UBERON:0002091: Difference between revisions
From FANTOM5_SSTAR
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|id=UBERON:0002091
|name=appendicular skeleton
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|def="Subdivision of skeleton which consists of the total set of bones of the upper and lower limbs/app...") |
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Revision as of 17:15, 15 June 2012
| Name: | appendicular skeleton | ||
|---|---|---|---|
| Definition: | "Subdivision of skeleton which consists of the total set of bones of the upper and lower limbs/appendages[WP,cjm]." [Wikipedia:Appendicular_skeleton] | ||
| Xrefs: |
| ||
| Synonyms: | "paired fin skeleton" NARROW SENSU [] | ||
| Comments: | Note that ontologies differ in whether they treat the term appendicular skeleton as being the entire set of bones in the limbs, or whether the fore and hind limbs/fins are treated as seperate appendicular skeletons. Here we follow FMA, and treat the appendicular skeleton as the sum total of skeletal elements in the organism (this is evidenced by the fact that in FMA, skeleton of left/right upper/lower limb is part_of a appendicular skeleton, and subtypes of 'subdivision of appendicular skeleton'). We have separate classes such as 'skeleton of limb', and 'skeleton of hindlimb' for the 4 parts of the appendicular skeleton. In future the ZFA/TAO classes may be moved. Note also the FMA, confusingly, has a class appendicular skeletal system, which includes the upper and lower skeletal system as subtypes | ||
| Alt_id: | UBERON:FMA_71222-MA_0000290-MIAA_0000278-ZFA_0000027 | ||
| Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000075(subdivision of skeletal system) |
|---|
Children
| part of: | UBERON:0002495 (long bone),UBERON:0010712 (limb skeleton subdivision),UBERON:0010740 (bone of appendage girdle complex),UBERON:0010742 (bone of pelvic complex),UBERON:0010881 (limb cartilage element),UBERON:0010882 (limb bone pre-cartilage condensation),UBERON:0011582 (paired limb/fin skeleton),UBERON:0012476 (skeleton of pelvic complex) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Mouse (Mus musculus)
- 1350-25C3 (bone (os femoris), neonate N20)
- 1525-43A6 (bone (os femoris), neonate N16)
- 1985-43F5 (bone (os femoris), neonate N02)
- 56-12G2 (bone (os femoris), adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002091 (appendicular skeleton), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.4e-49 | FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_f73cfbfa1b07087029ff46352c9c1358 | p26@Myo18a |
| 3.4e-49 | FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_f73cfbfa1b07087029ff46352c9c1358 | p26@Myo18a |
| 4.96e-49 | FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_057d6e873bf0f424175d14980d98876e | p@chr9:21934585..21934591, - |
| 4.96e-49 | FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_057d6e873bf0f424175d14980d98876e | p@chr2:32482372..32482381, + |
| 4.96e-49 | FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_057d6e873bf0f424175d14980d98876e | p@chr9:21934585..21934591, - |
| 4.96e-49 | FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_057d6e873bf0f424175d14980d98876e | p@chr8:75097542..75097549, + |
| 4.96e-49 | FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_057d6e873bf0f424175d14980d98876e | p@chr2:32482372..32482381, + |
| 4.96e-49 | FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_057d6e873bf0f424175d14980d98876e | p@chr8:75097542..75097549, + |
| 3.15e-44 | FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_d6f15d81fbbd2718729961da22504a9d | p@chr6:51525810..51525817, + |
| 3.15e-44 | FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_d6f15d81fbbd2718729961da22504a9d | p@chr6:51525810..51525817, + |
| 9.78e-40 | FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_0ca45fb336d18077e3a1ec148f47d577 | p@chr19:4876870..4876880, - |
| 9.78e-40 | FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_0ca45fb336d18077e3a1ec148f47d577 | p@chr19:4876870..4876880, - |
| 1.15e-39 | FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_ae059f7786c8378b717a3109bdd3ab12 | p@chr1:174140324..174140335, - |
| 1.15e-39 | FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_ae059f7786c8378b717a3109bdd3ab12 | p@chr11:67063327..67063335, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_ae059f7786c8378b717a3109bdd3ab12 | p@chr16:24096441..24096449, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_ae059f7786c8378b717a3109bdd3ab12 | p@chr6:4490674..4490679, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_ae059f7786c8378b717a3109bdd3ab12 | p@chr6:4490674..4490679, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_ae059f7786c8378b717a3109bdd3ab12 | p@chr11:67063327..67063335, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_ae059f7786c8378b717a3109bdd3ab12 | p@chr16:24096441..24096449, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_ae059f7786c8378b717a3109bdd3ab12 | p@chr1:174140324..174140335, - |
| 1.55e-39 | FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_4fe09402e7c4752dab6e6fd0ff3c7770 | p@chr1:174143249..174143260, - |
| 1.55e-39 | FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_4fe09402e7c4752dab6e6fd0ff3c7770 | p@chr1:174143249..174143260, - |
| 3.03e-39 | FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_7629cf08ab541e3f9e10f4d0b157262d | p@chr6:51525869..51525891, + |
| 3.03e-39 | FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_7629cf08ab541e3f9e10f4d0b157262d | p@chr6:51525869..51525891, + |
| 9.31e-39 | FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_659ef86004fd892a929c06d23ab08b53 | p3@Asb16 |
| 9.31e-39 | FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_659ef86004fd892a929c06d23ab08b53 | p3@Asb16 |
| 2.41e-35 | FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_cf26d96b7e6c6111b14c111a52f55f0a | p@chr7:133604286..133604297, - |
| 2.41e-35 | FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_cf26d96b7e6c6111b14c111a52f55f0a | p@chr7:133604286..133604297, - |
| 2.95e-35 | FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_d1135ed66d6887cd2be3d041b84e8169 | p5@Pla2g5 |
| 2.95e-35 | FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_d1135ed66d6887cd2be3d041b84e8169 | p5@Pla2g5 |
| 9.53e-34 | FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_6cd9cc18d3666d06c0d30e476ea3fcb9 | p2@uc009mdq.1 |
| 9.53e-34 | FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_6cd9cc18d3666d06c0d30e476ea3fcb9 | p2@uc009mdq.1 |
| 1.23e-33 | FFCP PHASE2:Mm9::chr2:164773241..164773248,+#_86fffeb612273beb8734d88f7ba9a137 | p3@Mmp9 |
| 1.23e-33 | FFCP PHASE1:Mm9::chr2:164773241..164773248,+#_86fffeb612273beb8734d88f7ba9a137 | p3@Mmp9 |
| 1.58e-33 | FFCP PHASE1:Mm9::chr7:3567707..3567718,-#_54c990d7becef63491bcce7edeb1e1fc | p2@Oscar |
| 1.58e-33 | FFCP PHASE2:Mm9::chr7:3567707..3567718,-#_54c990d7becef63491bcce7edeb1e1fc | p2@Oscar |
| 1.58e-33 | FFCP PHASE2:Mm9::chr1:166815111..166815121,-#_54c990d7becef63491bcce7edeb1e1fc | p@chr1:166815111..166815121, - |
| 1.58e-33 | FFCP PHASE1:Mm9::chr1:166815111..166815121,-#_54c990d7becef63491bcce7edeb1e1fc | p@chr1:166815111..166815121, - |
| 2.04e-33 | FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_bebc21d5ba152c249146b1b6dc9fe6bf | p@chr11:75409652..75409664, + |
| 2.04e-33 | FFCP PHASE1:Mm9::chr9:70799951..70799962,-#_bebc21d5ba152c249146b1b6dc9fe6bf | p4@Lipc |
| 2.04e-33 | FFCP PHASE2:Mm9::chr9:70799951..70799962,-#_bebc21d5ba152c249146b1b6dc9fe6bf | p4@Lipc |
| 2.04e-33 | FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_bebc21d5ba152c249146b1b6dc9fe6bf | p@chr11:75409652..75409664, + |
| 3.38e-33 | FFCP PHASE1:Mm9::chr15:102196702..102196713,-#_b7cc4b51f3f3b9251ce3c2416d7d1477 | p6@Sp7 |
| 3.38e-33 | FFCP PHASE2:Mm9::chr15:102196702..102196713,-#_b7cc4b51f3f3b9251ce3c2416d7d1477 | p6@Sp7 |
| 7.17e-33 | FFCP PHASE2:Mm9::chr18:76271498..76271508,+#_f2308f28212c8ec23b39b9019c965e18 | p@chr18:76271498..76271508, + |
| 7.17e-33 | FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_f2308f28212c8ec23b39b9019c965e18 | p@chr8:126415826..126415839, + |
| 7.17e-33 | FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_f2308f28212c8ec23b39b9019c965e18 | p@chr8:126415826..126415839, + |
| 7.17e-33 | FFCP PHASE1:Mm9::chr18:76271498..76271508,+#_f2308f28212c8ec23b39b9019c965e18 | p@chr18:76271498..76271508, + |
| 2.67e-30 | FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_39a26da5625fec8cf90ec8cb7997af04 | p@chr2:32482387..32482399, + |
| 2.67e-30 | FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_39a26da5625fec8cf90ec8cb7997af04 | p@chr2:32482387..32482399, + |
| 1.1e-29 | FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_eda6d043f3ce88e1a7541cd462edd257 | p@chr12:70396969..70396979, + |
| 1.1e-29 | FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_eda6d043f3ce88e1a7541cd462edd257 | p@chr12:70396969..70396979, + |
| 1.1e-29 | FFCP PHASE2:Mm9::chr15:58649683..58649688,-#_eda6d043f3ce88e1a7541cd462edd257 | p@chr15:58649683..58649688, - |
| 1.1e-29 | FFCP PHASE1:Mm9::chr15:58649683..58649688,-#_eda6d043f3ce88e1a7541cd462edd257 | p@chr15:58649683..58649688, - |
| 1.46e-29 | FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_53f3d788df95943d76c5e6c52937a2ac | p@chr7:133590998..133591009, - |
| 1.46e-29 | FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_53f3d788df95943d76c5e6c52937a2ac | p@chr7:133590998..133591009, - |
| 1.73e-29 | FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_bfccd1413aec515f183203b8c7b25d18 | p2@Myoz3 |
| 1.73e-29 | FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_bfccd1413aec515f183203b8c7b25d18 | p2@Myoz3 |
| 2.42e-29 | FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_a4ed214ea959149798e121629882a5f0 | p2@Myh4 |
| 2.42e-29 | FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_a4ed214ea959149798e121629882a5f0 | p2@Myh4 |
| 7.46e-29 | FFCP PHASE1:Mm9::chr1:57155729..57155740,-#_cbc4f45b969673af746b5d00bc9ae83b | p@chr1:57155729..57155740, - |
| 7.46e-29 | FFCP PHASE2:Mm9::chr1:57155729..57155740,-#_cbc4f45b969673af746b5d00bc9ae83b | p@chr1:57155729..57155740, - |
| 9.26e-29 | FFCP PHASE2:Mm9::chr4:43597258..43597265,-#_a1185a82824efb222c3721c7d94150dc | p1@Msmp |
| 9.26e-29 | FFCP PHASE1:Mm9::chr4:43597258..43597265,-#_a1185a82824efb222c3721c7d94150dc | p1@Msmp |
| 9.26e-29 | FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_a1185a82824efb222c3721c7d94150dc | p@chr11:67056544..67056589, - |
| 9.26e-29 | FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_a1185a82824efb222c3721c7d94150dc | p@chr11:67056544..67056589, - |
| 1.15e-28 | FFCP PHASE2:Mm9::chrY:2858251..2858257,+#_06c623ca0adb59a922e2f0cf0914c0e5 | p@chrY:2858251..2858257, + |
| 1.15e-28 | FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_06c623ca0adb59a922e2f0cf0914c0e5 | p@chr6:90552017..90552024, + |
| 1.15e-28 | FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_06c623ca0adb59a922e2f0cf0914c0e5 | p@chr6:90552017..90552024, + |
| 1.15e-28 | FFCP PHASE1:Mm9::chrY:2858251..2858257,+#_06c623ca0adb59a922e2f0cf0914c0e5 | p@chrY:2858251..2858257, + |
| 1.43e-28 | FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_a8b20210e7659527d11f2a17f470946d | p@chr6:34436258..34436292, + |
| 1.43e-28 | FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_a8b20210e7659527d11f2a17f470946d | p@chr6:34436258..34436292, + |
| 2.2e-28 | FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_bf756eb690964931f03443700bac092f | p@chr11:67069796..67069817, - |
| 2.2e-28 | FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_bf756eb690964931f03443700bac092f | p@chr11:67069796..67069817, - |
| 2.72e-28 | FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_10f6f8597d81994ef24c0b40c8a44c45 | p@chr8:107702369..107702386, + |
| 2.72e-28 | FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_10f6f8597d81994ef24c0b40c8a44c45 | p@chr8:107702369..107702386, + |
| 3.45e-28 | FFCP PHASE1:Mm9::chr18:78254135..78254146,-#_03ad116cf48353acde1b6685f97902f9 | p1@Siglec15 |
| 3.45e-28 | FFCP PHASE2:Mm9::chr18:78254135..78254146,-#_03ad116cf48353acde1b6685f97902f9 | p1@Siglec15 |
| 6.5e-28 | FFCP PHASE2:Mm9::chr7:133591490..133591500,-#_f894085b132c68e962b8e7fab821dade | p6@Atp2a1 |
| 6.5e-28 | FFCP PHASE1:Mm9::chr7:133591490..133591500,-#_f894085b132c68e962b8e7fab821dade | p6@Atp2a1 |
| 8.9e-28 | FFCP PHASE2:Mm9::chr7:133591156..133591165,-#_58179346c1496340c6c595b3b145d014 | p7@Atp2a1 |
| 8.9e-28 | FFCP PHASE1:Mm9::chr7:133591156..133591165,-#_58179346c1496340c6c595b3b145d014 | p7@Atp2a1 |
| 1.42e-27 | FFCP PHASE2:Mm9::chr7:133600635..133600663,+#_68a8637199c2930dd0c20bcd586dc7d0 | p@chr7:133600635..133600663, + |
| 1.42e-27 | FFCP PHASE1:Mm9::chr7:133600635..133600663,+#_68a8637199c2930dd0c20bcd586dc7d0 | p@chr7:133600635..133600663, + |
| 1.42e-27 | FFCP PHASE2:Mm9::chr7:133592162..133592188,-#_68a8637199c2930dd0c20bcd586dc7d0 | p@chr7:133592162..133592188, - |
| 1.42e-27 | FFCP PHASE1:Mm9::chr7:133592162..133592188,-#_68a8637199c2930dd0c20bcd586dc7d0 | p@chr7:133592162..133592188, - |
| 6.75e-27 | FFCP PHASE2:Mm9::chr11:94837662..94837673,-#_0dbcfc56036d52356f9833d0e7c3ea67 | p4@Sgca |
| 6.75e-27 | FFCP PHASE1:Mm9::chr11:94837662..94837673,-#_0dbcfc56036d52356f9833d0e7c3ea67 | p4@Sgca |
| 1.66e-26 | FFCP PHASE1:Mm9::chr5:104754379..104754387,+#_30295d72a0115907f5cb907c89f3246f | p1@Mepe |
| 1.66e-26 | FFCP PHASE2:Mm9::chr5:104754379..104754387,+#_30295d72a0115907f5cb907c89f3246f | p1@Mepe |
| 3.47e-26 | FFCP PHASE1:Mm9::chr16:32400888..32400899,+#_8c674277ffc3b6f7c42b5e8a2d990911 | p2@Tm4sf19 |
| 3.47e-26 | FFCP PHASE2:Mm9::chr12:81581216..81581231,+#_8c674277ffc3b6f7c42b5e8a2d990911 | p@chr12:81581216..81581231, + |
| 3.47e-26 | FFCP PHASE1:Mm9::chr12:81581216..81581231,+#_8c674277ffc3b6f7c42b5e8a2d990911 | p@chr12:81581216..81581231, + |
| 3.47e-26 | FFCP PHASE2:Mm9::chr16:32400888..32400899,+#_8c674277ffc3b6f7c42b5e8a2d990911 | p2@Tm4sf19 |
| 1.12e-25 | FFCP PHASE2:Mm9::chr17:34176173..34176200,+#_e378baa4e3fcca90270796a496b61ca0 | p5@Col11a2 |
| 1.12e-25 | FFCP PHASE1:Mm9::chr15:97806574..97806585,-#_e378baa4e3fcca90270796a496b61ca0 | p@chr15:97806574..97806585, - |
| 1.12e-25 | FFCP PHASE2:Mm9::chr15:97806574..97806585,-#_e378baa4e3fcca90270796a496b61ca0 | p@chr15:97806574..97806585, - |
| 1.12e-25 | FFCP PHASE1:Mm9::chr17:34176173..34176200,+#_e378baa4e3fcca90270796a496b61ca0 | p5@Col11a2 |
| 1.36e-25 | FFCP PHASE2:Mm9::chr2:180890942..180890956,-#_af420af95f0366303a3d8cb36dd19a1e | p@chr2:180890942..180890956, - |
| 1.36e-25 | FFCP PHASE1:Mm9::chr2:180890942..180890956,-#_af420af95f0366303a3d8cb36dd19a1e | p@chr2:180890942..180890956, - |
