UBERON:0005721: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0005721
|name=pronephric mesoderm
|namespace=
|def=
|xref=AAO:0011090;;EFO:0003479;;TAO:0000067;;VHOG:0001239;;XAO:0000264;;ZFA:0000067
|is_a=UBERON:...") |
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|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
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Revision as of 17:23, 15 June 2012
| Name: | pronephric mesoderm | ||
|---|---|---|---|
| Xrefs: |
| ||
| Synonyms: |
"pronephric anlage" RELATED [XAO:0000264] "pronephric bulge" RELATED [XAO:0000264] "pronephric mesenchyme" RELATED [XAO:0000264] "pronephric primordium" RELATED [XAO:0000264] | ||
| Comments: | the intermediate mesoderm of the chick embryo acquires its ability to form kidneys through its interactions with the paraxial mesoderm [ISBN:9780878932504 "Developmental Biology", PMID:10720431 "Signals from trunk paraxial mesoderm induce pronephros formation in chick intermediate mesoderm"]. These interactions induce the expression of TFs including Lim1, Pax2 and Pax6 that cause the intermediate mesoderm to form the kidney |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000926(mesoderm),UBERON:0004120(mesoderm-derived structure) |
|---|---|
| develops_from: | UBERON:0007297(presumptive pronephric mesoderm) |
| part_of: | UBERON:0003064(intermediate mesoderm) |
Children
| develops from: | UBERON:0002120 (pronephros),UBERON:0003060 (pronephric duct) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005721 (pronephric mesoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.83e-65 | FFCP PHASE1:Mm9::chr14:63585028..63585037,-#_5b4f10e1e871e010ff8b4325fc13cddc | p@chr14:63585028..63585037, - |
| 2.83e-65 | FFCP PHASE1:Mm9::chr14:63665679..63665688,+#_5b4f10e1e871e010ff8b4325fc13cddc | p4@Defb42 |
| 2.83e-65 | FFCP PHASE2:Mm9::chr18:44264202..44264213,+#_5b4f10e1e871e010ff8b4325fc13cddc | p4@Spink12 |
| 2.83e-65 | FFCP PHASE2:Mm9::chr14:63665679..63665688,+#_5b4f10e1e871e010ff8b4325fc13cddc | p4@Defb42 |
| 2.83e-65 | FFCP PHASE2:Mm9::chr14:63585028..63585037,-#_5b4f10e1e871e010ff8b4325fc13cddc | p@chr14:63585028..63585037, - |
| 2.83e-65 | FFCP PHASE2:Mm9::chr10:127470655..127470664,+#_5b4f10e1e871e010ff8b4325fc13cddc | p@chr10:127470655..127470664, + |
| 2.83e-65 | FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_5b4f10e1e871e010ff8b4325fc13cddc | p4@Spink12 |
| 2.83e-65 | FFCP PHASE1:Mm9::chr10:127470655..127470664,+#_5b4f10e1e871e010ff8b4325fc13cddc | p@chr10:127470655..127470664, + |
| 3.99e-50 | FFCP PHASE2:Mm9::chr2:152388713..152388729,+#_68c9c90a59166e7c7e8ce48d580d375c | p@chr2:152388713..152388729, + |
| 3.99e-50 | FFCP PHASE1:Mm9::chr2:152388713..152388729,+#_68c9c90a59166e7c7e8ce48d580d375c | p@chr2:152388713..152388729, + |
| 5.6e-50 | FFCP PHASE2:Hg19::chr2:120409486..120409492,+#_1b592bcb80aaa8c83d159ca2476524ae | p@chr2:120409486..120409492, + |
| 5.6e-50 | FFCP PHASE1:Hg19::chr2:120409486..120409492,+#_1b592bcb80aaa8c83d159ca2476524ae | p@chr2:120409486..120409492, + |
| 1.6e-49 | FFCP PHASE2:Mm9::chr14:63585048..63585062,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p@chr14:63585048..63585062, - |
| 1.6e-49 | FFCP PHASE2:Mm9::chr9:35597686..35597691,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p2@D730048I06Rik, p2@Gm17727 |
| 1.6e-49 | FFCP PHASE1:Mm9::chr11:105797641..105797656,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p4@Cyb561 |
| 1.6e-49 | FFCP PHASE1:Mm9::chr9:35597686..35597691,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p2@D730048I06Rik, p2@Gm17727 |
| 1.6e-49 | FFCP PHASE1:Mm9::chr14:63585048..63585062,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p@chr14:63585048..63585062, - |
| 1.6e-49 | FFCP PHASE1:Mm9::chr11:76361451..76361499,+#_f665ec65cf1dea324fcbc7a9bfae1e95 | p@chr11:76361451..76361499, + |
| 1.6e-49 | FFCP PHASE2:Mm9::chr11:105797641..105797656,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p4@Cyb561 |
| 1.6e-49 | FFCP PHASE2:Mm9::chr14:63585020..63585025,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p@chr14:63585020..63585025, - |
| 1.6e-49 | FFCP PHASE2:Mm9::chr11:76361451..76361499,+#_f665ec65cf1dea324fcbc7a9bfae1e95 | p@chr11:76361451..76361499, + |
| 1.6e-49 | FFCP PHASE1:Mm9::chr14:63585020..63585025,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p@chr14:63585020..63585025, - |
| 2.33e-49 | FFCP PHASE2:Mm9::chr9:26611246..26611253,-#_5c9c897ce680f33de396c5ef1c1a8ca6 | p@chr9:26611246..26611253, - |
| 2.33e-49 | FFCP PHASE2:Mm9::chr9:26732045..26732085,+#_5c9c897ce680f33de396c5ef1c1a8ca6 | p@chr9:26732045..26732085, + |
| 2.33e-49 | FFCP PHASE1:Mm9::chr9:26611246..26611253,-#_5c9c897ce680f33de396c5ef1c1a8ca6 | p@chr9:26611246..26611253, - |
| 2.33e-49 | FFCP PHASE1:Mm9::chr14:63627556..63627564,-#_5c9c897ce680f33de396c5ef1c1a8ca6 | p@chr14:63627556..63627564, - |
| 2.33e-49 | FFCP PHASE1:Mm9::chr9:26732045..26732085,+#_5c9c897ce680f33de396c5ef1c1a8ca6 | p@chr9:26732045..26732085, + |
| 2.33e-49 | FFCP PHASE2:Mm9::chr14:63627556..63627564,-#_5c9c897ce680f33de396c5ef1c1a8ca6 | p@chr14:63627556..63627564, - |
| 2.33e-49 | FFCP PHASE1:Mm9::chr14:51734043..51734054,+#_5c9c897ce680f33de396c5ef1c1a8ca6 | p2@Eddm3b |
| 2.33e-49 | FFCP PHASE2:Mm9::chr14:51734043..51734054,+#_5c9c897ce680f33de396c5ef1c1a8ca6 | p2@Eddm3b |
| 3.4e-49 | FFCP PHASE1:Mm9::chr2:69981027..69981032,+#_a87d0bddc857d252f012012cedd7c844 | p@chr2:69981027..69981032, + |
| 3.4e-49 | FFCP PHASE2:Mm9::chr2:69981027..69981032,+#_a87d0bddc857d252f012012cedd7c844 | p@chr2:69981027..69981032, + |
| 9.75e-45 | FFCP PHASE1:Hg19::chr14:68644730..68644737,+#_79579161d4c4b30afc39427ef7e168db | p@chr14:68644730..68644737, + |
| 9.75e-45 | FFCP PHASE1:Hg19::chr10:102505655..102505689,+#_79579161d4c4b30afc39427ef7e168db | p10@PAX2 |
| 9.75e-45 | FFCP PHASE2:Hg19::chr1:172416185..172416189,-#_79579161d4c4b30afc39427ef7e168db | p@chr1:172416185..172416189, - |
| 9.75e-45 | FFCP PHASE1:Hg19::chr1:172416185..172416189,-#_79579161d4c4b30afc39427ef7e168db | p@chr1:172416185..172416189, - |
| 9.75e-45 | FFCP PHASE2:Hg19::chr10:102505655..102505689,+#_79579161d4c4b30afc39427ef7e168db | p10@PAX2 |
| 9.75e-45 | FFCP PHASE2:Hg19::chr14:68644730..68644737,+#_79579161d4c4b30afc39427ef7e168db | p@chr14:68644730..68644737, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr7:109379335..109379338,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p21@Pgap2 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr12:16664708..16664723,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr12:16664708..16664723, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr2:164434346..164434353,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr2:164434346..164434353, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr8:96014490..96014496,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr8:96014490..96014496, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr12:110131610..110131621,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p11@Wars |
| 4.54e-44 | FFCP PHASE1:Mm9::chr2:75866210..75866235,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr2:75866210..75866235, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr1:165219453..165219469,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p11@Prrx1 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr16:25752228..25752237,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr16:25752228..25752237, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr4:134893699..134893708,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr4:134893699..134893708, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr9:100350777..100350782,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr9:100350777..100350782, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr13:21378774..21378782,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr13:21378774..21378782, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr9:35651764..35651782,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p2@9230110F15Rik |
| 4.54e-44 | FFCP PHASE1:Mm9::chr15:72756032..72756041,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr15:72756032..72756041, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr15:75347689..75347703,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr15:75347689..75347703, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr8:22061771..22061777,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p3@Gm6040, p3@LOC100503992 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr9:26704579..26704582,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr9:26704579..26704582, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr7:151927980..151927988,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr7:151927980..151927988, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr1:87936213..87936218,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr1:87936213..87936218, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr14:63611201..63611210,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr14:63611201..63611210, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr1:90155923..90155932,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr1:90155923..90155932, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr13:21378968..21378988,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr13:21378968..21378988, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr4:33600466..33600491,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr4:33600466..33600491, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr9:26611214..26611227,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr9:26611214..26611227, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chrX:50280181..50280192,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chrX:50280181..50280192, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr7:75293847..75293851,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr7:75293847..75293851, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr7:75293847..75293851,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr7:75293847..75293851, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr6:118298429..118298448,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr6:118298429..118298448, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr16:22547027..22547063,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr16:22547027..22547063, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr14:66521865..66521876,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr14:66521865..66521876, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr11:101958876..101958883,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr11:101958876..101958883, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr6:83487114..83487124,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr6:83487114..83487124, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr7:56772735..56772741,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr7:56772735..56772741, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr17:73221016..73221031,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr17:73221016..73221031, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr9:70761885..70761895,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr9:70761885..70761895, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr2:25348986..25348999,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p4@Lcn12 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr8:19142604..19142612,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr8:19142604..19142612, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr5:31379477..31379481,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr5:31379477..31379481, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr14:52608712..52608739,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p11@Arhgef40 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr13:21379322..21379338,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr13:21379322..21379338, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr8:19141371..19141383,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr8:19141371..19141383, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr5:31379550..31379559,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr5:31379550..31379559, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr13:23683348..23683398,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr13:23683348..23683398, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr12:110131571..110131579,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p15@Wars |
| 4.54e-44 | FFCP PHASE2:Mm9::chr4:106730107..106730125,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr4:106730107..106730125, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr2:164464249..164464258,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr2:164464249..164464258, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr1:90155966..90155989,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr1:90155966..90155989, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr1:155698166..155698174,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr1:155698166..155698174, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr16:43230846..43230884,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr16:43230846..43230884, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr16:25752183..25752203,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr16:25752183..25752203, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr14:52542711..52542716,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p2@Rnase13 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr1:87922962..87922982,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr1:87922962..87922982, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr8:126604677..126604701,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr8:126604677..126604701, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr14:69116075..69116107,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr14:69116075..69116107, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr2:152290340..152290344,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p2@Defb23 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr14:103837894..103837900,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr14:103837894..103837900, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr14:51734060..51734066,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p5@Eddm3b |
| 4.54e-44 | FFCP PHASE1:Mm9::chr13:21379125..21379144,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr13:21379125..21379144, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr18:44264128..44264135,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p5@Spink12 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr11:101958887..101958896,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr11:101958887..101958896, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr4:33600466..33600491,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr4:33600466..33600491, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr5:31377177..31377184,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr5:31377177..31377184, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr5:75559819..75559830,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr5:75559819..75559830, + |
