midgut junction5.96e-1822
anatomical boundary5.96e-1822
hepatobiliary system5.96e-1822
foregut-midgut junction5.96e-1822
hepatic diverticulum5.96e-1822
liver primordium5.96e-1822
septum transversum5.96e-1822
liver bud5.96e-1822
digestive tract diverticulum7.59e-1723
sac7.59e-1723
exocrine gland6.54e-1525
exocrine system6.54e-1525
intestine3.69e-1331
gastrointestinal system1.22e-0947
digestive system1.99e-09116
digestive tract1.99e-09116
primitive gut1.99e-09116
subdivision of digestive tract4.05e-09114
endoderm-derived structure5.00e-09118
endoderm5.00e-09118
presumptive endoderm5.00e-09118


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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