UBERON:0005721: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0005721
|name=pronephric mesoderm
|namespace=
|def=
|xref=AAO:0011090;;EFO:0003479;;TAO:0000067;;VHOG:0001239;;XAO:0000264;;ZFA:0000067
|is_a=UBERON:...") |
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|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
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Revision as of 17:23, 15 June 2012
| Name: | pronephric mesoderm | ||
|---|---|---|---|
| Xrefs: |
| ||
| Synonyms: |
"pronephric anlage" RELATED [XAO:0000264] "pronephric bulge" RELATED [XAO:0000264] "pronephric mesenchyme" RELATED [XAO:0000264] "pronephric primordium" RELATED [XAO:0000264] | ||
| Comments: | the intermediate mesoderm of the chick embryo acquires its ability to form kidneys through its interactions with the paraxial mesoderm [ISBN:9780878932504 "Developmental Biology", PMID:10720431 "Signals from trunk paraxial mesoderm induce pronephros formation in chick intermediate mesoderm"]. These interactions induce the expression of TFs including Lim1, Pax2 and Pax6 that cause the intermediate mesoderm to form the kidney |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000926(mesoderm),UBERON:0004120(mesoderm-derived structure) |
|---|---|
| develops_from: | UBERON:0007297(presumptive pronephric mesoderm) |
| part_of: | UBERON:0003064(intermediate mesoderm) |
Children
| develops from: | UBERON:0002120 (pronephros),UBERON:0003060 (pronephric duct) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005721 (pronephric mesoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.83e-65 | FFCP PHASE2:Mm9::chr14:63665679..63665688,+#_5b4f10e1e871e010ff8b4325fc13cddc | p4@Defb42 |
| 2.83e-65 | FFCP PHASE2:Mm9::chr14:63585028..63585037,-#_5b4f10e1e871e010ff8b4325fc13cddc | p@chr14:63585028..63585037, - |
| 2.83e-65 | FFCP PHASE1:Mm9::chr14:63585028..63585037,-#_5b4f10e1e871e010ff8b4325fc13cddc | p@chr14:63585028..63585037, - |
| 2.83e-65 | FFCP PHASE1:Mm9::chr14:63665679..63665688,+#_5b4f10e1e871e010ff8b4325fc13cddc | p4@Defb42 |
| 2.83e-65 | FFCP PHASE1:Mm9::chr10:127470655..127470664,+#_5b4f10e1e871e010ff8b4325fc13cddc | p@chr10:127470655..127470664, + |
| 2.83e-65 | FFCP PHASE2:Mm9::chr10:127470655..127470664,+#_5b4f10e1e871e010ff8b4325fc13cddc | p@chr10:127470655..127470664, + |
| 2.83e-65 | FFCP PHASE2:Mm9::chr18:44264202..44264213,+#_5b4f10e1e871e010ff8b4325fc13cddc | p4@Spink12 |
| 2.83e-65 | FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_5b4f10e1e871e010ff8b4325fc13cddc | p4@Spink12 |
| 3.99e-50 | FFCP PHASE1:Mm9::chr2:152388713..152388729,+#_68c9c90a59166e7c7e8ce48d580d375c | p@chr2:152388713..152388729, + |
| 3.99e-50 | FFCP PHASE2:Mm9::chr2:152388713..152388729,+#_68c9c90a59166e7c7e8ce48d580d375c | p@chr2:152388713..152388729, + |
| 5.6e-50 | FFCP PHASE1:Hg19::chr2:120409486..120409492,+#_1b592bcb80aaa8c83d159ca2476524ae | p@chr2:120409486..120409492, + |
| 5.6e-50 | FFCP PHASE2:Hg19::chr2:120409486..120409492,+#_1b592bcb80aaa8c83d159ca2476524ae | p@chr2:120409486..120409492, + |
| 1.6e-49 | FFCP PHASE2:Mm9::chr14:63585048..63585062,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p@chr14:63585048..63585062, - |
| 1.6e-49 | FFCP PHASE2:Mm9::chr11:76361451..76361499,+#_f665ec65cf1dea324fcbc7a9bfae1e95 | p@chr11:76361451..76361499, + |
| 1.6e-49 | FFCP PHASE2:Mm9::chr9:35597686..35597691,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p2@D730048I06Rik, p2@Gm17727 |
| 1.6e-49 | FFCP PHASE1:Mm9::chr9:35597686..35597691,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p2@D730048I06Rik, p2@Gm17727 |
| 1.6e-49 | FFCP PHASE1:Mm9::chr14:63585048..63585062,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p@chr14:63585048..63585062, - |
| 1.6e-49 | FFCP PHASE1:Mm9::chr11:105797641..105797656,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p4@Cyb561 |
| 1.6e-49 | FFCP PHASE2:Mm9::chr11:105797641..105797656,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p4@Cyb561 |
| 1.6e-49 | FFCP PHASE2:Mm9::chr14:63585020..63585025,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p@chr14:63585020..63585025, - |
| 1.6e-49 | FFCP PHASE1:Mm9::chr11:76361451..76361499,+#_f665ec65cf1dea324fcbc7a9bfae1e95 | p@chr11:76361451..76361499, + |
| 1.6e-49 | FFCP PHASE1:Mm9::chr14:63585020..63585025,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p@chr14:63585020..63585025, - |
| 2.33e-49 | FFCP PHASE1:Mm9::chr9:26611246..26611253,-#_5c9c897ce680f33de396c5ef1c1a8ca6 | p@chr9:26611246..26611253, - |
| 2.33e-49 | FFCP PHASE1:Mm9::chr14:63627556..63627564,-#_5c9c897ce680f33de396c5ef1c1a8ca6 | p@chr14:63627556..63627564, - |
| 2.33e-49 | FFCP PHASE2:Mm9::chr9:26611246..26611253,-#_5c9c897ce680f33de396c5ef1c1a8ca6 | p@chr9:26611246..26611253, - |
| 2.33e-49 | FFCP PHASE2:Mm9::chr9:26732045..26732085,+#_5c9c897ce680f33de396c5ef1c1a8ca6 | p@chr9:26732045..26732085, + |
| 2.33e-49 | FFCP PHASE2:Mm9::chr14:51734043..51734054,+#_5c9c897ce680f33de396c5ef1c1a8ca6 | p2@Eddm3b |
| 2.33e-49 | FFCP PHASE1:Mm9::chr9:26732045..26732085,+#_5c9c897ce680f33de396c5ef1c1a8ca6 | p@chr9:26732045..26732085, + |
| 2.33e-49 | FFCP PHASE1:Mm9::chr14:51734043..51734054,+#_5c9c897ce680f33de396c5ef1c1a8ca6 | p2@Eddm3b |
| 2.33e-49 | FFCP PHASE2:Mm9::chr14:63627556..63627564,-#_5c9c897ce680f33de396c5ef1c1a8ca6 | p@chr14:63627556..63627564, - |
| 3.4e-49 | FFCP PHASE2:Mm9::chr2:69981027..69981032,+#_a87d0bddc857d252f012012cedd7c844 | p@chr2:69981027..69981032, + |
| 3.4e-49 | FFCP PHASE1:Mm9::chr2:69981027..69981032,+#_a87d0bddc857d252f012012cedd7c844 | p@chr2:69981027..69981032, + |
| 9.75e-45 | FFCP PHASE1:Hg19::chr10:102505655..102505689,+#_79579161d4c4b30afc39427ef7e168db | p10@PAX2 |
| 9.75e-45 | FFCP PHASE2:Hg19::chr1:172416185..172416189,-#_79579161d4c4b30afc39427ef7e168db | p@chr1:172416185..172416189, - |
| 9.75e-45 | FFCP PHASE2:Hg19::chr14:68644730..68644737,+#_79579161d4c4b30afc39427ef7e168db | p@chr14:68644730..68644737, + |
| 9.75e-45 | FFCP PHASE1:Hg19::chr14:68644730..68644737,+#_79579161d4c4b30afc39427ef7e168db | p@chr14:68644730..68644737, + |
| 9.75e-45 | FFCP PHASE2:Hg19::chr10:102505655..102505689,+#_79579161d4c4b30afc39427ef7e168db | p10@PAX2 |
| 9.75e-45 | FFCP PHASE1:Hg19::chr1:172416185..172416189,-#_79579161d4c4b30afc39427ef7e168db | p@chr1:172416185..172416189, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr8:19141371..19141383,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr8:19141371..19141383, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr2:167688595..167688624,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr2:167688595..167688624, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr18:44261480..44261486,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr18:44261480..44261486, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr14:52542661..52542668,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p3@Rnase13 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr13:21379372..21379404,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr13:21379372..21379404, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr13:21383212..21383225,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr13:21383212..21383225, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr11:20817297..20817313,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr11:20817297..20817313, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr8:126604677..126604701,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr8:126604677..126604701, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chrX:20419453..20419476,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chrX:20419453..20419476, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr4:123977104..123977120,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p1@ENSMUST00000139012, p1@uc008uqo.1 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr1:155722142..155722175,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr1:155722142..155722175, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chrX:50280181..50280192,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chrX:50280181..50280192, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr1:11079838..11079844,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr1:11079838..11079844, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr12:114385720..114385732,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr12:114385720..114385732, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr8:19141471..19141518,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr8:19141471..19141518, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr13:24270118..24270122,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr13:24270118..24270122, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr13:21378871..21378901,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr13:21378871..21378901, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr2:152388977..152388983,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr2:152388977..152388983, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr1:192816674..192816714,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr1:192816674..192816714, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr16:43230846..43230884,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr16:43230846..43230884, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr4:40010825..40010844,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr4:40010825..40010844, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr6:83487114..83487124,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr6:83487114..83487124, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr2:152302768..152302774,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p4@Defb20 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr1:87936238..87936249,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr1:87936238..87936249, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chrX:130496260..130496269,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chrX:130496260..130496269, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr8:25706074..25706082,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p3@Ido1 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr2:164434346..164434353,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr2:164434346..164434353, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr1:90155707..90155720,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr1:90155707..90155720, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr10:127470322..127470326,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr10:127470322..127470326, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr9:26610184..26610191,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p4@Glb1l2 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr4:106730107..106730125,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr4:106730107..106730125, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr2:160573065..160573077,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr2:160573065..160573077, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr1:89597660..89597668,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr1:89597660..89597668, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr11:101959194..101959224,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr11:101959194..101959224, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chrX:75798097..75798101,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chrX:75798097..75798101, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr2:172632171..172632178,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr2:172632171..172632178, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr11:101958844..101958851,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr11:101958844..101958851, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr8:113585667..113585673,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr8:113585667..113585673, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr9:65941913..65941923,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr9:65941913..65941923, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chrX:130496286..130496293,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chrX:130496286..130496293, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr13:21379118..21379120,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr13:21379118..21379120, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr9:35651764..35651782,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p2@9230110F15Rik |
| 4.54e-44 | FFCP PHASE2:Mm9::chr5:31379454..31379466,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr5:31379454..31379466, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr15:72756032..72756041,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr15:72756032..72756041, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr8:22061771..22061777,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p3@Gm6040, p3@LOC100503992 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr1:155697874..155697885,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr1:155697874..155697885, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr1:87936213..87936218,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr1:87936213..87936218, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr14:63611201..63611210,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr14:63611201..63611210, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr13:21379107..21379136,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr13:21379107..21379136, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr10:56515486..56515496,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr10:56515486..56515496, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr9:26611214..26611227,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr9:26611214..26611227, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr7:109379335..109379338,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p21@Pgap2 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr8:96014490..96014496,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr8:96014490..96014496, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr2:25349402..25349409,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p3@Lcn12 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr2:75866210..75866235,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr2:75866210..75866235, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr2:152302813..152302821,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p3@Defb20 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr1:165219453..165219469,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p11@Prrx1 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr16:25752228..25752237,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr16:25752228..25752237, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr14:66521865..66521876,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr14:66521865..66521876, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr17:24865194..24865204,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr17:24865194..24865204, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr4:134893699..134893708,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr4:134893699..134893708, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr2:25348986..25348999,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p4@Lcn12 |
