UBERON:0002428: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 15: | Line 15: | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from=UBERON:0010881 | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of=UBERON:0002091;;UBERON:0002101 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 13:32, 27 June 2012
| Name: | limb bone | ||
|---|---|---|---|
| Definition: | "A bone that is part of a limb [Obol]." [OBOL:automatic] | ||
| Xrefs: |
| ||
| Synonyms: |
"bone of limb" EXACT [OBOL:automatic] "free limb bone" EXACT [UBERON:cjm, UBERONREF:0000003] | ||
| Comments: | AO notes: NCITA includes clavicle. MA:'limb bone' is actually a bone of limb or girdle // Note that the formal definition is very inclusive, and includes sesamoids | ||
| Alt_id: | UBERON:MA_0000688-MIAA_0000151 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002513(endochondral bone),UBERON:0004120(mesoderm-derived structure),UBERON:0004375(bone of free limb or fin),UBERON:0010740(bone of appendage girdle complex) |
|---|---|
| develops_from: | UBERON:0010881(limb cartilage element) |
| part_of: | UBERON:0002091(appendicular skeleton),UBERON:0002101(limb) |
Children
| is a: | UBERON:0003464 (hindlimb bone),UBERON:0003606 (limb long bone) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Mouse (Mus musculus)
- 1350-25C3 (bone (os femoris), neonate N20)
- 1525-43A6 (bone (os femoris), neonate N16)
- 1985-43F5 (bone (os femoris), neonate N02)
- 56-12G2 (bone (os femoris), adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002428 (limb bone), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.4e-49 | FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_6b914f1752389a452716f2dc2aa64de6 | p26@Myo18a |
| 3.4e-49 | FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_6b914f1752389a452716f2dc2aa64de6 | p26@Myo18a |
| 4.96e-49 | FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_4b3a70556aaf108bdd6b84f5ee30fcd0 | p@chr8:75097542..75097549, + |
| 4.96e-49 | FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_4b3a70556aaf108bdd6b84f5ee30fcd0 | p@chr9:21934585..21934591, - |
| 4.96e-49 | FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_4b3a70556aaf108bdd6b84f5ee30fcd0 | p@chr2:32482372..32482381, + |
| 4.96e-49 | FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_4b3a70556aaf108bdd6b84f5ee30fcd0 | p@chr9:21934585..21934591, - |
| 4.96e-49 | FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_4b3a70556aaf108bdd6b84f5ee30fcd0 | p@chr8:75097542..75097549, + |
| 4.96e-49 | FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_4b3a70556aaf108bdd6b84f5ee30fcd0 | p@chr2:32482372..32482381, + |
| 3.15e-44 | FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_7e781031c4401c9a645fa42e6cb89dab | p@chr6:51525810..51525817, + |
| 3.15e-44 | FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_7e781031c4401c9a645fa42e6cb89dab | p@chr6:51525810..51525817, + |
| 9.78e-40 | FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_6e4fff2082769cadc934a1cdbfa7a6ea | p@chr19:4876870..4876880, - |
| 9.78e-40 | FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_6e4fff2082769cadc934a1cdbfa7a6ea | p@chr19:4876870..4876880, - |
| 1.15e-39 | FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_81424880b6e7154b72cce0c27e7ae20a | p@chr1:174140324..174140335, - |
| 1.15e-39 | FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_81424880b6e7154b72cce0c27e7ae20a | p@chr11:67063327..67063335, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_81424880b6e7154b72cce0c27e7ae20a | p@chr16:24096441..24096449, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_81424880b6e7154b72cce0c27e7ae20a | p@chr6:4490674..4490679, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_81424880b6e7154b72cce0c27e7ae20a | p@chr6:4490674..4490679, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_81424880b6e7154b72cce0c27e7ae20a | p@chr11:67063327..67063335, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_81424880b6e7154b72cce0c27e7ae20a | p@chr16:24096441..24096449, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_81424880b6e7154b72cce0c27e7ae20a | p@chr1:174140324..174140335, - |
| 1.55e-39 | FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_fa262664c952bc42cc901ee03653005b | p@chr1:174143249..174143260, - |
| 1.55e-39 | FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_fa262664c952bc42cc901ee03653005b | p@chr1:174143249..174143260, - |
| 3.03e-39 | FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_23fcd27be1aef58220a1a5a3103caea2 | p@chr6:51525869..51525891, + |
| 3.03e-39 | FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_23fcd27be1aef58220a1a5a3103caea2 | p@chr6:51525869..51525891, + |
| 9.31e-39 | FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_36131a2a57da13640b856eaa7f6c3f26 | p3@Asb16 |
| 9.31e-39 | FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_36131a2a57da13640b856eaa7f6c3f26 | p3@Asb16 |
| 2.41e-35 | FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_fbec8f43b22e1f371532151a93fa3b83 | p@chr7:133604286..133604297, - |
| 2.41e-35 | FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_fbec8f43b22e1f371532151a93fa3b83 | p@chr7:133604286..133604297, - |
| 2.95e-35 | FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_316c8ce50d393d8def1fbd046026abd6 | p5@Pla2g5 |
| 2.95e-35 | FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_316c8ce50d393d8def1fbd046026abd6 | p5@Pla2g5 |
| 9.53e-34 | FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_006ca76b99a81b897db9037dee3c6cce | p2@uc009mdq.1 |
| 9.53e-34 | FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_006ca76b99a81b897db9037dee3c6cce | p2@uc009mdq.1 |
| 1.23e-33 | FFCP PHASE1:Mm9::chr2:164773241..164773248,+#_d760c078850abc92a7bac18ce02137cb | p3@Mmp9 |
| 1.23e-33 | FFCP PHASE2:Mm9::chr2:164773241..164773248,+#_d760c078850abc92a7bac18ce02137cb | p3@Mmp9 |
| 1.58e-33 | FFCP PHASE1:Mm9::chr7:3567707..3567718,-#_df31328948c81d2a8b03c91e7ce00a92 | p2@Oscar |
| 1.58e-33 | FFCP PHASE2:Mm9::chr7:3567707..3567718,-#_df31328948c81d2a8b03c91e7ce00a92 | p2@Oscar |
| 1.58e-33 | FFCP PHASE2:Mm9::chr1:166815111..166815121,-#_df31328948c81d2a8b03c91e7ce00a92 | p@chr1:166815111..166815121, - |
| 1.58e-33 | FFCP PHASE1:Mm9::chr1:166815111..166815121,-#_df31328948c81d2a8b03c91e7ce00a92 | p@chr1:166815111..166815121, - |
| 2.04e-33 | FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_2db033de9cbf1c7281d814a05278738b | p@chr11:75409652..75409664, + |
| 2.04e-33 | FFCP PHASE1:Mm9::chr9:70799951..70799962,-#_2db033de9cbf1c7281d814a05278738b | p4@Lipc |
| 2.04e-33 | FFCP PHASE2:Mm9::chr9:70799951..70799962,-#_2db033de9cbf1c7281d814a05278738b | p4@Lipc |
| 2.04e-33 | FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_2db033de9cbf1c7281d814a05278738b | p@chr11:75409652..75409664, + |
| 3.38e-33 | FFCP PHASE1:Mm9::chr15:102196702..102196713,-#_4890f2c499749cb6cff4c3d3d4f28153 | p6@Sp7 |
| 3.38e-33 | FFCP PHASE2:Mm9::chr15:102196702..102196713,-#_4890f2c499749cb6cff4c3d3d4f28153 | p6@Sp7 |
| 7.17e-33 | FFCP PHASE1:Mm9::chr18:76271498..76271508,+#_71d314c7f415f27acc09589e22c0ceda | p@chr18:76271498..76271508, + |
| 7.17e-33 | FFCP PHASE2:Mm9::chr18:76271498..76271508,+#_71d314c7f415f27acc09589e22c0ceda | p@chr18:76271498..76271508, + |
| 7.17e-33 | FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_71d314c7f415f27acc09589e22c0ceda | p@chr8:126415826..126415839, + |
| 7.17e-33 | FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_71d314c7f415f27acc09589e22c0ceda | p@chr8:126415826..126415839, + |
| 2.67e-30 | FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_4dd825b33f81688f1a9bd348d996629b | p@chr2:32482387..32482399, + |
| 2.67e-30 | FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_4dd825b33f81688f1a9bd348d996629b | p@chr2:32482387..32482399, + |
| 1.1e-29 | FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_239c816f2675feeabe6e55cd16b79276 | p@chr12:70396969..70396979, + |
| 1.1e-29 | FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_239c816f2675feeabe6e55cd16b79276 | p@chr12:70396969..70396979, + |
| 1.1e-29 | FFCP PHASE2:Mm9::chr15:58649683..58649688,-#_239c816f2675feeabe6e55cd16b79276 | p@chr15:58649683..58649688, - |
| 1.1e-29 | FFCP PHASE1:Mm9::chr15:58649683..58649688,-#_239c816f2675feeabe6e55cd16b79276 | p@chr15:58649683..58649688, - |
| 1.46e-29 | FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_5ae1f2d01e1b3a8c50eb7fbcaff73eee | p@chr7:133590998..133591009, - |
| 1.46e-29 | FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_5ae1f2d01e1b3a8c50eb7fbcaff73eee | p@chr7:133590998..133591009, - |
| 1.73e-29 | FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_84f37a654ca620b2605e950009e87d75 | p2@Myoz3 |
| 1.73e-29 | FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_84f37a654ca620b2605e950009e87d75 | p2@Myoz3 |
| 2.42e-29 | FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_d57509211e1c6e1c0d3aa3bdd1875c81 | p2@Myh4 |
| 2.42e-29 | FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_d57509211e1c6e1c0d3aa3bdd1875c81 | p2@Myh4 |
| 7.46e-29 | FFCP PHASE2:Mm9::chr1:57155729..57155740,-#_afcd807306984bb0bcf1ea163ac8e6c0 | p@chr1:57155729..57155740, - |
| 7.46e-29 | FFCP PHASE1:Mm9::chr1:57155729..57155740,-#_afcd807306984bb0bcf1ea163ac8e6c0 | p@chr1:57155729..57155740, - |
| 9.26e-29 | FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_90bad6c13934500bc2156a2b7d8acda2 | p@chr11:67056544..67056589, - |
| 9.26e-29 | FFCP PHASE2:Mm9::chr4:43597258..43597265,-#_90bad6c13934500bc2156a2b7d8acda2 | p1@Msmp |
| 9.26e-29 | FFCP PHASE1:Mm9::chr4:43597258..43597265,-#_90bad6c13934500bc2156a2b7d8acda2 | p1@Msmp |
| 9.26e-29 | FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_90bad6c13934500bc2156a2b7d8acda2 | p@chr11:67056544..67056589, - |
| 1.15e-28 | FFCP PHASE2:Mm9::chrY:2858251..2858257,+#_84dce02ef6637a0c86340bf13cd081f0 | p@chrY:2858251..2858257, + |
| 1.15e-28 | FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_84dce02ef6637a0c86340bf13cd081f0 | p@chr6:90552017..90552024, + |
| 1.15e-28 | FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_84dce02ef6637a0c86340bf13cd081f0 | p@chr6:90552017..90552024, + |
| 1.15e-28 | FFCP PHASE1:Mm9::chrY:2858251..2858257,+#_84dce02ef6637a0c86340bf13cd081f0 | p@chrY:2858251..2858257, + |
| 1.43e-28 | FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_d890dc053b842530871bc1facf821ad6 | p@chr6:34436258..34436292, + |
| 1.43e-28 | FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_d890dc053b842530871bc1facf821ad6 | p@chr6:34436258..34436292, + |
| 2.2e-28 | FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_4c2d89969bbf040657b00de1ae22471b | p@chr11:67069796..67069817, - |
| 2.2e-28 | FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_4c2d89969bbf040657b00de1ae22471b | p@chr11:67069796..67069817, - |
| 2.72e-28 | FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_9afe6015f5b1c94b9c5abf1af1b13e75 | p@chr8:107702369..107702386, + |
| 2.72e-28 | FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_9afe6015f5b1c94b9c5abf1af1b13e75 | p@chr8:107702369..107702386, + |
| 3.45e-28 | FFCP PHASE1:Mm9::chr18:78254135..78254146,-#_37e64721bc9df4940a562b632ed0b849 | p1@Siglec15 |
| 3.45e-28 | FFCP PHASE2:Mm9::chr18:78254135..78254146,-#_37e64721bc9df4940a562b632ed0b849 | p1@Siglec15 |
| 6.5e-28 | FFCP PHASE1:Mm9::chr7:133591490..133591500,-#_0490cb81098340e2ba6f1a7709aeb29d | p6@Atp2a1 |
| 6.5e-28 | FFCP PHASE2:Mm9::chr7:133591490..133591500,-#_0490cb81098340e2ba6f1a7709aeb29d | p6@Atp2a1 |
| 8.9e-28 | FFCP PHASE2:Mm9::chr7:133591156..133591165,-#_2e801d430fd8815149cad1e40aeb864a | p7@Atp2a1 |
| 8.9e-28 | FFCP PHASE1:Mm9::chr7:133591156..133591165,-#_2e801d430fd8815149cad1e40aeb864a | p7@Atp2a1 |
| 1.42e-27 | FFCP PHASE2:Mm9::chr7:133600635..133600663,+#_c652ed96e6e64beaf3c456e910d91e7f | p@chr7:133600635..133600663, + |
| 1.42e-27 | FFCP PHASE1:Mm9::chr7:133600635..133600663,+#_c652ed96e6e64beaf3c456e910d91e7f | p@chr7:133600635..133600663, + |
| 1.42e-27 | FFCP PHASE2:Mm9::chr7:133592162..133592188,-#_c652ed96e6e64beaf3c456e910d91e7f | p@chr7:133592162..133592188, - |
| 1.42e-27 | FFCP PHASE1:Mm9::chr7:133592162..133592188,-#_c652ed96e6e64beaf3c456e910d91e7f | p@chr7:133592162..133592188, - |
| 6.75e-27 | FFCP PHASE2:Mm9::chr11:94837662..94837673,-#_2a7f67133891359fa9c69440a6c550b8 | p4@Sgca |
| 6.75e-27 | FFCP PHASE1:Mm9::chr11:94837662..94837673,-#_2a7f67133891359fa9c69440a6c550b8 | p4@Sgca |
| 1.66e-26 | FFCP PHASE1:Mm9::chr5:104754379..104754387,+#_8d3ff3c72d556216e46229e338d7161f | p1@Mepe |
| 1.66e-26 | FFCP PHASE2:Mm9::chr5:104754379..104754387,+#_8d3ff3c72d556216e46229e338d7161f | p1@Mepe |
| 3.47e-26 | FFCP PHASE1:Mm9::chr16:32400888..32400899,+#_d28b6346c2fa2136e09ae9a26c6f1d86 | p2@Tm4sf19 |
| 3.47e-26 | FFCP PHASE2:Mm9::chr12:81581216..81581231,+#_d28b6346c2fa2136e09ae9a26c6f1d86 | p@chr12:81581216..81581231, + |
| 3.47e-26 | FFCP PHASE1:Mm9::chr12:81581216..81581231,+#_d28b6346c2fa2136e09ae9a26c6f1d86 | p@chr12:81581216..81581231, + |
| 3.47e-26 | FFCP PHASE2:Mm9::chr16:32400888..32400899,+#_d28b6346c2fa2136e09ae9a26c6f1d86 | p2@Tm4sf19 |
| 1.12e-25 | FFCP PHASE2:Mm9::chr17:34176173..34176200,+#_d3b278bcd9ab5de9608bacfc2521f98a | p5@Col11a2 |
| 1.12e-25 | FFCP PHASE1:Mm9::chr15:97806574..97806585,-#_d3b278bcd9ab5de9608bacfc2521f98a | p@chr15:97806574..97806585, - |
| 1.12e-25 | FFCP PHASE2:Mm9::chr15:97806574..97806585,-#_d3b278bcd9ab5de9608bacfc2521f98a | p@chr15:97806574..97806585, - |
| 1.12e-25 | FFCP PHASE1:Mm9::chr17:34176173..34176200,+#_d3b278bcd9ab5de9608bacfc2521f98a | p5@Col11a2 |
| 1.36e-25 | FFCP PHASE2:Mm9::chr2:180890942..180890956,-#_d59bc0ac3050836f8dfa6708aa6cec6c | p@chr2:180890942..180890956, - |
| 1.36e-25 | FFCP PHASE1:Mm9::chr2:180890942..180890956,-#_d59bc0ac3050836f8dfa6708aa6cec6c | p@chr2:180890942..180890956, - |
