Coexpression cluster:C3393: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 5: | Line 5: | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0007023!2.60e-44!115;UBERON:0001049!1.37e-41!57;UBERON:0005068!1.37e-41!57;UBERON:0006241!1.37e-41!57;UBERON:0007135!1.37e-41!57;UBERON:0003075!6.06e-41!86;UBERON:0007284!6.06e-41!86;UBERON:0005743!6.56e-41!86;UBERON:0002346!2.45e-39!90;UBERON:0000073!7.41e-38!94;UBERON:0001016!7.41e-38!94;UBERON:0001017!1.10e-37!82;UBERON:0002616!1.25e-37!59;UBERON:0000955!2.23e-35!69;UBERON:0006238!2.23e-35!69;UBERON:0003056!6.87e-34!61;UBERON:0003080!1.52e-33!42;UBERON:0002780!7.40e-33!41;UBERON:0001890!7.40e-33!41;UBERON:0006240!7.40e-33!41;UBERON:0002020!7.39e-27!34;UBERON:0003528!7.39e-27!34;UBERON:0001893!1.22e-26!34;UBERON:0002791!9.69e-26!33;UBERON:0001869!5.87e-25!32;UBERON:0000153!1.07e-23!129;UBERON:0007811!1.07e-23!129;UBERON:0000033!1.75e-23!123;UBERON:0004121!5.37e-23!169;UBERON:0000924!1.38e-22!173;UBERON:0006601!1.38e-22!173;UBERON:0002619!4.71e-22!22;UBERON:0001950!1.27e-20!20;UBERON:0000064!1.68e-18!219;UBERON:0000956!2.56e-18!25;UBERON:0000203!2.56e-18!25;UBERON:0000483!1.27e-16!309;UBERON:0000119!4.43e-16!312;UBERON:0000025!2.09e-15!194;UBERON:0000481!3.33e-15!347;UBERON:0000475!2.33e-12!365;UBERON:0000062!2.66e-11!511;UBERON:0004111!8.56e-11!241;UBERON:0002308!3.69e-10!9;UBERON:0000125!3.69e-10!9;UBERON:0000477!3.93e-10!286;UBERON:0000922!4.45e-10!612;UBERON:0002420!1.42e-09!9;UBERON:0007245!1.42e-09!9;UBERON:0010009!1.42e-09!9;UBERON:0010011!1.42e-09!9;UBERON:0000454!1.42e-09!9;UBERON:0003076!3.43e-09!15;UBERON:0003057!3.43e-09!15;UBERON:0000468!4.24e-09!659;UBERON:0002298!7.85e-09!8;UBERON:0002050!7.91e-09!605;UBERON:0005423!7.91e-09!605;UBERON:0001871!1.21e-08!7;UBERON:0000923!1.44e-08!604;UBERON:0005291!1.44e-08!604;UBERON:0006598!1.44e-08!604;UBERON:0002532!1.44e-08!604;UBERON:0009663!3.57e-08!7;UBERON:0001894!1.27e-07!7;UBERON:0006222!1.27e-07!7;UBERON:0004732!1.58e-07!13;UBERON:0000200!2.86e-07!6;UBERON:0000063!5.25e-07!97 | |ontology_enrichment_uberon=UBERON:0007023!2.60e-44!115;UBERON:0001049!1.37e-41!57;UBERON:0005068!1.37e-41!57;UBERON:0006241!1.37e-41!57;UBERON:0007135!1.37e-41!57;UBERON:0003075!6.06e-41!86;UBERON:0007284!6.06e-41!86;UBERON:0005743!6.56e-41!86;UBERON:0002346!2.45e-39!90;UBERON:0000073!7.41e-38!94;UBERON:0001016!7.41e-38!94;UBERON:0001017!1.10e-37!82;UBERON:0002616!1.25e-37!59;UBERON:0000955!2.23e-35!69;UBERON:0006238!2.23e-35!69;UBERON:0003056!6.87e-34!61;UBERON:0003080!1.52e-33!42;UBERON:0002780!7.40e-33!41;UBERON:0001890!7.40e-33!41;UBERON:0006240!7.40e-33!41;UBERON:0002020!7.39e-27!34;UBERON:0003528!7.39e-27!34;UBERON:0001893!1.22e-26!34;UBERON:0002791!9.69e-26!33;UBERON:0001869!5.87e-25!32;UBERON:0000153!1.07e-23!129;UBERON:0007811!1.07e-23!129;UBERON:0000033!1.75e-23!123;UBERON:0004121!5.37e-23!169;UBERON:0000924!1.38e-22!173;UBERON:0006601!1.38e-22!173;UBERON:0002619!4.71e-22!22;UBERON:0001950!1.27e-20!20;UBERON:0000064!1.68e-18!219;UBERON:0000956!2.56e-18!25;UBERON:0000203!2.56e-18!25;UBERON:0000483!1.27e-16!309;UBERON:0000119!4.43e-16!312;UBERON:0000025!2.09e-15!194;UBERON:0000481!3.33e-15!347;UBERON:0000475!2.33e-12!365;UBERON:0000062!2.66e-11!511;UBERON:0004111!8.56e-11!241;UBERON:0002308!3.69e-10!9;UBERON:0000125!3.69e-10!9;UBERON:0000477!3.93e-10!286;UBERON:0000922!4.45e-10!612;UBERON:0002420!1.42e-09!9;UBERON:0007245!1.42e-09!9;UBERON:0010009!1.42e-09!9;UBERON:0010011!1.42e-09!9;UBERON:0000454!1.42e-09!9;UBERON:0003076!3.43e-09!15;UBERON:0003057!3.43e-09!15;UBERON:0000468!4.24e-09!659;UBERON:0002298!7.85e-09!8;UBERON:0002050!7.91e-09!605;UBERON:0005423!7.91e-09!605;UBERON:0001871!1.21e-08!7;UBERON:0000923!1.44e-08!604;UBERON:0005291!1.44e-08!604;UBERON:0006598!1.44e-08!604;UBERON:0002532!1.44e-08!604;UBERON:0009663!3.57e-08!7;UBERON:0001894!1.27e-07!7;UBERON:0006222!1.27e-07!7;UBERON:0004732!1.58e-07!13;UBERON:0000200!2.86e-07!6;UBERON:0000063!5.25e-07!97 | ||
|tf_chipseq_enrich=FOXA2#3170;2:16.4203091684435:0.00481068235210548:0.0225818173478154!TRIM28#10155;3:18.5905250452625:0.000155596929725528:0.00196688304812447!USF1#7391;3:6.36149927720796:0.0038840405729056:0.0189846638926236 | |||
|tfbs_overrepresentation=0.147255,3.52041e-05,0.716932,0.00115693,0.199763,0.000422139,0.0430074,0.414564,0.03272,0.0257057,0.139423,0.225367,0.188771,0.125978,0.148679,0.0619003,0.140982,0.0982016,2.56193e-05,0.108057,0.188635,0.132577,0.081977,0.0948982,0.0415721,0.215492,0.0236364,0.00424558,0.143747,0.0933697,0.204953,0.114046,0.0180314,0.208242,0.0665252,0.0844722,0.688181,0.000936648,0.120351,0.0667043,0.0964797,0.0246116,0.140039,0.184019,0.120917,0.0362416,0.0380166,0.18151,0.111283,0.121201,0.154071,0.0541794,0.0701653,0.0929951,0.00153794,0.0384161,0.107455,0.00190755,0.0783235,0.000212944,0.0294301,2.51181e-05,6.64006e-06,0.0759481,0.054569,0.0504887,0.00104991,0.0600088,0.0860723,4.42987e-08,0.0831028,5.4424e-05,0.089036,0.000311415,0.00747605,0.0171177,0.0964936,0.0436945,0.0372495,0.00725252,0.0956287,0.0279481,0.0425,0.114846,0.291327,0.251834,0.064341,0.209032,0.0693924,0.062747,0.0857568,0.0495878,0.0953825,0.0473737,0.0853887,0.115028,0.58489,0.153631,0.000142889,0.27413,0.0574857,0.276221,0.141874,0.0370665,0.219088,0.0409286,0.0669887,0.338096,0.144217,0.0400492,0.182599,0.0339971,0.149552,0.0176855,0.005305,0.000576135,0.0203386,0.0566549,0.000499822,0.0838393,0.01474,0.214708,0.140123,0.0857827,0.102368,0.0166632,3.15443e-06,0.0147934,0.0843604,0.134932,0.0595773,0.0748346,0.0572164,0.0227861,0.125792,0.108101,0.0648644,0.0553359,0.0330399,0.00395526,0.022776,3.52681e-07,0.00166778,2.85883e-08,0.596561,0.0693171,0.0988228,0.0842275,0.0389418,2.39098e-14,0.0216297,0.000553889,0.00113738,0.0265818,0.0427088,0.117549,0.0747594,0.0283286,0.0516985,0.0337251,0.0281563,0.0952829,0.000289805,0.000604898,0.273479,0.114283,0.0400322,0.127369,0.0403542,4.47691e-05,0.179689,0.137725,0.12972,0.0541353,0.0799324,0.090079,0.140334,0.181817,0.178449,0.0356339,0.158844,0.122474,0.0274061,0.00695194,0.00278703,0.118847,0.183031,0.0401756,0.0828697,0.0160177,0.107145,0.187297,0.122935,0.0284396,0.112671,0.00112574,0.0782523,0.0602859,0.0676496,0.109673,0.0893019,0.060398,0.0308319,0.0606036,0.000471598,0.259411,0.0042906,0.15185,0.206299,0.178359,0.0458667,0.104357,0.0076549,0.1129,0.0549274,0.0151713,0.164202,0.100942,0.062995,0.10299,0.14193,0.0800546,0.15606,0.161026,0.0738599,0.126611,0.138852,0.085973,0.060453,0.059896,0.0538541,0.384785,0.0418404,0.0765029,0.0959204,0.0931946,0.0472272,0.263087,0.000830039,0.214803,0.0177645,0.00958651,0.0983991,0.0830921,0.00703932,0.136838,0.0815104,0.111647,0.0119747,0.117027,0.159052,0.0183114,0.185743,0.0980288,0.0980899,0.159674,0.107242,0.201859,0.0024791,0.582402,0.0619218,0.1751,0.163376,0.128096,0.0345133,0.0810678,0.0811639,0.0920653,0.118078,0.0755168,0.278352,0.00204659,0.003405,0.00320178,0.00386209,0.0380459,0.130174,0.584917,0.713218,0.782949,0.0821962,0.0101922,0.0986134,0.807281,0.0083957,9.35433e-09,0.261553,0.446302,0.000126821,0.309233,0.0313047,4.13079e-06,0.0018019,0.329568,0.178727,0.0164332,0.271958,0.00531795,0.000206884,0.0148713,0.217139,0.0139202,0.187251,0.0109219,5.74374e-05,0.00249167,0.00628346,0.330894,0.0257868,0.0190732,0.0124294,0.025356,0.000737505,0.528324,1.21859e-05,0.0117562,0.101703,0.142924,0.253571,0.276829,0.00591608,0.481778,0.316882,0.223503,8.97596e-05,0.603208,0.0447111,0.314747,0.21363,0.291709,0.120054,0.576651,0.102333,0.292835,0.137839,0.439556,0.0807167,3.52276e-06,0.241757,0.18237,0.126021,0.248484,0.0133926,0.275351,0.236471,0.185661,0.00934251,0.535598,0.0405716,0.000544819,0.503058,0.513852,9.26503e-08,0.248634,0.281576,0.000524881,0.0141151,0.0670502,0.0730934,0.184794,0.00243366,0.421596,3.67265e-07,0.412837,0.0267008,0.00875805,0.551561,0.0225539,0.218623,0.0550136,0.117923,0.0451077,0.0747529,0.229003,0.650179,0.061213,0.50215,0.0054714,0.00907354,0.477304,0.289204,0.327108,0.109738,0.278044,0.229008,0.0193295,0.228096,0.00847033,0.19763,0.0129079,0.0106166,0.421464,6.49276e-05,0.420626,0.516462,0.858756,0.000835902,0.144809,0.145539,0.385517,0.376191,0.0224279,2.0263e-08,0.252232,0.152681,0.0465712,0.137098,0.0369524,0.134788,0.0985856,0.0460163,0.293698,0.284593,0.343734,0.00055939,0.305777,0.06617,7.63932e-07,0.00696513,0.284629,0.262537,0.010587,0.226257,0.016014,0.41707,0.0110128,1.42726e-09,0.753577,0.206222,0.525396,0.284166,0.437176,0.269226,0.339277,0.192529,0.000382139,0.141758,0.455379,0.000974263,0.159617,0.238587,9.51685e-06,0.00252695,0.0192138,0.00409641,0.0595618,0.524997,0.0769581,0.00943126,0.539392,8.63298e-05,5.22751e-06,0.0158269,0.000670954,9.88726e-06,0.316179,0.0697683,0.0556835,0.192544,8.39939e-05,0.0575676,0.144322,0.223391,4.2235e-06,0.0216577,0.0214618,0.191777,0.111931,1.64711e-06,0.0435386,0.303336,0.000372475,0.134852,0.10689,0.273326,0.0627924,0.381386,0.0179103,0.303939,0.279795,0.390395,0.0464827,0.169603,0.114583,0.104559,0.0899537,0.0866966,0.15983,0.0059529,0.0438639,0.00389058,0.123593,0.129156,0.210369,0.0200986,0.346372,0.0499762,0.0828956,0.0666953,2.31993e-06,0.111277,0.219383,0.00817962,7.86053e-05,0.00915124,0.188694,0.0481795,0.199971,0.016022,0.127758,0.175785,0.0012141,0.169234,0.0876426,0.0952322,0.0112557,0.00220026,0.107043,0.275244,0.00481323,0.173708,0.141119,0.211595,0.0300692,0.131551,0.0445237,0.052362,0.208866,0.0123828,0.0797897,0.0974211,0.000777797,0.00796449,0.0906475,0.0558058,0.00477066,0.166024,0.009894,0.0145999,0.0656973,0.211746,0.026334,0.0801488,0.0757897,0.161801,0.193215,0.0549034,8.39064e-05,0.00160873,0.0417636,0.0345419,0.0388736,0.254674,0.170307,0.0217163,0.0488949,0.174921,0.0791124,0.0330727,0.348757,0.219556,0.0394698,3.70228e-05,0.0178982,0.122476,0.108872,0.11002,0.26144,0.0286025,0.549354,0.144567,0.038848,0.0874516,0.0550279,0.144067,0.00335855,0.0254773,0.190048,0.131088,0.394069,0.237101,0.286988,0.0761239,0.172491,0.0818785,0.182701,0.0637246,0.147698,0.141463,0.167267,0.140622,0.0889592,0.309588,0.28711,0.0473033,0.094881,0.118532,0.132886,0.0774373,0.109194,0.128564,0.00904548,0.112518,0.0226843,2.41547e-05,0.0993999,0.00127324,0.061829,0.0755121,0.0936516,0.144075,0.0340203,0.0741807,0.0425274,0.739716,0.655293,0.0255266,0.289306,0.00740669,0.192475,0.00108376,0.0088427,0.057571,0.00115086,0.00174134,0.0608699,0.175319,0.300597,0.0713214,0.00224624,3.01989e-05,0.0355833,3.24692e-07,0.175094,0.911304,0.936279,0.206454,0.0257531,0.108277,0.0673484,0.108748,0.0494066,0.0958493,0.205732,0.0755808,0.045654,0.110216,0.070276,0.226171,0.0124298,0.0376916,0.13262,0.0450031,2.72191e-05,0.114242,0.0929549,1.72873e-06,0.00020908,0.221645,0.057168,0.234298,0.0759837,0.286863,0.152372,0.194941,0.0257725,0.101607,0.327067,0.172982,0.0661495,0.151597,0.0626744,0.191335,0.148574,0.504592,0.155821,0.00264837,0.0919008,0.0602373,6.72848e-07,0.15063,0.0973823,0.15503,0.000943322,0.00141547,0.000479913,0.228144,0.251466,0.0050797,0.00738316,0.00362128,0.00806892,0.113145,7.72788e-06,0.186638,0.174776,0.0948451,0.0384217,0.249049,0.140533,0.000178916,0.00352872,0.103667,0.113069,0.025556,1.50087e-06,0.09066,0.585505,0.000886556,0.188651,0.0813902,0.184948,0.156261,0.0546539,0.0362615,0.0590944,0.247324,0.178389,0.0020701,0.00248603,0.407281,0.252227,0.0360851,0.0998546,0.131093,0.0434602,0.133616,0.0177337,0.36927,0.0227305,0.407369,0.231447,0.00131394,0.115047,0.000119767,0.42622,0.022688,0.197484,0.0148336,0.36145,0.406019,0.381071,0.057779,0.643768,2.80983e-05,0.366326,0.000164197,0.0305485,0.50058,0.443185,0.0391928,0.875915,0.151996,0.227104,0.166658,0.250246,0.38649,0.000401783,0.00583062,0.04783,0.00228337,0.28907,0.164197,0.462688,0.0461094,0.000261949,0.478174,0.336276,0.468444,0.258219,0.119142,0.243383,0.191695,0.390974,0.382874,0.109758,0.161598,0.751174,0.0868402,0.00534461,0.799185,0.37357,0.200632,0.477353,0.199161,0.0132585,0.00415823,0.20342,0.0215953,0.20558,0.0505073,0.25656,0.425963,0.0696455,0.383291,0.000717871,0.141318,0.411941,0.0961477,0.314438,0.354789,0.163828,0.230581,0.120226,0.28424,0.0513026,0.314429,2.26795e-06,0.282286,0.194707,0.24884,0.408413,0.000926901,3.44811e-06,0.000830547,0.33942,0.000436901,0.0136291,0.522605,0.221908,0.0433137,0.222037,0.000242482,0.10205,0.00379537,0.00246111,0.0118519,0.204817,0.0233392,0.138871,0.103502,0.000885521,0.19783,0.0833851,0.316453,0.140384,0.175199,0.0628556,0.373557,0.000122849,0.408861,0.365487,0.000145338,0.000165487,0.0109626,0.236011,0.203486,0.273398,0.375787,0.0223007,0.351067,0.00438156,0.000640194,0.305885,0.241132,0.371414,0.30666,0.303709,0.495883,0.386538,0.035296,0.250964,0.383276,0.457886,0.0344603,0.0262575,0.159791,0.196976,0.019637,0.0254647,0.601877,4.10272e-05,0.127092,0.0048173,0.0102434,0.472935,0.399569,0.273281,0.0114705,0.275089,0.0133102,0.47795,0.359231,0.339729,0.197805,0.0690807,0.387069,0.332774,0.0406989,0.299887,0.634365,9.6965e-05,0.17639,0.0779009,0.276869,0.205298,0.0337138,1.00365e-07,0.258854,0.188263,0.0719199,0.264884,0.162568,0.19104,0.0140817,0.219428,0.208013,0.0900729,0.0953646,0.166124,0.000235773,2.23016e-09,0.255516,0.00176345,0.0224033,0.0171537,0.193601,6.56385e-06,6.90634e-06,0.00893033,0.310674,0.21801,0.0211771,0.186804,0.000344402,0.199468,0.0325925,0.0933115,0.12405,0.179889,0.226869,0.27872,0.0855609,0.131118,0.20837,0.247588,0.00219731,9.30473e-07,0.000103317,0.266544,0.113092,7.07919e-07,0.00242972,0.162145,0.00241368,0.168748,0.0384949,0.0660995,0.0521984,0.0455518,0.268741,0.00160819,8.71529e-05,0.154941,0.120196,0.00503675,0.108462,0.0595618,0.00200124,0.158479,0.000131093,0.195218,0.124213,0.00361981,0.00632223,0.180606,0.000773769,0.257294,0.150733,0.217112,0.123917,0.184317,0.00123184,0.0723291,0.258496,0.0377094,0.203781,0.21382,0.207559,0.141867,0.193031,0.249101,0.115972,0.224568,0.246105,0.173026,0.200432,0.139785,0.197112,0.0315594,0.156465,0.13108,0.256963,0.222798,0.0157468,0.176789,0.0969345,0.202137,0.310405,0.0437875,0.218161,0.0822373,9.03667e-05,0.106739,0.0536053,0.0537737,0.000648679,0.078016,0.0407233,0.0537355,0.00717361,0.261724,0.211332,0.187731,0.233626,0.189559,9.53285e-05,0.0981146,0.064145,0.121913,4.56072e-05,0.000206969,0.0663259,0.0762523,0.000393514,0.00618871,0.000987475,0.066952,0.089609,0.0367455,0.13497,0.204393,0.295769,0.0457063,3.49635e-07,0.141729,0.263159,0.255956,0.200105,0.227491,0.29837,0.253509,0.177664,0.28365,0.264413,0.131761,0.160658,0.206239,0.19924,0.28689,0.236464,0.325148,0.115817,0.218052,0.0271615,0.11528,0.194982,0.190993,0.000383954,0.283218,0.249955,0.00084829,0.224257,0.0935776,2.17865e-07,0.00230715,0.207791,0.0958756,0.0859274,3.07111e-06,0.171683,0.158847,0.271275,0.071111,4.6913e-08,0.101021,0.222548,0.00104522,0.157274,0.215705,0.00332029,0.205954,0.0750181 | |tfbs_overrepresentation=0.147255,3.52041e-05,0.716932,0.00115693,0.199763,0.000422139,0.0430074,0.414564,0.03272,0.0257057,0.139423,0.225367,0.188771,0.125978,0.148679,0.0619003,0.140982,0.0982016,2.56193e-05,0.108057,0.188635,0.132577,0.081977,0.0948982,0.0415721,0.215492,0.0236364,0.00424558,0.143747,0.0933697,0.204953,0.114046,0.0180314,0.208242,0.0665252,0.0844722,0.688181,0.000936648,0.120351,0.0667043,0.0964797,0.0246116,0.140039,0.184019,0.120917,0.0362416,0.0380166,0.18151,0.111283,0.121201,0.154071,0.0541794,0.0701653,0.0929951,0.00153794,0.0384161,0.107455,0.00190755,0.0783235,0.000212944,0.0294301,2.51181e-05,6.64006e-06,0.0759481,0.054569,0.0504887,0.00104991,0.0600088,0.0860723,4.42987e-08,0.0831028,5.4424e-05,0.089036,0.000311415,0.00747605,0.0171177,0.0964936,0.0436945,0.0372495,0.00725252,0.0956287,0.0279481,0.0425,0.114846,0.291327,0.251834,0.064341,0.209032,0.0693924,0.062747,0.0857568,0.0495878,0.0953825,0.0473737,0.0853887,0.115028,0.58489,0.153631,0.000142889,0.27413,0.0574857,0.276221,0.141874,0.0370665,0.219088,0.0409286,0.0669887,0.338096,0.144217,0.0400492,0.182599,0.0339971,0.149552,0.0176855,0.005305,0.000576135,0.0203386,0.0566549,0.000499822,0.0838393,0.01474,0.214708,0.140123,0.0857827,0.102368,0.0166632,3.15443e-06,0.0147934,0.0843604,0.134932,0.0595773,0.0748346,0.0572164,0.0227861,0.125792,0.108101,0.0648644,0.0553359,0.0330399,0.00395526,0.022776,3.52681e-07,0.00166778,2.85883e-08,0.596561,0.0693171,0.0988228,0.0842275,0.0389418,2.39098e-14,0.0216297,0.000553889,0.00113738,0.0265818,0.0427088,0.117549,0.0747594,0.0283286,0.0516985,0.0337251,0.0281563,0.0952829,0.000289805,0.000604898,0.273479,0.114283,0.0400322,0.127369,0.0403542,4.47691e-05,0.179689,0.137725,0.12972,0.0541353,0.0799324,0.090079,0.140334,0.181817,0.178449,0.0356339,0.158844,0.122474,0.0274061,0.00695194,0.00278703,0.118847,0.183031,0.0401756,0.0828697,0.0160177,0.107145,0.187297,0.122935,0.0284396,0.112671,0.00112574,0.0782523,0.0602859,0.0676496,0.109673,0.0893019,0.060398,0.0308319,0.0606036,0.000471598,0.259411,0.0042906,0.15185,0.206299,0.178359,0.0458667,0.104357,0.0076549,0.1129,0.0549274,0.0151713,0.164202,0.100942,0.062995,0.10299,0.14193,0.0800546,0.15606,0.161026,0.0738599,0.126611,0.138852,0.085973,0.060453,0.059896,0.0538541,0.384785,0.0418404,0.0765029,0.0959204,0.0931946,0.0472272,0.263087,0.000830039,0.214803,0.0177645,0.00958651,0.0983991,0.0830921,0.00703932,0.136838,0.0815104,0.111647,0.0119747,0.117027,0.159052,0.0183114,0.185743,0.0980288,0.0980899,0.159674,0.107242,0.201859,0.0024791,0.582402,0.0619218,0.1751,0.163376,0.128096,0.0345133,0.0810678,0.0811639,0.0920653,0.118078,0.0755168,0.278352,0.00204659,0.003405,0.00320178,0.00386209,0.0380459,0.130174,0.584917,0.713218,0.782949,0.0821962,0.0101922,0.0986134,0.807281,0.0083957,9.35433e-09,0.261553,0.446302,0.000126821,0.309233,0.0313047,4.13079e-06,0.0018019,0.329568,0.178727,0.0164332,0.271958,0.00531795,0.000206884,0.0148713,0.217139,0.0139202,0.187251,0.0109219,5.74374e-05,0.00249167,0.00628346,0.330894,0.0257868,0.0190732,0.0124294,0.025356,0.000737505,0.528324,1.21859e-05,0.0117562,0.101703,0.142924,0.253571,0.276829,0.00591608,0.481778,0.316882,0.223503,8.97596e-05,0.603208,0.0447111,0.314747,0.21363,0.291709,0.120054,0.576651,0.102333,0.292835,0.137839,0.439556,0.0807167,3.52276e-06,0.241757,0.18237,0.126021,0.248484,0.0133926,0.275351,0.236471,0.185661,0.00934251,0.535598,0.0405716,0.000544819,0.503058,0.513852,9.26503e-08,0.248634,0.281576,0.000524881,0.0141151,0.0670502,0.0730934,0.184794,0.00243366,0.421596,3.67265e-07,0.412837,0.0267008,0.00875805,0.551561,0.0225539,0.218623,0.0550136,0.117923,0.0451077,0.0747529,0.229003,0.650179,0.061213,0.50215,0.0054714,0.00907354,0.477304,0.289204,0.327108,0.109738,0.278044,0.229008,0.0193295,0.228096,0.00847033,0.19763,0.0129079,0.0106166,0.421464,6.49276e-05,0.420626,0.516462,0.858756,0.000835902,0.144809,0.145539,0.385517,0.376191,0.0224279,2.0263e-08,0.252232,0.152681,0.0465712,0.137098,0.0369524,0.134788,0.0985856,0.0460163,0.293698,0.284593,0.343734,0.00055939,0.305777,0.06617,7.63932e-07,0.00696513,0.284629,0.262537,0.010587,0.226257,0.016014,0.41707,0.0110128,1.42726e-09,0.753577,0.206222,0.525396,0.284166,0.437176,0.269226,0.339277,0.192529,0.000382139,0.141758,0.455379,0.000974263,0.159617,0.238587,9.51685e-06,0.00252695,0.0192138,0.00409641,0.0595618,0.524997,0.0769581,0.00943126,0.539392,8.63298e-05,5.22751e-06,0.0158269,0.000670954,9.88726e-06,0.316179,0.0697683,0.0556835,0.192544,8.39939e-05,0.0575676,0.144322,0.223391,4.2235e-06,0.0216577,0.0214618,0.191777,0.111931,1.64711e-06,0.0435386,0.303336,0.000372475,0.134852,0.10689,0.273326,0.0627924,0.381386,0.0179103,0.303939,0.279795,0.390395,0.0464827,0.169603,0.114583,0.104559,0.0899537,0.0866966,0.15983,0.0059529,0.0438639,0.00389058,0.123593,0.129156,0.210369,0.0200986,0.346372,0.0499762,0.0828956,0.0666953,2.31993e-06,0.111277,0.219383,0.00817962,7.86053e-05,0.00915124,0.188694,0.0481795,0.199971,0.016022,0.127758,0.175785,0.0012141,0.169234,0.0876426,0.0952322,0.0112557,0.00220026,0.107043,0.275244,0.00481323,0.173708,0.141119,0.211595,0.0300692,0.131551,0.0445237,0.052362,0.208866,0.0123828,0.0797897,0.0974211,0.000777797,0.00796449,0.0906475,0.0558058,0.00477066,0.166024,0.009894,0.0145999,0.0656973,0.211746,0.026334,0.0801488,0.0757897,0.161801,0.193215,0.0549034,8.39064e-05,0.00160873,0.0417636,0.0345419,0.0388736,0.254674,0.170307,0.0217163,0.0488949,0.174921,0.0791124,0.0330727,0.348757,0.219556,0.0394698,3.70228e-05,0.0178982,0.122476,0.108872,0.11002,0.26144,0.0286025,0.549354,0.144567,0.038848,0.0874516,0.0550279,0.144067,0.00335855,0.0254773,0.190048,0.131088,0.394069,0.237101,0.286988,0.0761239,0.172491,0.0818785,0.182701,0.0637246,0.147698,0.141463,0.167267,0.140622,0.0889592,0.309588,0.28711,0.0473033,0.094881,0.118532,0.132886,0.0774373,0.109194,0.128564,0.00904548,0.112518,0.0226843,2.41547e-05,0.0993999,0.00127324,0.061829,0.0755121,0.0936516,0.144075,0.0340203,0.0741807,0.0425274,0.739716,0.655293,0.0255266,0.289306,0.00740669,0.192475,0.00108376,0.0088427,0.057571,0.00115086,0.00174134,0.0608699,0.175319,0.300597,0.0713214,0.00224624,3.01989e-05,0.0355833,3.24692e-07,0.175094,0.911304,0.936279,0.206454,0.0257531,0.108277,0.0673484,0.108748,0.0494066,0.0958493,0.205732,0.0755808,0.045654,0.110216,0.070276,0.226171,0.0124298,0.0376916,0.13262,0.0450031,2.72191e-05,0.114242,0.0929549,1.72873e-06,0.00020908,0.221645,0.057168,0.234298,0.0759837,0.286863,0.152372,0.194941,0.0257725,0.101607,0.327067,0.172982,0.0661495,0.151597,0.0626744,0.191335,0.148574,0.504592,0.155821,0.00264837,0.0919008,0.0602373,6.72848e-07,0.15063,0.0973823,0.15503,0.000943322,0.00141547,0.000479913,0.228144,0.251466,0.0050797,0.00738316,0.00362128,0.00806892,0.113145,7.72788e-06,0.186638,0.174776,0.0948451,0.0384217,0.249049,0.140533,0.000178916,0.00352872,0.103667,0.113069,0.025556,1.50087e-06,0.09066,0.585505,0.000886556,0.188651,0.0813902,0.184948,0.156261,0.0546539,0.0362615,0.0590944,0.247324,0.178389,0.0020701,0.00248603,0.407281,0.252227,0.0360851,0.0998546,0.131093,0.0434602,0.133616,0.0177337,0.36927,0.0227305,0.407369,0.231447,0.00131394,0.115047,0.000119767,0.42622,0.022688,0.197484,0.0148336,0.36145,0.406019,0.381071,0.057779,0.643768,2.80983e-05,0.366326,0.000164197,0.0305485,0.50058,0.443185,0.0391928,0.875915,0.151996,0.227104,0.166658,0.250246,0.38649,0.000401783,0.00583062,0.04783,0.00228337,0.28907,0.164197,0.462688,0.0461094,0.000261949,0.478174,0.336276,0.468444,0.258219,0.119142,0.243383,0.191695,0.390974,0.382874,0.109758,0.161598,0.751174,0.0868402,0.00534461,0.799185,0.37357,0.200632,0.477353,0.199161,0.0132585,0.00415823,0.20342,0.0215953,0.20558,0.0505073,0.25656,0.425963,0.0696455,0.383291,0.000717871,0.141318,0.411941,0.0961477,0.314438,0.354789,0.163828,0.230581,0.120226,0.28424,0.0513026,0.314429,2.26795e-06,0.282286,0.194707,0.24884,0.408413,0.000926901,3.44811e-06,0.000830547,0.33942,0.000436901,0.0136291,0.522605,0.221908,0.0433137,0.222037,0.000242482,0.10205,0.00379537,0.00246111,0.0118519,0.204817,0.0233392,0.138871,0.103502,0.000885521,0.19783,0.0833851,0.316453,0.140384,0.175199,0.0628556,0.373557,0.000122849,0.408861,0.365487,0.000145338,0.000165487,0.0109626,0.236011,0.203486,0.273398,0.375787,0.0223007,0.351067,0.00438156,0.000640194,0.305885,0.241132,0.371414,0.30666,0.303709,0.495883,0.386538,0.035296,0.250964,0.383276,0.457886,0.0344603,0.0262575,0.159791,0.196976,0.019637,0.0254647,0.601877,4.10272e-05,0.127092,0.0048173,0.0102434,0.472935,0.399569,0.273281,0.0114705,0.275089,0.0133102,0.47795,0.359231,0.339729,0.197805,0.0690807,0.387069,0.332774,0.0406989,0.299887,0.634365,9.6965e-05,0.17639,0.0779009,0.276869,0.205298,0.0337138,1.00365e-07,0.258854,0.188263,0.0719199,0.264884,0.162568,0.19104,0.0140817,0.219428,0.208013,0.0900729,0.0953646,0.166124,0.000235773,2.23016e-09,0.255516,0.00176345,0.0224033,0.0171537,0.193601,6.56385e-06,6.90634e-06,0.00893033,0.310674,0.21801,0.0211771,0.186804,0.000344402,0.199468,0.0325925,0.0933115,0.12405,0.179889,0.226869,0.27872,0.0855609,0.131118,0.20837,0.247588,0.00219731,9.30473e-07,0.000103317,0.266544,0.113092,7.07919e-07,0.00242972,0.162145,0.00241368,0.168748,0.0384949,0.0660995,0.0521984,0.0455518,0.268741,0.00160819,8.71529e-05,0.154941,0.120196,0.00503675,0.108462,0.0595618,0.00200124,0.158479,0.000131093,0.195218,0.124213,0.00361981,0.00632223,0.180606,0.000773769,0.257294,0.150733,0.217112,0.123917,0.184317,0.00123184,0.0723291,0.258496,0.0377094,0.203781,0.21382,0.207559,0.141867,0.193031,0.249101,0.115972,0.224568,0.246105,0.173026,0.200432,0.139785,0.197112,0.0315594,0.156465,0.13108,0.256963,0.222798,0.0157468,0.176789,0.0969345,0.202137,0.310405,0.0437875,0.218161,0.0822373,9.03667e-05,0.106739,0.0536053,0.0537737,0.000648679,0.078016,0.0407233,0.0537355,0.00717361,0.261724,0.211332,0.187731,0.233626,0.189559,9.53285e-05,0.0981146,0.064145,0.121913,4.56072e-05,0.000206969,0.0663259,0.0762523,0.000393514,0.00618871,0.000987475,0.066952,0.089609,0.0367455,0.13497,0.204393,0.295769,0.0457063,3.49635e-07,0.141729,0.263159,0.255956,0.200105,0.227491,0.29837,0.253509,0.177664,0.28365,0.264413,0.131761,0.160658,0.206239,0.19924,0.28689,0.236464,0.325148,0.115817,0.218052,0.0271615,0.11528,0.194982,0.190993,0.000383954,0.283218,0.249955,0.00084829,0.224257,0.0935776,2.17865e-07,0.00230715,0.207791,0.0958756,0.0859274,3.07111e-06,0.171683,0.158847,0.271275,0.071111,4.6913e-08,0.101021,0.222548,0.00104522,0.157274,0.215705,0.00332029,0.205954,0.0750181 | ||
}} | }} |
Revision as of 13:21, 5 September 2012
Full id: C3393_hereditary_caudate_parietal_breast_locus_putamen_pons
Phase1 CAGE Peaks
Hg19::chr14:100485771..100485833,+ | p4@EVL |
Hg19::chr14:100485908..100485924,+ | p25@EVL |
Hg19::chr14:100485927..100485938,+ | p29@EVL |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
No results for this coexpression
Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data
No GOStat results
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>
Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
Motifs | -log10(p-value) |
---|---|
{{{tfbs_overrepresentation_jaspar}}} |
ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data
(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)
TF | #promoters | Enrichment | p-value | q-value |
---|---|---|---|---|
FOXA2#3170 | 2 | 16.4203091684435 | 0.00481068235210548 | 0.0225818173478154 |
TRIM28#10155 | 3 | 18.5905250452625 | 0.000155596929725528 | 0.00196688304812447 |
USF1#7391 | 3 | 6.36149927720796 | 0.0038840405729056 | 0.0189846638926236 |
Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data
This analysis result is provided for C0 - C305 clusters.