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Revision as of 17:07, 15 June 2012

Name:camera-type eye
Definition:"GO: The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field[FMA]." [GO:0043010, Image:http\://genome.cshlp.org/content/14/8/1555/F1.large.jpg, Image:http\://www.pnas.org/content/94/6/2098/F1.large.jpg]
Xrefs:
links:

AAO:0010340
BTO:0004688
EHDAA:936
EHDAA2:0000484
FMA:12513
FMA:54448
MA:0000261
ncithesaurus:Eye
NIF_GrossAnatomy:birnlex_1169
OpenCyc:Mx8Ngx4rwKSh9pwpEbGdrcN5Y29ycB4rvVil5pwpEbGdrcN5Y29ycB4rvViTvpwpEbGdrcN5Y29ycA
TAO:0000107
XAO:0000179

ZFA:0000107
Synonyms: "eyeball" EXACT [FMA:12513]
"regio orbitalis" EXACT [FMA:54448, FMA:TA]
"vertebrate eye" NARROW []
Comments:FMA distinguishes Eye (subdivision of face) from Eyeball (organ). Here we are referring to the organ but we also include Eye as being subsumed
Alt_id: UBERON:FMA_12513-MIAA_0000283-XAO_0000181
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000047(simple eye),UBERON:0004121(ectoderm-derived structure)
develops_from:UBERON:0003071(eye primordium),UBERON:0003072(optic cup)
part_of:UBERON:0004088(ocular region)



Children

derives from:FF:0010054 (human eye - fetal sample)
part of:UBERON:0002203 (vasculature of eye),UBERON:0003269 (skeletal muscle tissue of eye),UBERON:0003314 (eye mesenchyme),UBERON:0004277 (eye muscle),UBERON:0005427 (corneal primordium),UBERON:0005606 (hyaloid cavity),UBERON:0005908 (conjunctival sac),UBERON:0005969 (reticulum trabeculare),UBERON:0006311 (chamber of eyeball),UBERON:0006312 (ocular refractive media),UBERON:0010230 (eyeball of camera-type eye),UBERON:0010409 (eye surface),UBERON:0015808 (eye epithelium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000019 (camera-type eye), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.31e-86FFCP PHASE1:Mm9::chr2:90827760..90827769,+#_626a90ad5c2d1952a7320859cfd962b4p6@Celf1
1.31e-86FFCP PHASE1:Mm9::chr17:31818106..31818119,+#_626a90ad5c2d1952a7320859cfd962b4p@chr17:31818106..31818119, +
1.31e-86FFCP PHASE1:Mm9::chr14:118451218..118451221,-#_626a90ad5c2d1952a7320859cfd962b4p4@Dct
1.31e-86FFCP PHASE1:Mm9::chr16:21743134..21743139,-#_626a90ad5c2d1952a7320859cfd962b4p@chr16:21743134..21743139, -
1.31e-86FFCP PHASE1:Mm9::chr10:127668442..127668453,+#_626a90ad5c2d1952a7320859cfd962b4p@chr10:127668442..127668453, +
1.31e-86FFCP PHASE2:Mm9::chr17:31817987..31818013,+#_626a90ad5c2d1952a7320859cfd962b4p@chr17:31817987..31818013, +
1.31e-86FFCP PHASE2:Mm9::chr9:89697580..89697585,-#_626a90ad5c2d1952a7320859cfd962b4p1@Mir184
1.31e-86FFCP PHASE2:Mm9::chr14:118451218..118451221,-#_626a90ad5c2d1952a7320859cfd962b4p4@Dct
1.31e-86FFCP PHASE1:Mm9::chr4:133799669..133799683,+#_626a90ad5c2d1952a7320859cfd962b4p1@E130218I03Rik
1.31e-86FFCP PHASE1:Mm9::chr17:31815126..31815139,-#_626a90ad5c2d1952a7320859cfd962b4p@chr17:31815126..31815139, -
1.31e-86FFCP PHASE2:Mm9::chr11:3622192..3622225,-#_626a90ad5c2d1952a7320859cfd962b4p3@Osbp2
1.31e-86FFCP PHASE1:Mm9::chr10:67364011..67364018,-#_626a90ad5c2d1952a7320859cfd962b4p5@Zfp365
1.31e-86FFCP PHASE2:Mm9::chr2:90827760..90827769,+#_626a90ad5c2d1952a7320859cfd962b4p6@Celf1
1.31e-86FFCP PHASE2:Mm9::chr17:31818263..31818276,+#_626a90ad5c2d1952a7320859cfd962b4p@chr17:31818263..31818276, +
1.31e-86FFCP PHASE1:Mm9::chr11:3622163..3622187,-#_626a90ad5c2d1952a7320859cfd962b4p8@Osbp2
1.31e-86FFCP PHASE1:Mm9::chr9:89697580..89697585,-#_626a90ad5c2d1952a7320859cfd962b4p1@Mir184
1.31e-86FFCP PHASE2:Mm9::chr11:77532391..77532408,-#_626a90ad5c2d1952a7320859cfd962b4p@chr11:77532391..77532408, -
1.31e-86FFCP PHASE1:Mm9::chr11:77532391..77532408,-#_626a90ad5c2d1952a7320859cfd962b4p@chr11:77532391..77532408, -
1.31e-86FFCP PHASE1:Mm9::chr17:31817987..31818013,+#_626a90ad5c2d1952a7320859cfd962b4p@chr17:31817987..31818013, +
1.31e-86FFCP PHASE2:Mm9::chr10:67364011..67364018,-#_626a90ad5c2d1952a7320859cfd962b4p5@Zfp365
1.31e-86FFCP PHASE2:Mm9::chr11:77532283..77532316,-#_626a90ad5c2d1952a7320859cfd962b4p@chr11:77532283..77532316, -
1.31e-86FFCP PHASE1:Mm9::chr11:3622192..3622225,-#_626a90ad5c2d1952a7320859cfd962b4p3@Osbp2
1.31e-86FFCP PHASE2:Mm9::chr17:31815126..31815139,-#_626a90ad5c2d1952a7320859cfd962b4p@chr17:31815126..31815139, -
1.31e-86FFCP PHASE2:Mm9::chr10:127668442..127668453,+#_626a90ad5c2d1952a7320859cfd962b4p@chr10:127668442..127668453, +
1.31e-86FFCP PHASE2:Mm9::chr17:31818106..31818119,+#_626a90ad5c2d1952a7320859cfd962b4p@chr17:31818106..31818119, +
1.31e-86FFCP PHASE2:Mm9::chr16:21743134..21743139,-#_626a90ad5c2d1952a7320859cfd962b4p@chr16:21743134..21743139, -
1.31e-86FFCP PHASE2:Mm9::chr3:129525389..129525400,-#_626a90ad5c2d1952a7320859cfd962b4p@chr3:129525389..129525400, -
1.31e-86FFCP PHASE1:Mm9::chr3:129525389..129525400,-#_626a90ad5c2d1952a7320859cfd962b4p@chr3:129525389..129525400, -
1.31e-86FFCP PHASE2:Mm9::chr4:133799669..133799683,+#_626a90ad5c2d1952a7320859cfd962b4p1@E130218I03Rik
1.31e-86FFCP PHASE1:Mm9::chr17:31818263..31818276,+#_626a90ad5c2d1952a7320859cfd962b4p@chr17:31818263..31818276, +
1.31e-86FFCP PHASE2:Mm9::chr11:3622163..3622187,-#_626a90ad5c2d1952a7320859cfd962b4p8@Osbp2
1.31e-86FFCP PHASE1:Mm9::chr11:77532283..77532316,-#_626a90ad5c2d1952a7320859cfd962b4p@chr11:77532283..77532316, -
2.3e-78FFCP PHASE2:Mm9::chr10:127668637..127668650,+#_3415ab3584829ab0db6dca4ced299645p3@LOC100504989, p3@Timeless
2.3e-78FFCP PHASE1:Mm9::chr10:127668637..127668650,+#_3415ab3584829ab0db6dca4ced299645p3@LOC100504989, p3@Timeless
2.3e-78FFCP PHASE1:Mm9::chr7:64675015..64675028,+#_3415ab3584829ab0db6dca4ced299645p@chr7:64675015..64675028, +
2.3e-78FFCP PHASE2:Mm9::chr7:64675015..64675028,+#_3415ab3584829ab0db6dca4ced299645p@chr7:64675015..64675028, +
2.82e-78FFCP PHASE1:Mm9::chr6:97891135..97891147,+#_60ca0a6a119ac7220af09706e0abacccp@chr6:97891135..97891147, +
2.82e-78FFCP PHASE1:Mm9::chr2:105509100..105509107,+#_60ca0a6a119ac7220af09706e0abacccp6@Pax6
2.82e-78FFCP PHASE2:Mm9::chr2:105509100..105509107,+#_60ca0a6a119ac7220af09706e0abacccp6@Pax6
2.82e-78FFCP PHASE2:Mm9::chr6:97891135..97891147,+#_60ca0a6a119ac7220af09706e0abacccp@chr6:97891135..97891147, +
3.46e-78FFCP PHASE1:Mm9::chr14:49498256..49498278,+#_75d1a099f83f5854bc5de7b03ca8849ep1@4933429O19Rik
3.46e-78FFCP PHASE2:Mm9::chr14:49498256..49498278,+#_75d1a099f83f5854bc5de7b03ca8849ep1@4933429O19Rik
4.97e-77FFCP PHASE1:Mm9::chr17:31816514..31816526,+#_46b679f70813f237f6c8f4c5c2c14211p@chr17:31816514..31816526, +
4.97e-77FFCP PHASE1:Mm9::chr1:38092538..38092550,+#_46b679f70813f237f6c8f4c5c2c14211p@chr1:38092538..38092550, +
4.97e-77FFCP PHASE2:Mm9::chr7:29477874..29477889,+#_46b679f70813f237f6c8f4c5c2c14211p6@Fbxo27
4.97e-77FFCP PHASE1:Mm9::chr4:19208009..19208054,+#_46b679f70813f237f6c8f4c5c2c14211p1@Cngb3
4.97e-77FFCP PHASE1:Mm9::chr5:112690636..112690656,+#_46b679f70813f237f6c8f4c5c2c14211p@chr5:112690636..112690656, +
4.97e-77FFCP PHASE2:Mm9::chr17:31818215..31818239,-#_46b679f70813f237f6c8f4c5c2c14211p@chr17:31818215..31818239, -
4.97e-77FFCP PHASE2:Mm9::chr4:19208009..19208054,+#_46b679f70813f237f6c8f4c5c2c14211p1@Cngb3
4.97e-77FFCP PHASE2:Mm9::chr5:112675556..112675574,-#_46b679f70813f237f6c8f4c5c2c14211p@chr5:112675556..112675574, -
4.97e-77FFCP PHASE1:Mm9::chr3:129525405..129525428,-#_46b679f70813f237f6c8f4c5c2c14211p1@Rrh
4.97e-77FFCP PHASE2:Mm9::chr9:107964319..107964338,-#_46b679f70813f237f6c8f4c5c2c14211p11@Rnf123
4.97e-77FFCP PHASE1:Mm9::chr5:112681470..112681483,-#_46b679f70813f237f6c8f4c5c2c14211p@chr5:112681470..112681483, -
4.97e-77FFCP PHASE1:Mm9::chr5:112698505..112698537,-#_46b679f70813f237f6c8f4c5c2c14211p@chr5:112698505..112698537, -
4.97e-77FFCP PHASE2:Mm9::chr3:129525405..129525428,-#_46b679f70813f237f6c8f4c5c2c14211p1@Rrh
4.97e-77FFCP PHASE2:Mm9::chr10:93761330..93761358,-#_46b679f70813f237f6c8f4c5c2c14211p1@Gm4792
4.97e-77FFCP PHASE2:Mm9::chr1:38092602..38092616,+#_46b679f70813f237f6c8f4c5c2c14211p@chr1:38092602..38092616, +
4.97e-77FFCP PHASE2:Mm9::chr14:35413322..35413333,-#_46b679f70813f237f6c8f4c5c2c14211p1@Opn4
4.97e-77FFCP PHASE1:Mm9::chr2:93906955..93906973,-#_46b679f70813f237f6c8f4c5c2c14211p2@Hsd17b12
4.97e-77FFCP PHASE2:Mm9::chr5:112698505..112698537,-#_46b679f70813f237f6c8f4c5c2c14211p@chr5:112698505..112698537, -
4.97e-77FFCP PHASE1:Mm9::chr5:112690744..112690755,+#_46b679f70813f237f6c8f4c5c2c14211p@chr5:112690744..112690755, +
4.97e-77FFCP PHASE1:Mm9::chr14:35413322..35413333,-#_46b679f70813f237f6c8f4c5c2c14211p1@Opn4
4.97e-77FFCP PHASE2:Mm9::chr1:65147224..65147236,-#_46b679f70813f237f6c8f4c5c2c14211p@chr1:65147224..65147236, -
4.97e-77FFCP PHASE1:Mm9::chr1:65147224..65147236,-#_46b679f70813f237f6c8f4c5c2c14211p@chr1:65147224..65147236, -
4.97e-77FFCP PHASE2:Mm9::chr5:112688342..112688357,+#_46b679f70813f237f6c8f4c5c2c14211p@chr5:112688342..112688357, +
4.97e-77FFCP PHASE1:Mm9::chr17:31816584..31816600,+#_46b679f70813f237f6c8f4c5c2c14211p@chr17:31816584..31816600, +
4.97e-77FFCP PHASE2:Mm9::chr14:52730585..52730607,+#_46b679f70813f237f6c8f4c5c2c14211p1@Rpgrip1
4.97e-77FFCP PHASE1:Mm9::chr17:31818629..31818644,+#_46b679f70813f237f6c8f4c5c2c14211p@chr17:31818629..31818644, +
4.97e-77FFCP PHASE2:Mm9::chr5:113506190..113506202,-#_46b679f70813f237f6c8f4c5c2c14211p@chr5:113506190..113506202, -
4.97e-77FFCP PHASE1:Mm9::chr5:113506006..113506025,-#_46b679f70813f237f6c8f4c5c2c14211p@chr5:113506006..113506025, -
4.97e-77FFCP PHASE1:Mm9::chr3:129525435..129525448,-#_46b679f70813f237f6c8f4c5c2c14211p2@Rrh
4.97e-77FFCP PHASE1:Mm9::chr1:65146997..65147021,-#_46b679f70813f237f6c8f4c5c2c14211p@chr1:65146997..65147021, -
4.97e-77FFCP PHASE2:Mm9::chr1:65149656..65149674,-#_46b679f70813f237f6c8f4c5c2c14211p2@Cryga
4.97e-77FFCP PHASE1:Mm9::chr1:65149656..65149674,-#_46b679f70813f237f6c8f4c5c2c14211p2@Cryga
4.97e-77FFCP PHASE2:Mm9::chr5:112690963..112690994,+#_46b679f70813f237f6c8f4c5c2c14211p@chr5:112690963..112690994, +
4.97e-77FFCP PHASE2:Mm9::chr3:129525435..129525448,-#_46b679f70813f237f6c8f4c5c2c14211p2@Rrh
4.97e-77FFCP PHASE1:Mm9::chr17:31818215..31818239,-#_46b679f70813f237f6c8f4c5c2c14211p@chr17:31818215..31818239, -
4.97e-77FFCP PHASE1:Mm9::chr5:112692580..112692595,+#_46b679f70813f237f6c8f4c5c2c14211p@chr5:112692580..112692595, +
4.97e-77FFCP PHASE2:Mm9::chr8:77582172..77582183,+#_46b679f70813f237f6c8f4c5c2c14211p@chr8:77582172..77582183, +
4.97e-77FFCP PHASE1:Mm9::chr10:127668480..127668491,+#_46b679f70813f237f6c8f4c5c2c14211p@chr10:127668480..127668491, +
4.97e-77FFCP PHASE2:Mm9::chr7:28282354..28282365,+#_46b679f70813f237f6c8f4c5c2c14211p@chr7:28282354..28282365, +
4.97e-77FFCP PHASE2:Mm9::chr5:112686483..112686494,+#_46b679f70813f237f6c8f4c5c2c14211p@chr5:112686483..112686494, +
4.97e-77FFCP PHASE2:Mm9::chr5:113507470..113507483,-#_46b679f70813f237f6c8f4c5c2c14211p@chr5:113507470..113507483, -
4.97e-77FFCP PHASE2:Mm9::chr5:112692580..112692595,+#_46b679f70813f237f6c8f4c5c2c14211p@chr5:112692580..112692595, +
4.97e-77FFCP PHASE1:Mm9::chr5:112688342..112688357,+#_46b679f70813f237f6c8f4c5c2c14211p@chr5:112688342..112688357, +
4.97e-77FFCP PHASE2:Mm9::chr17:31816514..31816526,+#_46b679f70813f237f6c8f4c5c2c14211p@chr17:31816514..31816526, +
4.97e-77FFCP PHASE2:Mm9::chr10:127668686..127668697,+#_46b679f70813f237f6c8f4c5c2c14211p4@LOC100504989, p4@Timeless
4.97e-77FFCP PHASE1:Mm9::chr1:152166537..152166579,+#_46b679f70813f237f6c8f4c5c2c14211p1@Pdc
4.97e-77FFCP PHASE1:Mm9::chr17:31817947..31817965,+#_46b679f70813f237f6c8f4c5c2c14211p@chr17:31817947..31817965, +
4.97e-77FFCP PHASE1:Mm9::chr5:112690963..112690994,+#_46b679f70813f237f6c8f4c5c2c14211p@chr5:112690963..112690994, +
4.97e-77FFCP PHASE2:Mm9::chr1:65146997..65147021,-#_46b679f70813f237f6c8f4c5c2c14211p@chr1:65146997..65147021, -
4.97e-77FFCP PHASE1:Mm9::chr6:115162924..115162933,+#_46b679f70813f237f6c8f4c5c2c14211p@chr6:115162924..115162933, +
4.97e-77FFCP PHASE2:Mm9::chr1:38092538..38092550,+#_46b679f70813f237f6c8f4c5c2c14211p@chr1:38092538..38092550, +
4.97e-77FFCP PHASE1:Mm9::chr10:93761330..93761358,-#_46b679f70813f237f6c8f4c5c2c14211p1@Gm4792
4.97e-77FFCP PHASE1:Mm9::chr3:129525452..129525463,-#_46b679f70813f237f6c8f4c5c2c14211p3@Rrh
4.97e-77FFCP PHASE2:Mm9::chr11:77532270..77532280,-#_46b679f70813f237f6c8f4c5c2c14211p@chr11:77532270..77532280, -
4.97e-77FFCP PHASE1:Mm9::chr8:77582172..77582183,+#_46b679f70813f237f6c8f4c5c2c14211p@chr8:77582172..77582183, +
4.97e-77FFCP PHASE2:Mm9::chr17:31816584..31816600,+#_46b679f70813f237f6c8f4c5c2c14211p@chr17:31816584..31816600, +
4.97e-77FFCP PHASE2:Mm9::chr5:113504891..113504916,-#_46b679f70813f237f6c8f4c5c2c14211p@chr5:113504891..113504916, -
4.97e-77FFCP PHASE2:Mm9::chr3:129525452..129525463,-#_46b679f70813f237f6c8f4c5c2c14211p3@Rrh

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