CL:0002540: Difference between revisions
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|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | ||
|is_obsolete= | |is_obsolete= | ||
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Revision as of 13:04, 27 June 2012
| Name: | mesenchymal stem cell of the bone marrow |
|---|---|
| Namespace: | cell |
| Definition: | "A mesenchymal stem cell that is part of the bone marrow." [GOC:tfm] |
| Created by: | tmeehan |
| Creation date: | 2011-02-28T01:47:47Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000134(mesenchymal cell),CL:0002092(bone marrow cell) |
|---|---|
| part_of: | UBERON:0002371(bone marrow) |
Children
| is a: | FF:0000019 (canine mesenchymal stem cell),FF:0000035 (chicken mesenchymal stem cell),FF:0000149 (rat mesenchymal bone cell) |
|---|---|
| derives from: | FF:0000097 (human mesenchymal stem cell of bone marrow sample),FF:0000112 (mouse mesenchymal stem cell of bone marrow sample),FF:0000269 (human mesenchymal precursor cell of bone marrow sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11293-117A6 (Canine Mesenchymal stem cells - bone marrow derived, donor1)
- 11294-117A7 (Chicken Mesenchymal stem cells - bone marrow derived, donor1)
- 11296-117A9 (Rat Mesenchymal stem cells - bone marrow derived, donor1)
- 11370-118A2 (Canine Mesenchymal stem cells - bone marrow derived, donor2)
- 11373-118A5 (Rat Mesenchymal stem cells - bone marrow derived, donor2)
- 11442-118I2 (Canine Mesenchymal stem cells - bone marrow derived, donor3)
- 11445-118I5 (Rat Mesenchymal stem cells - bone marrow derived, donor3)
- 11464-119B6 (Mesenchymal Stem Cells - bone marrow, donor4)
- 11536-120A6 (Mesenchymal Stem Cells - bone marrow, donor1)
- 11616-122A5 (Mesenchymal Stem Cells - bone marrow, donor2)
... further results Mouse (Mus musculus)
- 11293-117A6 (Canine Mesenchymal stem cells - bone marrow derived, donor1)
- 11294-117A7 (Chicken Mesenchymal stem cells - bone marrow derived, donor1)
- 11296-117A9 (Rat Mesenchymal stem cells - bone marrow derived, donor1)
- 11370-118A2 (Canine Mesenchymal stem cells - bone marrow derived, donor2)
- 11373-118A5 (Rat Mesenchymal stem cells - bone marrow derived, donor2)
- 11442-118I2 (Canine Mesenchymal stem cells - bone marrow derived, donor3)
- 11445-118I5 (Rat Mesenchymal stem cells - bone marrow derived, donor3)
- 11464-119B6 (Mesenchymal Stem Cells - bone marrow, donor4)
- 11536-120A6 (Mesenchymal Stem Cells - bone marrow, donor1)
- 11616-122A5 (Mesenchymal Stem Cells - bone marrow, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002540 (mesenchymal stem cell of the bone marrow), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.33e-65 | FFCP PHASE2:Mm9::chr6:48992901..48992908,-#_59d287555f7a2dadecba117a2236ffa7 | p@chr6:48992901..48992908, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chr6:48992901..48992908,-#_59d287555f7a2dadecba117a2236ffa7 | p@chr6:48992901..48992908, - |
| 6.04e-65 | FFCP PHASE1:Mm9::chr7:53967438..53967455,+#_4dbae73084f0f66069e0f383e4021f32 | p@chr7:53967438..53967455, + |
| 6.04e-65 | FFCP PHASE2:Mm9::chr7:53967438..53967455,+#_4dbae73084f0f66069e0f383e4021f32 | p@chr7:53967438..53967455, + |
| 4.9e-53 | FFCP PHASE1:Mm9::chr6:49001848..49001855,+#_f6fd074c6e09ffa1c5264664fced008d | p@chr6:49001848..49001855, + |
| 4.9e-53 | FFCP PHASE2:Mm9::chr6:49001848..49001855,+#_f6fd074c6e09ffa1c5264664fced008d | p@chr6:49001848..49001855, + |
| 2.47e-52 | FFCP PHASE1:Mm9::chr8:125950637..125950639,-#_470fbfa0e8ad08247629c3c65737b959 | p@chr8:125950637..125950639, - |
| 2.47e-52 | FFCP PHASE2:Mm9::chr8:125950637..125950639,-#_470fbfa0e8ad08247629c3c65737b959 | p@chr8:125950637..125950639, - |
| 3.69e-52 | FFCP PHASE2:Mm9::chr11:8475592..8475595,-#_fbdd4d52216c5575419ce87ea3960bcb | p@chr11:8475592..8475595, - |
| 3.69e-52 | FFCP PHASE1:Mm9::chr11:8475592..8475595,-#_fbdd4d52216c5575419ce87ea3960bcb | p@chr11:8475592..8475595, - |
| 5.51e-52 | FFCP PHASE2:Mm9::chr1:122401450..122401455,-#_62b61edd8ae2a2db4709a2219f95dd70 | p3@Marco |
| 5.51e-52 | FFCP PHASE1:Mm9::chr8:125956453..125956462,-#_62b61edd8ae2a2db4709a2219f95dd70 | p@chr8:125956453..125956462, - |
| 5.51e-52 | FFCP PHASE1:Mm9::chr1:122401450..122401455,-#_62b61edd8ae2a2db4709a2219f95dd70 | p3@Marco |
| 5.51e-52 | FFCP PHASE2:Mm9::chr8:125956453..125956462,-#_62b61edd8ae2a2db4709a2219f95dd70 | p@chr8:125956453..125956462, - |
| 9.76e-45 | FFCP PHASE1:Hg19::chr7:7222449..7222458,+#_0ab45a4e79614fe3b83177c85f600013 | p10@C1GALT1 |
| 9.76e-45 | FFCP PHASE2:Hg19::chr7:7222449..7222458,+#_0ab45a4e79614fe3b83177c85f600013 | p10@C1GALT1 |
| 1.18e-44 | FFCP PHASE1:Mm9::chr6:48995347..48995356,+#_336dd5ebda4d38c009d180d352d256c9 | p@chr6:48995347..48995356, + |
| 1.18e-44 | FFCP PHASE1:Mm9::chr6:48997996..48998006,-#_336dd5ebda4d38c009d180d352d256c9 | p@chr6:48997996..48998006, - |
| 1.18e-44 | FFCP PHASE1:Mm9::chr6:48995364..48995370,+#_336dd5ebda4d38c009d180d352d256c9 | p@chr6:48995364..48995370, + |
| 1.18e-44 | FFCP PHASE2:Mm9::chr6:48997996..48998006,-#_336dd5ebda4d38c009d180d352d256c9 | p@chr6:48997996..48998006, - |
| 1.18e-44 | FFCP PHASE2:Mm9::chr6:48997291..48997298,+#_336dd5ebda4d38c009d180d352d256c9 | p@chr6:48997291..48997298, + |
| 1.18e-44 | FFCP PHASE2:Mm9::chr6:48995347..48995356,+#_336dd5ebda4d38c009d180d352d256c9 | p@chr6:48995347..48995356, + |
| 1.18e-44 | FFCP PHASE2:Mm9::chr4:136452258..136452269,-#_336dd5ebda4d38c009d180d352d256c9 | p@chr4:136452258..136452269, - |
| 1.18e-44 | FFCP PHASE1:Mm9::chr4:136452258..136452269,-#_336dd5ebda4d38c009d180d352d256c9 | p@chr4:136452258..136452269, - |
| 1.18e-44 | FFCP PHASE2:Mm9::chr6:48995364..48995370,+#_336dd5ebda4d38c009d180d352d256c9 | p@chr6:48995364..48995370, + |
| 1.18e-44 | FFCP PHASE1:Mm9::chr6:48997291..48997298,+#_336dd5ebda4d38c009d180d352d256c9 | p@chr6:48997291..48997298, + |
| 1.66e-44 | FFCP PHASE1:Mm9::chr6:48997804..48997812,+#_18c36de9fe319a19a7d0d46b75bd60c4 | p@chr6:48997804..48997812, + |
| 1.66e-44 | FFCP PHASE2:Mm9::chr6:48997804..48997812,+#_18c36de9fe319a19a7d0d46b75bd60c4 | p@chr6:48997804..48997812, + |
| 3.27e-44 | FFCP PHASE2:Mm9::chr6:48995448..48995454,+#_3352ebbc005d0baadc725b1128f71a51 | p@chr6:48995448..48995454, + |
| 3.27e-44 | FFCP PHASE1:Mm9::chr6:48995448..48995454,+#_3352ebbc005d0baadc725b1128f71a51 | p@chr6:48995448..48995454, + |
| 6.41e-44 | FFCP PHASE2:Mm9::chr8:125951622..125951629,-#_17a25216cfeb433ebba28fd302be4ee2 | p@chr8:125951622..125951629, - |
| 6.41e-44 | FFCP PHASE1:Mm9::chr8:125956513..125956519,-#_17a25216cfeb433ebba28fd302be4ee2 | p@chr8:125956513..125956519, - |
| 6.41e-44 | FFCP PHASE1:Mm9::chr8:125951622..125951629,-#_17a25216cfeb433ebba28fd302be4ee2 | p@chr8:125951622..125951629, - |
| 6.41e-44 | FFCP PHASE1:Mm9::chr11:69479320..69479327,-#_17a25216cfeb433ebba28fd302be4ee2 | p@chr11:69479320..69479327, - |
| 6.41e-44 | FFCP PHASE2:Mm9::chr8:125956513..125956519,-#_17a25216cfeb433ebba28fd302be4ee2 | p@chr8:125956513..125956519, - |
| 6.41e-44 | FFCP PHASE2:Mm9::chr11:69479320..69479327,-#_17a25216cfeb433ebba28fd302be4ee2 | p@chr11:69479320..69479327, - |
| 8.97e-44 | FFCP PHASE1:Mm9::chr2:157944705..157944714,-#_1e2bd49fb0cedd284859225a531c11d5 | p@chr2:157944705..157944714, - |
| 8.97e-44 | FFCP PHASE2:Mm9::chr10:116715054..116715061,-#_1e2bd49fb0cedd284859225a531c11d5 | p@chr10:116715054..116715061, - |
| 8.97e-44 | FFCP PHASE2:Mm9::chr8:125952972..125952981,-#_1e2bd49fb0cedd284859225a531c11d5 | p@chr8:125952972..125952981, - |
| 8.97e-44 | FFCP PHASE1:Mm9::chr8:125956179..125956189,-#_1e2bd49fb0cedd284859225a531c11d5 | p@chr8:125956179..125956189, - |
| 8.97e-44 | FFCP PHASE2:Mm9::chr1:173159866..173159877,-#_1e2bd49fb0cedd284859225a531c11d5 | p@chr1:173159866..173159877, - |
| 8.97e-44 | FFCP PHASE1:Mm9::chr1:173159866..173159877,-#_1e2bd49fb0cedd284859225a531c11d5 | p@chr1:173159866..173159877, - |
| 8.97e-44 | FFCP PHASE1:Mm9::chr8:125952972..125952981,-#_1e2bd49fb0cedd284859225a531c11d5 | p@chr8:125952972..125952981, - |
| 8.97e-44 | FFCP PHASE2:Mm9::chr2:157944705..157944714,-#_1e2bd49fb0cedd284859225a531c11d5 | p@chr2:157944705..157944714, - |
| 8.97e-44 | FFCP PHASE1:Mm9::chr10:116715054..116715061,-#_1e2bd49fb0cedd284859225a531c11d5 | p@chr10:116715054..116715061, - |
| 8.97e-44 | FFCP PHASE2:Mm9::chr8:125956179..125956189,-#_1e2bd49fb0cedd284859225a531c11d5 | p@chr8:125956179..125956189, - |
| 1.25e-43 | FFCP PHASE1:Mm9::chr8:125953346..125953349,-#_a58ab18369f5c5e9fecfb3a3c0ae4521 | p@chr8:125953346..125953349, - |
| 1.25e-43 | FFCP PHASE2:Mm9::chr8:125953346..125953349,-#_a58ab18369f5c5e9fecfb3a3c0ae4521 | p@chr8:125953346..125953349, - |
| 1.25e-43 | FFCP PHASE2:Mm9::chr17:57501115..57501124,+#_a58ab18369f5c5e9fecfb3a3c0ae4521 | p@chr17:57501115..57501124, + |
| 1.25e-43 | FFCP PHASE1:Mm9::chr17:57501115..57501124,+#_a58ab18369f5c5e9fecfb3a3c0ae4521 | p@chr17:57501115..57501124, + |
| 1.75e-43 | FFCP PHASE2:Mm9::chr6:122805870..122805874,-#_692606ee02f707981a5fd033301a3381 | p@chr6:122805870..122805874, - |
| 1.75e-43 | FFCP PHASE1:Mm9::chr6:122805870..122805874,-#_692606ee02f707981a5fd033301a3381 | p@chr6:122805870..122805874, - |
| 1.7e-39 | FFCP PHASE2:Mm9::chr8:124830874..124830875,+#_017b0e3ad086f7b475c264e711707a4f | p@chr8:124830874..124830875, + |
| 1.7e-39 | FFCP PHASE1:Mm9::chr8:124830874..124830875,+#_017b0e3ad086f7b475c264e711707a4f | p@chr8:124830874..124830875, + |
| 4.15e-39 | FFCP PHASE2:Mm9::chr10:93014574..93014575,+#_ec138a7d43bd5c75b0c92ef6d1a41f35 | p@chr10:93014574..93014575, + |
| 4.15e-39 | FFCP PHASE1:Mm9::chr10:93014574..93014575,+#_ec138a7d43bd5c75b0c92ef6d1a41f35 | p@chr10:93014574..93014575, + |
| 1.17e-38 | FFCP PHASE1:Mm9::chr6:48992877..48992890,-#_a30c777c2f3de9649a4f1fa1c410fa2e | p@chr6:48992877..48992890, - |
| 1.17e-38 | FFCP PHASE2:Mm9::chr6:48992765..48992800,+#_a30c777c2f3de9649a4f1fa1c410fa2e | p@chr6:48992765..48992800, + |
| 1.17e-38 | FFCP PHASE2:Mm9::chr6:48992877..48992890,-#_a30c777c2f3de9649a4f1fa1c410fa2e | p@chr6:48992877..48992890, - |
| 1.17e-38 | FFCP PHASE1:Mm9::chr6:48992765..48992800,+#_a30c777c2f3de9649a4f1fa1c410fa2e | p@chr6:48992765..48992800, + |
| 2.79e-38 | FFCP PHASE1:Mm9::chr8:125952310..125952320,+#_d6e84274fbc596046f820a3ca32921b5 | p@chr8:125952310..125952320, + |
| 2.79e-38 | FFCP PHASE2:Mm9::chr8:125952310..125952320,+#_d6e84274fbc596046f820a3ca32921b5 | p@chr8:125952310..125952320, + |
| 3.73e-38 | FFCP PHASE1:Mm9::chr19:3941548..3941557,+#_93fb6597e40ef81de1fa66652fe72908 | p@chr19:3941548..3941557, + |
| 3.73e-38 | FFCP PHASE1:Mm9::chr8:125952002..125952012,-#_93fb6597e40ef81de1fa66652fe72908 | p@chr8:125952002..125952012, - |
| 3.73e-38 | FFCP PHASE2:Mm9::chr19:3941548..3941557,+#_93fb6597e40ef81de1fa66652fe72908 | p@chr19:3941548..3941557, + |
| 3.73e-38 | FFCP PHASE2:Mm9::chr8:125952002..125952012,-#_93fb6597e40ef81de1fa66652fe72908 | p@chr8:125952002..125952012, - |
| 3.73e-38 | FFCP PHASE1:Mm9::chr8:125951545..125951559,-#_93fb6597e40ef81de1fa66652fe72908 | p@chr8:125951545..125951559, - |
| 3.73e-38 | FFCP PHASE2:Mm9::chr8:125951545..125951559,-#_93fb6597e40ef81de1fa66652fe72908 | p@chr8:125951545..125951559, - |
| 6.64e-38 | FFCP PHASE2:Mm9::chr6:82983194..82983205,-#_716dcb4d47e687853dccadc63bf7879f | p@chr6:82983194..82983205, - |
| 6.64e-38 | FFCP PHASE1:Mm9::chr8:125951458..125951466,-#_716dcb4d47e687853dccadc63bf7879f | p@chr8:125951458..125951466, - |
| 6.64e-38 | FFCP PHASE2:Mm9::chr8:125956332..125956339,-#_716dcb4d47e687853dccadc63bf7879f | p@chr8:125956332..125956339, - |
| 6.64e-38 | FFCP PHASE2:Mm9::chr8:125951458..125951466,-#_716dcb4d47e687853dccadc63bf7879f | p@chr8:125951458..125951466, - |
| 6.64e-38 | FFCP PHASE1:Mm9::chr6:82983194..82983205,-#_716dcb4d47e687853dccadc63bf7879f | p@chr6:82983194..82983205, - |
| 6.64e-38 | FFCP PHASE1:Mm9::chr8:125956332..125956339,-#_716dcb4d47e687853dccadc63bf7879f | p@chr8:125956332..125956339, - |
| 8.86e-38 | FFCP PHASE2:Mm9::chr17:45733632..45733648,-#_852d2c6f0668bebb1b22c402187392e0 | p@chr17:45733632..45733648, - |
| 8.86e-38 | FFCP PHASE1:Mm9::chr17:45733632..45733648,-#_852d2c6f0668bebb1b22c402187392e0 | p@chr17:45733632..45733648, - |
| 3.67e-34 | FFCP PHASE2:Mm9::chr6:48997958..48997979,-#_1d9a8d44fbab1a21820075b47284aa4d | p@chr6:48997958..48997979, - |
| 3.67e-34 | FFCP PHASE2:Mm9::chr6:49006588..49006597,+#_1d9a8d44fbab1a21820075b47284aa4d | p@chr6:49006588..49006597, + |
| 3.67e-34 | FFCP PHASE1:Mm9::chr6:48992884..48992893,+#_1d9a8d44fbab1a21820075b47284aa4d | p@chr6:48992884..48992893, + |
| 3.67e-34 | FFCP PHASE2:Mm9::chr4:136436677..136436688,-#_1d9a8d44fbab1a21820075b47284aa4d | p@chr4:136436677..136436688, - |
| 3.67e-34 | FFCP PHASE2:Mm9::chr3:87067576..87067584,-#_1d9a8d44fbab1a21820075b47284aa4d | p3@Fcrls |
| 3.67e-34 | FFCP PHASE2:Mm9::chrX:20505898..20505909,-#_1d9a8d44fbab1a21820075b47284aa4d | p@chrX:20505898..20505909, - |
| 3.67e-34 | FFCP PHASE2:Mm9::chr4:136452194..136452198,-#_1d9a8d44fbab1a21820075b47284aa4d | p@chr4:136452194..136452198, - |
| 3.67e-34 | FFCP PHASE1:Mm9::chr4:136436677..136436688,-#_1d9a8d44fbab1a21820075b47284aa4d | p@chr4:136436677..136436688, - |
| 3.67e-34 | FFCP PHASE1:Mm9::chr4:136452194..136452198,-#_1d9a8d44fbab1a21820075b47284aa4d | p@chr4:136452194..136452198, - |
| 3.67e-34 | FFCP PHASE1:Mm9::chr3:87067576..87067584,-#_1d9a8d44fbab1a21820075b47284aa4d | p3@Fcrls |
| 3.67e-34 | FFCP PHASE2:Mm9::chr3:87067625..87067636,-#_1d9a8d44fbab1a21820075b47284aa4d | p2@Fcrls |
| 3.67e-34 | FFCP PHASE1:Mm9::chr6:48997958..48997979,-#_1d9a8d44fbab1a21820075b47284aa4d | p@chr6:48997958..48997979, - |
| 3.67e-34 | FFCP PHASE1:Mm9::chr6:49006588..49006597,+#_1d9a8d44fbab1a21820075b47284aa4d | p@chr6:49006588..49006597, + |
| 3.67e-34 | FFCP PHASE1:Mm9::chrX:20505898..20505909,-#_1d9a8d44fbab1a21820075b47284aa4d | p@chrX:20505898..20505909, - |
| 3.67e-34 | FFCP PHASE2:Mm9::chr6:48992884..48992893,+#_1d9a8d44fbab1a21820075b47284aa4d | p@chr6:48992884..48992893, + |
| 3.67e-34 | FFCP PHASE1:Mm9::chr3:87067625..87067636,-#_1d9a8d44fbab1a21820075b47284aa4d | p2@Fcrls |
| 4.27e-34 | FFCP PHASE2:Hg19::chr20:49963208..49963211,-#_a142fd5347312a18c29af0043a6921e6 | p@chr20:49963208..49963211, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr20:49963208..49963211,-#_a142fd5347312a18c29af0043a6921e6 | p@chr20:49963208..49963211, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chrX:11455926..11455931,+#_4bdcca92325bbde39db293e1c540fc8c | p@chrX:11455926..11455931, + |
| 5.98e-34 | FFCP PHASE1:Hg19::chrX:11455926..11455931,+#_4bdcca92325bbde39db293e1c540fc8c | p@chrX:11455926..11455931, + |
| 6.12e-34 | FFCP PHASE1:Mm9::chr5:24046758..24046768,-#_ef2f9bf6ce2706a1720e5a5b3dbc9f91 | p3@Asb10 |
| 6.12e-34 | FFCP PHASE1:Mm9::chr11:69478859..69478867,-#_ef2f9bf6ce2706a1720e5a5b3dbc9f91 | p@chr11:69478859..69478867, - |
| 6.12e-34 | FFCP PHASE2:Mm9::chr5:24046758..24046768,-#_ef2f9bf6ce2706a1720e5a5b3dbc9f91 | p3@Asb10 |
| 6.12e-34 | FFCP PHASE2:Mm9::chr11:69478859..69478867,-#_ef2f9bf6ce2706a1720e5a5b3dbc9f91 | p@chr11:69478859..69478867, - |
