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MacroAPE 1083:Motif GGNATC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;0;14368;0!02;0;0;14368;0!03;3592;3592;3592;3592!04;14368;0;0;0!05;0;0;0;14368!06;0;14368;0;0 |macroape_1083_sample_pvalues=11376-118A8;0...")
 
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-129A6;0.117421!10809-111A8;0.18308!10597-108E3;0.964941!10717-109I6;0.283572!10455-106G5;0.797123!10534-107G3;0.0604785!10429-106D6;0.135812!10464-106H5;0.0344192!10827-111C8;0.0830527!10789-110H6;0.0999134!10828-111C9;0.115477!10788-110H5;0.0472828!10792-110H9;0.137374!10765-110E9;0.0238708!10829-111D1;0.0371791!10830-111D2;0.0609893!10831-111D3;0.145624!10832-111D4;0.171314!10833-111D5;0.0855298!10764-110E8;0.105924!10770-110F5;0.159427!10399-106A3;0.0852149!10400-106A4;0.250666!10405-106A9;0.187343!10834-111D6;0.198072!10835-111D7;0.0673344!10836-111D8;0.182097!10837-111D9;0.0643029!10699-109G6;0.193525!10802-111A1;0.0834131!10796-110I4;0.263008!10010-101C1;0.977362!10810-111A9;0.224125!10421-106C7;0.64257!10708-109H6;0.188862!12235-129G3;0.86083!12236-129G4;0.314197!12237-129G5;0.628523!10167-103B5;0.448268!10151-102I7;0.878485!10428-106D5;0.896883!10795-110I3;0.54079!10805-111A4;0.248426!10052-101G7;0.988234!10189-103D9;0.224437!10589-108D4;0.423192!10425-106D2;0.138064!10427-106D4;0.591237!10702-109G9;0.0407625!10432-106D9;0.204543!10496-107C1;0.787762!10718-109I7;0.347354!10011-101C2;0.163248!10053-101G8;0.08399!10686-109F2;0.0734594!10084-102B3;0.067707!10012-101C3;0.959285!10085-102B4;0.964911!10482-107A5;0.614488!10419-106C5;0.503813!10080-102A8;0.447397!10760-110E4;0.232978!10709-109H7;0.590827!10710-109H8;0.898643!10703-109H1;0.539346!10719-109I8;0.189669!10642-109A3;0.228034!10177-103C6;0.466896!10164-103B2;0.835461!10173-103C2;0.88532!10166-103B4;0.609107!10083-102B2;0.866107!10188-103D8;0.753275!10552-107I3;0.96708!10553-107I4;0.395461!10013-101C4;0.761769!10536-107G5;0.0508542!10618-108G6;0.391408!10423-106C9;0.722949!10785-110H2;0.92898!12238-129G6;0.783817!12239-129G7;0.0175215!12240-129G8;0.00689544!10416-106C2;0.00781089!10801-110I9;0.00393151!10766-110F1;0.428714!10824-111C5;0.249851!10825-111C6;0.238511!10826-111C7;0.26138!10454-106G4;0.302292!10409-106B4;0.214502!10638-108I8;0.17845!10636-108I6;0.810283!10513-107D9;0.524857!10420-106C6;0.755003!10082-102B1;0.269062!10014-101C5;0.364054!10070-101I7;0.157171!10452-106G2;0.640263!10453-106G3;0.415038!10449-106F8;0.391022!10042-101F6;0.381404!10069-101I6;0.985814!10193-103E4;0.232903!10631-108I1;0.733466!10438-106E6;0.0398387!10488-107B2;0.625327!10196-103E7;0.891609!10071-101I8;0.21182!10071-101I8;0.37239!10041-101F5;0.640246!10451-106G1;0.178368!10450-106F9;0.351181!10604-108F1;0.380939!10605-108F2;0.932587!10606-108F3;0.985557!10603-108E9;0.989399!10497-107C2;0.781014!10448-106F7;0.823246!10643-109A4;0.217864!10426-106D3;0.727707!10431-106D8;0.838415!10197-103E8;0.746652!10443-106F2;0.14141!10815-111B5;0.899845!10816-111B6;0.329321!10817-111B7;0.371627!10015-101C6;0.36243!10410-106B5;0.0934684!10054-101G9;0.859244!10758-110E2;0.607103!10711-109H9;0.799545!10040-101F4;0.534194!10470-106I2;0.933891!10415-106C1;0.512209!10198-103E9;0.878703!10614-108G2;0.105333!10612-108F9;0.86986!10549-107H9;0.414987!10615-108G3;0.358396!10487-107B1;0.30828!10433-106E1;0.791203!10688-109F4;0.537082!10444-106F3;0.742923!10444-106F3;0.306789!10485-107A8;0.272711!10413-106B8;0.381118!10175-103C4;0.824441!10161-103A8;0.861841!12131-128D7;0.936534!10624-108H3;0.588475!10712-109I1;0.627274!10205-103F7;0.201016!10206-103F8;0.201736!10207-103F9;0.215856!10050-101G5;0.177665!10051-101G6;0.0863846!10016-101C7;0.120589!10046-101G1;0.199222!10778-110G4;0.180086!10633-108I3;0.185381!10818-111B8;0.416643!10819-111B9;0.72978!10820-111C1;0.757699!10484-107A7;0.779158!10808-111A7;0.992159!10169-103B7;0.0662779!10153-102I9;0.91595!13425-144D5;0.899818!13433-144E4;0.566811!13437-144E8;0.673023!11904-125F5;0.502129!11905-125F6;0.450906!10039-101F3;0.887418!10791-110H8;0.99552!10017-101C8;0.999238!10045-101F9;0.195368!10509-107D5;0.105633!10839-111E2;0.869157!10692-109F8;0.49587!10079-102A7;0.624833!10078-102A6;0.185779!10721-110A1;0.214281!10569-108B2;0.854328!10570-108B3;0.0401446!10571-108B4;0.227311!10647-109A8;0.0500539!10752-110D5;0.663565!10782-110G8;0.354026!10726-110A6;0.74359!10018-101C9;0.640716!10086-102B5;0.304325!10182-103D2;0.498013!10165-103B3;0.972021!10499-107C4;0.857993!10408-106B3;0.396058!10019-101D1;0.734376!10068-101I5;0.127371!10075-102A3;0.178777!10077-102A5;0.2785!10727-110A7;0.68625!10775-110G1;0.191306!10412-106B7;0.0340576!12231-129F8;0.484019!12232-129F9;0.243102!12233-129G1;0.303343!12234-129G2;0.445897!10414-106B9;0.792929!10170-103B8;0.492555!10183-103D3;0.872495!10150-102I6;0.921972!10174-103C3;0.971097!10155-103A2;0.956845!10038-101F2;0.938014!10838-111E1;0.917166!10759-110E3;0.735564!10514-107E1;0.753437!10465-106H6;0.861135!10691-109F7;0.795614!10843-111E6;0.0766967!10844-111E7;0.131705!11747-123G1;0.357537!11748-123G2;0.0762697!11749-123G3;0.098027!11750-123G4;0.0418023!11751-123G5;0.0998667!11840-124H4;0.143137!11752-123G6;0.100144!11753-123G7;0.0988442!11754-123G8;0.0336332!11755-123G9;0.00792386!11756-123H1;0.0212385!11833-124G6;0.108544!11760-123H5;0.470462!11836-124G9;0.0354691!11758-123H3;0.0101504!11835-124G8;0.0542994!11762-123H7;0.0672294!11838-124H2;0.0478061!11757-123H2;0.108308!11759-123H4;0.118356!11761-123H6;0.0600703!11842-124H6;0.133455!11837-124H1;0.164829!10568-108B1;0.0377271!13230-141I8;0.255928!13231-141I9;0.278139!10696-109G3;0.195419!10493-107B7;0.303327!10494-107B8;0.867534!10850-111F4;0.587301!10851-111F5;0.771079!10852-111F6;0.696768!10853-111F7;0.985377!10854-111F8;0.503151!10855-111F9;0.172664!10856-111G1;0.850369!10847-111F1;0.512959!10846-111E9;0.935133!10848-111F2;0.420676!10845-111E8;0.537839!10857-111G2;0.710661!10858-111G3;0.726296!10156-103A3;0.471289!11901-125F2;0.981001!11902-125F3;0.104405!11903-125F4;0.0720996!10689-109F5;0.103495!10648-109A9;0.829533!10784-110H1;0.692543!10744-110C6;0.913912!10772-110F7;0.607796!10474-106I6;0.10068!10600-108E6;0.126608!10684-109E9;0.952772!12226-129F3;0.913253!12227-129F4;0.912924!10508-107D4;0.557339!10539-107G8;0.0779072!10607-108F4;0.213539!10555-107I6;0.10851!10774-110F9;0.0927711!10637-108I7;0.333063!10663-109C6;0.223723!10728-110A8;0.26238!10729-110A9;0.412769!10430-106D7;0.111091!10730-110B1;0.0919069!10813-111B3;0.0419506!10812-111B2;0.0374278!10037-101F1;0.0169048!10172-103C1;0.992726!10163-103B1;0.77195!10076-102A4;0.992321!10073-102A1;0.8814!10036-101E9;0.500554!10195-103E6;0.964532!10277-104E7;0.915601!10434-106E2;0.952936!10550-107I1;0.556614!10545-107H5;0.578656!10544-107H4;0.972075!10704-109H2;0.924192!10510-107D6;0.295671!10558-107I9;0.534171!10020-101D2;0.681016!10732-110B3;0.108051!10049-101G4;0.838449!10698-109G5;0.899823!10437-106E5;0.74149!10417-106C3;0.649799!10035-101E8;0.778788!10171-103B9;0.97352!10157-103A4;0.963424!10034-101E7;0.887849!10072-101I9;0.99027!10199-103F1;0.511358!10200-103F2;0.963363!10697-109G4;0.184261!10723-110A3;0.617495!10179-103C8;0.559994!10160-103A7;0.91254!10180-103C9;0.833677!10162-103A9;0.47275!10021-101D3;0.416371!10840-111E3;0.00085039!10706-109H4;0.0550773!10033-101E6;0.847168!10032-101E5;0.905415!10490-107B4;0.981229!10439-106E7;0.650006!10022-101D4;0.872783!10176-103C5;0.132386!10469-106I1;0.903565!10067-101I4;0.789646!10411-106B6;0.476065!10471-106I3;0.839365!10030-101E3;0.846868!10475-106I7;0.472639!10787-110H4;0.274037!10477-106I9;0.718282!10695-109G2;0.704906!11771-123I7;0.0011153!11772-123I8;0.531378!11773-123I9;0.537751!10093-102C3;0.284472!10442-106F1;0.850743!10442-106F1;0.636787!10201-103F3;0.568503!10639-108I9;0.185793!11843-124H7;0.836025!11841-124H5;0.971411!10693-109F9;0.813909!10436-106E4;0.80766!10483-107A6;0.559997!10282-104F3;0.571096!10023-101D5;0.664196!10066-101I3;0.274786!10065-101I2;0.146833!10800-110I8;0.212263!10610-108F7;0.249564!10841-111E4;0.35646!10541-107H1;0.566098!10842-111E5;0.291137!10562-108A4;0.27395!10024-101D6;0.42411!10064-101I1;0.295022!10609-108F6;0.432405!10048-101G3;0.265733!10781-110G7;0.0434589!10181-103D1;0.0354097!10159-103A6;0.96727!10056-101H2;0.841863!10737-110B8;0.843167!10025-101D7;0.292115!10044-101F8;0.398535!10424-106D1;0.205848!10463-106H4;0.178657!10616-108G4;0.646337!10486-107A9;0.99704!10062-101H8;0.488562!10202-103F4;0.213037!10158-103A5;0.759411!10441-106E9;0.8507!10031-101E4;0.667328!10063-101H9;0.95571!10063-101H9;0.516433!11763-123H8;0.427523!11765-123I1;0.129578!11768-123I4;0.0421891!10807-111A6;0.145738!10790-110H7;0.803489!10798-110I6;0.319631!10786-110H3;0.822533!10591-108D6;0.803804!10593-108D8;0.786223!10590-108D5;0.8432!10026-101D8;0.352818!10096-102C6;0.0508094!10168-103B6;0.730977!10154-103A1;0.83078!10209-103G2;0.888227!10061-101H7;0.318831!10027-101D9;0.266567!10043-101F7;0.0901481!10783-110G9;0.407711!10028-101E1;0.694408!10060-101H6;0.394195!10203-103F5;0.203905!10059-101H5;0.26321!10047-101G2;0.355199!10029-101E2;0.515196!10058-101H4;0.242021!10418-106C4;0.371991!10492-107B6;0.75781!10694-109G1;0.827037!10797-110I5;0.000630856!10057-101H3;0.857203!10100-102D1;0.123456!10055-101H1;0.051221!10204-103F6;0.223429!10191-103E2;0.121211!10563-108A5;0.459605
|name=motif_GGNATC
|name=motif_GGNATC
|tomtom_result=NFKB1#MA0105.1;2;0.0030241;1.43947;1;6;GGAATC;GGGGAATCCCC;-!che-1#MA0260.1;0;0.0128925;6.13682;1;6;GGAATC;GGTTTC;-!Spz1#MA0111.1;2;0.0177916;8.46882;1;6;GGAATC;AGGGTAACAGC;+!so#MA0246.1;-1;0.018041;8.58752;1;5;GGAATC;GTATCA;-!Gata1#MA0035.1;-1;0.0202656;9.6464;1;5;GGAATC;CCATCC;-
}}
}}

Latest revision as of 12:31, 7 September 2012

Full Name: motif_GGNATC

Motif matrix
POACGT
0100143680
0200143680
033592359235923592
0414368000
0500014368
0601436800

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
NFKB1#MA0105.120.00302411.4394716GGAATCGGGGAATCCCC-
che-1#MA0260.100.01289256.1368216GGAATCGGTTTC-
Spz1#MA0111.120.01779168.4688216GGAATCAGGGTAACAGC+
so#MA0246.1-10.0180418.5875215GGAATCGTATCA-
Gata1#MA0035.1-10.02026569.646415GGAATCCCATCC-
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