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Revision as of 17:16, 15 June 2012

Name:thymus
Definition:"Anatomical structure of largely lymphoid tissue that functions in cell-mediated immunity by being the site where T cells develop." [NLM:thymus, Wikipedia:Thymus]
Xrefs:
links:

AAO:0010548
BTO:0001374
EFO:0000860
EHDAA:9119
EHDAA2:0002017
EMAPA:18768
EV:0100138
FMA:9607
GAID:464
[1]
MA:0000142
MAT:0000080
MESH:A.06.407.850
MIAA:0000080
ncithesaurus:Thymus_Gland
OpenCyc:Mx4rvpIympwpEbGdrcN5Y29ycA
SCTID:118507000
TAO:0001078
VHOG:0000253
XAO:0000163

ZFA:0001078
Synonyms: "thymus gland" EXACT []
Comments:check - a subtype of gland? not in GO. NCIT has thymus and thymus gland. EHDAA2 has ductless gland
Alt_id: UBERON:FMA_9607-MA_0000142-MIAA_0000080-XAO_0000163-ZFA_0001078
Subset: major_organ
organ_slim
uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000077(mixed endoderm/mesoderm-derived structure),UBERON:0002368(endocrine gland),UBERON:0004177(hemopoietic organ),UBERON:0005057(immune organ),UBERON:0005058(hemolymphoid system gland)
develops_from:UBERON:0005562(thymus primordium)
part_of:UBERON:0000949(endocrine system),UBERON:0002390(hematopoietic system),UBERON:0002405(immune system),UBERON:0009113(thymic region)



Children

derives from:FF:0010027 (thymus - adult human sample),FF:0010043 (human thymus - fetal sample),FF:0011280 (mouse thymus- neonate N02 sample),FF:0011304 (mouse thymus- neonate N03 sample),FF:0011329 (mouse thymus- adult sample),FF:0011336 (mouse thymus- embryo E14 sample),FF:0011346 (mouse thymus- embryo E15 sample),FF:0011355 (mouse thymus- embryo E16 sample),FF:0011366 (mouse thymus- embryo E17 sample),FF:0011401 (mouse thymus- neonate N06 sample),FF:0011407 (mouse thymus- neonate N07 sample),FF:0011413 (mouse thymus- neonate N10 sample),FF:0011426 (mouse thymus- neonate N20 sample),FF:0011496 (mouse thymus- neonate N25 sample),FF:0011497 (mouse thymus- neonate N30 sample),FF:0011516 (mouse thymus- embryo E18 sample),FF:0101455 (thymic carcinoma cell sample)
part of:CL:0000809 (double-positive, alpha-beta thymocyte),CL:0000810 (CD4-positive, alpha-beta thymocyte),CL:0000893 (thymocyte),CL:0000894 (DN1 thymic pro-T cell),CL:0002293 (epithelial cell of thymus)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002370 (thymus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
6.94e-147FFCP PHASE2:Hg19::chr14:22928012..22928031,+#_462f201a736866e4e28cae941b0a00fbp3@uc001wea.3, p3@uc010ajt.2, p3@uc010aju.1
6.94e-147FFCP PHASE1:Hg19::chr14:22928012..22928031,+#_462f201a736866e4e28cae941b0a00fbp3@uc001wea.3, p3@uc010ajt.2, p3@uc010aju.1
8.91e-111FFCP PHASE1:Hg19::chr14:22927984..22927999,+#_7cd47fa57bab426debb6602a56d5f41fp4@uc001wea.3, p4@uc010ajt.2, p4@uc010aju.1
8.91e-111FFCP PHASE2:Hg19::chr14:22927984..22927999,+#_7cd47fa57bab426debb6602a56d5f41fp4@uc001wea.3, p4@uc010ajt.2, p4@uc010aju.1
1.55e-98FFCP PHASE1:Hg19::chr2:87018900..87018905,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr2:87018900..87018905, +
1.55e-98FFCP PHASE1:Hg19::chr15:58069758..58069762,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr15:58069758..58069762, +
1.55e-98FFCP PHASE1:Hg19::chr11:36622593..36622605,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr11:36622593..36622605, +
1.55e-98FFCP PHASE1:Hg19::chr12:123636839..123636885,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr12:123636839..123636885, -
1.55e-98FFCP PHASE1:Hg19::chr1:158259849..158259854,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p11@CD1C
1.55e-98FFCP PHASE1:Hg19::chr1:200500161..200500173,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr1:200500161..200500173, -
1.55e-98FFCP PHASE1:Hg19::chr1:204494413..204494420,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p17@MDM4
1.55e-98FFCP PHASE1:Hg19::chr11:6953654..6953661,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p5@ZNF215
1.55e-98FFCP PHASE1:Hg19::chr2:227771357..227771363,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p10@RHBDD1
1.55e-98FFCP PHASE1:Hg19::chr10:11486829..11486836,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr10:11486829..11486836, +
1.55e-98FFCP PHASE1:Hg19::chr2:233184654..233184661,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr2:233184654..233184661, -
1.55e-98FFCP PHASE1:Hg19::chr10:11486877..11486886,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr10:11486877..11486886, +
1.55e-98FFCP PHASE1:Hg19::chr10:115022988..115023001,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr10:115022988..115023001, +
1.55e-98FFCP PHASE1:Hg19::chr10:115023005..115023015,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr10:115023005..115023015, +
1.55e-98FFCP PHASE1:Hg19::chr15:60131355..60131365,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr15:60131355..60131365, -
1.55e-98FFCP PHASE1:Hg19::chr16:74359040..74359071,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr16:74359040..74359071, +
1.55e-98FFCP PHASE1:Hg19::chr10:115023055..115023072,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr10:115023055..115023072, +
1.55e-98FFCP PHASE1:Hg19::chr10:115023094..115023106,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr10:115023094..115023106, +
1.55e-98FFCP PHASE1:Hg19::chr17:76274572..76274581,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p4@ENST00000374945
1.55e-98FFCP PHASE1:Hg19::chr12:48227243..48227269,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr12:48227243..48227269, +
1.55e-98FFCP PHASE1:Hg19::chr3:155273127..155273136,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p4@AK093601
1.55e-98FFCP PHASE1:Hg19::chr12:123634449..123634460,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p25@PITPNM2
1.55e-98FFCP PHASE1:Hg19::chr2:87018380..87018390,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p6@CD8A
1.55e-98FFCP PHASE1:Hg19::chr3:34517538..34517551,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr3:34517538..34517551, +
1.55e-98FFCP PHASE1:Hg19::chr11:36589389..36589398,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr11:36589389..36589398, -
1.55e-98FFCP PHASE1:Hg19::chr17:80866179..80866188,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr17:80866179..80866188, +
1.55e-98FFCP PHASE1:Hg19::chr1:204507243..204507252,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p19@MDM4
1.55e-98FFCP PHASE1:Hg19::chr15:56940722..56940731,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr15:56940722..56940731, +
1.55e-98FFCP PHASE1:Hg19::chr15:58069384..58069408,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr15:58069384..58069408, +
1.55e-98FFCP PHASE1:Hg19::chr1:158226030..158226041,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr1:158226030..158226041, +
1.55e-98FFCP PHASE1:Hg19::chr3:35683004..35683015,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p42@ARPP21
1.55e-98FFCP PHASE1:Hg19::chr1:204494427..204494436,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p15@MDM4
1.55e-98FFCP PHASE1:Hg19::chr1:2084380..2084413,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr1:2084380..2084413, -
1.55e-98FFCP PHASE1:Hg19::chr1:158170478..158170491,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr1:158170478..158170491, -
1.55e-98FFCP PHASE1:Hg19::chr12:133414662..133414671,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr12:133414662..133414671, -
1.55e-98FFCP PHASE1:Hg19::chr20:58830826..58830835,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr20:58830826..58830835, +
1.55e-98FFCP PHASE1:Hg19::chr2:233102726..233102734,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr2:233102726..233102734, +
1.55e-98FFCP PHASE1:Hg19::chr15:57017749..57017755,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr15:57017749..57017755, -
1.55e-98FFCP PHASE1:Hg19::chr1:44035233..44035242,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr1:44035233..44035242, +
1.55e-98FFCP PHASE1:Hg19::chr10:26726728..26726731,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p17@APBB1IP
1.55e-98FFCP PHASE1:Hg19::chr20:30272266..30272271,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr20:30272266..30272271, -
1.55e-98FFCP PHASE1:Hg19::chr20:58830799..58830808,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr20:58830799..58830808, +
1.55e-98FFCP PHASE1:Hg19::chr18:13437980..13437986,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr18:13437980..13437986, +
1.55e-98FFCP PHASE1:Hg19::chr12:47205180..47205187,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr12:47205180..47205187, +
1.55e-98FFCP PHASE1:Hg19::chr2:87017428..87017437,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr2:87017428..87017437, +
1.55e-98FFCP PHASE1:Hg19::chr2:57846504..57846542,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr2:57846504..57846542, +
1.55e-98FFCP PHASE1:Hg19::chr12:123607146..123607168,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr12:123607146..123607168, -
1.55e-98FFCP PHASE1:Hg19::chr1:199026759..199026762,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr1:199026759..199026762, +
1.55e-98FFCP PHASE1:Hg19::chr1:158332631..158332640,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr1:158332631..158332640, +
1.55e-98FFCP PHASE1:Hg19::chr13:99628369..99628374,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr13:99628369..99628374, -
1.55e-98FFCP PHASE1:Hg19::chr3:34517741..34517784,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr3:34517741..34517784, +
1.55e-98FFCP PHASE1:Hg19::chr12:123559773..123559784,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr12:123559773..123559784, -
1.55e-98FFCP PHASE1:Hg19::chr1:158260453..158260459,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr1:158260453..158260459, -
1.55e-98FFCP PHASE1:Hg19::chr15:60131313..60131324,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr15:60131313..60131324, -
1.55e-98FFCP PHASE1:Hg19::chr12:123559708..123559720,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr12:123559708..123559720, -
1.55e-98FFCP PHASE1:Hg19::chr15:99071828..99071840,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr15:99071828..99071840, +
1.55e-98FFCP PHASE1:Hg19::chr1:160643269..160643276,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p5@ENST00000443928
1.55e-98FFCP PHASE1:Hg19::chr12:59432175..59432191,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr12:59432175..59432191, +
1.55e-98FFCP PHASE1:Hg19::chr1:158260649..158260652,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p13@CD1C
1.55e-98FFCP PHASE1:Hg19::chr15:60131337..60131352,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr15:60131337..60131352, -
1.55e-98FFCP PHASE1:Hg19::chr14:98229095..98229108,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p1@ENST00000555187
1.55e-98FFCP PHASE1:Hg19::chr15:56940732..56940741,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr15:56940732..56940741, +
1.55e-98FFCP PHASE1:Hg19::chr14:22942319..22942322,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p4@uc001wec.2
1.55e-98FFCP PHASE1:Hg19::chr3:19007717..19007728,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr3:19007717..19007728, +
1.55e-98FFCP PHASE1:Hg19::chr13:99628347..99628352,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr13:99628347..99628352, -
1.55e-98FFCP PHASE1:Hg19::chr2:57926329..57926337,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr2:57926329..57926337, -
1.55e-98FFCP PHASE1:Hg19::chr3:35682974..35682982,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p45@ARPP21
1.55e-98FFCP PHASE1:Hg19::chr1:44035057..44035068,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr1:44035057..44035068, +
1.55e-98FFCP PHASE1:Hg19::chr2:242080265..242080277,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p20@PASK
1.55e-98FFCP PHASE1:Hg19::chr17:4090402..4090406,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr17:4090402..4090406, -
1.55e-98FFCP PHASE1:Hg19::chr15:58920068..58920073,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr15:58920068..58920073, -
1.55e-98FFCP PHASE1:Hg19::chr2:227771044..227771054,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p9@RHBDD1
1.55e-98FFCP PHASE1:Hg19::chr12:123560793..123560802,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr12:123560793..123560802, +
1.55e-98FFCP PHASE1:Hg19::chr13:99628323..99628332,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr13:99628323..99628332, -
1.55e-98FFCP PHASE1:Hg19::chr12:123560608..123560615,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p24@PITPNM2
1.55e-98FFCP PHASE1:Hg19::chr12:133413547..133413557,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p13@POLE
1.55e-98FFCP PHASE1:Hg19::chr1:55776022..55776029,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr1:55776022..55776029, -
1.55e-98FFCP PHASE1:Hg19::chr12:123627753..123627760,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr12:123627753..123627760, +
1.55e-98FFCP PHASE1:Hg19::chr17:76274646..76274658,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p2@ENST00000374945
1.55e-98FFCP PHASE1:Hg19::chr2:162762361..162762364,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr2:162762361..162762364, +
1.55e-98FFCP PHASE1:Hg19::chr20:58830811..58830825,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr20:58830811..58830825, +
1.55e-98FFCP PHASE1:Hg19::chr15:58069582..58069594,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr15:58069582..58069594, +
1.55e-98FFCP PHASE1:Hg19::chr10:72542272..72542281,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p6@C10orf27
1.55e-98FFCP PHASE1:Hg19::chr1:158301280..158301298,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr1:158301280..158301298, +
1.55e-98FFCP PHASE1:Hg19::chr20:58833004..58833011,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr20:58833004..58833011, +
1.55e-98FFCP PHASE1:Hg19::chr13:99628388..99628399,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr13:99628388..99628399, -
1.55e-98FFCP PHASE1:Hg19::chr16:49633750..49633778,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr16:49633750..49633778, -
1.55e-98FFCP PHASE1:Hg19::chr12:48225126..48225164,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p1@ENST00000548564, p1@ENST00000550720, p1@ENST00000550909
1.55e-98FFCP PHASE1:Hg19::chr1:194245598..194245600,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr1:194245598..194245600, -
1.55e-98FFCP PHASE1:Hg19::chr1:160643289..160643296,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p4@ENST00000443928
1.55e-98FFCP PHASE1:Hg19::chr15:58069597..58069604,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr15:58069597..58069604, +
1.55e-98FFCP PHASE1:Hg19::chr1:158303678..158303720,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr1:158303678..158303720, -
1.55e-98FFCP PHASE1:Hg19::chr1:55776031..55776038,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr1:55776031..55776038, -
1.55e-98FFCP PHASE1:Hg19::chr19:28877072..28877084,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr19:28877072..28877084, -
1.55e-98FFCP PHASE1:Hg19::chr1:32314477..32314482,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr1:32314477..32314482, +
1.55e-98FFCP PHASE1:Hg19::chr11:8954087..8954092,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p1@AB527792

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