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MCL coexpression mm9:1263: Difference between revisions

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|gostat_on_MCL_coexpression=GO:0045777;positive regulation of blood pressure;0.0289188274977755;18430!
|gostat_on_MCL_coexpression=GO:0045777;positive regulation of blood pressure;0.0289188274977755;18430!
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0003064!2.10e-17!14;UBERON:0002369!2.48e-13!7;UBERON:0006858!2.48e-13!7;UBERON:0005156!1.12e-12!26;UBERON:0000990!1.12e-12!26;UBERON:0003133!3.98e-12!24;UBERON:0003135!1.71e-10!15;UBERON:0003101!1.08e-09!16;UBERON:0000079!1.08e-09!16;UBERON:0004175!4.57e-09!9;UBERON:0000473!4.70e-09!14;UBERON:0004176!5.02e-09!17;UBERON:0009196!5.02e-09!17;UBERON:0009117!5.02e-09!17;UBERON:0000991!2.13e-08!18;UBERON:0005564!2.13e-08!18;UBERON:0003100!6.82e-08!11;UBERON:0000080!2.26e-07!4;UBERON:0005904!2.26e-07!4;UBERON:0006947!2.26e-07!4;UBERON:0002120!2.26e-07!4;UBERON:0004054!2.26e-07!4;UBERON:0004875!2.26e-07!4;UBERON:0004876!2.26e-07!4;UBERON:0005721!2.26e-07!4;UBERON:0005754!2.26e-07!4;UBERON:0007297!2.26e-07!4
}}
}}

Revision as of 16:36, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:100414653..100414657,+p@chr11:100414653..100414657
+
Mm9::chr11:100415313..100415332,+p@chr11:100415313..100415332
+
Mm9::chr6:112425748..112425753,-p@chr6:112425748..112425753
-
Mm9::chr6:112440780..112440797,-p4@Oxtr
Mm9::chr6:112440798..112440823,-p2@Oxtr
Mm9::chr6:112440825..112440838,-p1@Oxtr


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0045777positive regulation of blood pressure0.0289188274977755



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
intermediate mesoderm2.10e-1714
adrenal gland2.48e-137
adrenal/interrenal gland2.48e-137
reproductive structure1.12e-1226
reproductive system1.12e-1226
reproductive organ3.98e-1224
male reproductive organ1.71e-1015
male organism1.08e-0916
male reproductive system1.08e-0916
internal genitalia4.57e-099
testis4.70e-0914
external genitalia5.02e-0917
indifferent external genitalia5.02e-0917
indifferent gonad5.02e-0917
gonad2.13e-0818
gonad primordium2.13e-0818
female organism6.82e-0811
mesonephros2.26e-074
duct of male reproductive system2.26e-074
male genital duct2.26e-074
pronephros2.26e-074
internal male genitalia2.26e-074
nephrogenic cord2.26e-074
urogenital ridge2.26e-074
pronephric mesoderm2.26e-074
rostral part of nephrogenic cord2.26e-074
presumptive pronephric mesoderm2.26e-074


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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