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|located_in=
|located_in=
|name=caudate nucleus
|name=caudate nucleus
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0000369;;UBERON:0002435;;UBERON:0005382;;UBERON:0005383
|part_of=UBERON:0000369;;UBERON:0002435;;UBERON:0005382;;UBERON:0005383

Latest revision as of 17:21, 12 September 2014

Name:caudate nucleus
Namespace:FANTOM
Definition:"Nucleus of brain which is an elongated crescent-shaped mass lying parallel and adjacent to the lateral ventricle throughout its extent." [Wikipedia:Caudate_nucleus]
Xrefs:
links:

BM:Tel-CA
BTO:0000211
EFO:0000907
EMAPA:18207
EV:0100185
FMA:61833
GAID:670
[1]
[2]
MA:0000894
MAT:0000513
MESH:A.08.186.211.730.885.105.487.550.184
ncithesaurus:Caudate_Nucleus
NIF_GrossAnatomy:birnlex_1373
OpenCyc:Mx4rvvyAjJwpEbGdrcN5Y29ycA

SCTID:279297002
Synonyms: "caudatus" EXACT []
"nucleus caudatus" RELATED [BTO:0000211]
"nucleus caudatus" RELATED LATIN [Wikipedia:Caudate_nucleus]
Comments:CHECK - rodents. The caudate nucleus and putamen are separated by a clear white matter bundle in most species but not in rodents (MM)
Alt_id: UBERON:FMA_61833-MA_0000894
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0009663(telencephalic nucleus)
develops_from:UBERON:0010122(future caudate nucleus)
part_of:UBERON:0000369(corpus striatum),UBERON:0002435(striatum),UBERON:0005382(dorsal striatum),UBERON:0005383(caudate-putamen)



Children

is a:FF:10354-105E3 (caudate nucleus, newborn, donor10223)
derives from:FF:0010164 (human caudate nucleus - adult donor sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001873 (caudate nucleus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.61e-131FFCP PHASE1:Hg19::chr7:67237110..67237117,+#_e61d0aff9b289bd01b2859c4dfdddb83p@chr7:67237110..67237117, +
4.61e-131FFCP PHASE2:Hg19::chr7:67237110..67237117,+#_e61d0aff9b289bd01b2859c4dfdddb83p@chr7:67237110..67237117, +
4.61e-131FFCP PHASE2:Hg19::chr17:7271778..7271784,+#_e61d0aff9b289bd01b2859c4dfdddb83p@chr17:7271778..7271784, +
4.61e-131FFCP PHASE1:Hg19::chr17:77721568..77721571,+#_e61d0aff9b289bd01b2859c4dfdddb83p@chr17:77721568..77721571, +
4.61e-131FFCP PHASE1:Hg19::chr5:119669209..119669216,-#_e61d0aff9b289bd01b2859c4dfdddb83p5@ENST00000514240
4.61e-131FFCP PHASE2:Hg19::chr17:77721568..77721571,+#_e61d0aff9b289bd01b2859c4dfdddb83p@chr17:77721568..77721571, +
4.61e-131FFCP PHASE1:Hg19::chr17:7271778..7271784,+#_e61d0aff9b289bd01b2859c4dfdddb83p@chr17:7271778..7271784, +
4.61e-131FFCP PHASE2:Hg19::chr5:119669209..119669216,-#_e61d0aff9b289bd01b2859c4dfdddb83p5@ENST00000514240
4.61e-131FFCP PHASE2:Hg19::chr18:54898506..54898515,+#_e61d0aff9b289bd01b2859c4dfdddb83p@chr18:54898506..54898515, +
4.61e-131FFCP PHASE1:Hg19::chr18:54898506..54898515,+#_e61d0aff9b289bd01b2859c4dfdddb83p@chr18:54898506..54898515, +
8.99e-131FFCP PHASE2:Hg19::chr18:47967443..47967452,-#_4f3a80df92eb5ddf2b6b849d3b364484p@chr18:47967443..47967452, -
8.99e-131FFCP PHASE1:Hg19::chr18:47967443..47967452,-#_4f3a80df92eb5ddf2b6b849d3b364484p@chr18:47967443..47967452, -
1.75e-130FFCP PHASE1:Hg19::chr1:182640923..182640935,-#_80737030f333a4de05f0a3246b73b3f2p6@RGS8
1.75e-130FFCP PHASE2:Hg19::chr1:182640923..182640935,-#_80737030f333a4de05f0a3246b73b3f2p6@RGS8
5.68e-99FFCP PHASE1:Hg19::chr22:28195426..28195433,-#_a823f485b745cc83d51d2ed12bc8f922p@chr22:28195426..28195433, -
5.68e-99FFCP PHASE2:Hg19::chr22:28195426..28195433,-#_a823f485b745cc83d51d2ed12bc8f922p@chr22:28195426..28195433, -
5.68e-99FFCP PHASE1:Hg19::chr16:645297..645302,+#_a823f485b745cc83d51d2ed12bc8f922p@chr16:645297..645302, +
5.68e-99FFCP PHASE2:Hg19::chr13:112726433..112726446,+#_a823f485b745cc83d51d2ed12bc8f922p@chr13:112726433..112726446, +
5.68e-99FFCP PHASE2:Hg19::chr16:645297..645302,+#_a823f485b745cc83d51d2ed12bc8f922p@chr16:645297..645302, +
5.68e-99FFCP PHASE1:Hg19::chr13:112726433..112726446,+#_a823f485b745cc83d51d2ed12bc8f922p@chr13:112726433..112726446, +
5.68e-99FFCP PHASE2:Hg19::chrX:45984754..45984763,+#_a823f485b745cc83d51d2ed12bc8f922p@chrX:45984754..45984763, +
5.68e-99FFCP PHASE1:Hg19::chrX:45984754..45984763,+#_a823f485b745cc83d51d2ed12bc8f922p@chrX:45984754..45984763, +
9.38e-99FFCP PHASE2:Hg19::chr2:152828264..152828299,-#_cc2e41e77c3552c206815225498ffd48p@chr2:152828264..152828299, -
9.38e-99FFCP PHASE2:Hg19::chr12:6031299..6031315,-#_cc2e41e77c3552c206815225498ffd48p@chr12:6031299..6031315, -
9.38e-99FFCP PHASE2:Hg19::chr18:47967428..47967437,-#_cc2e41e77c3552c206815225498ffd48p@chr18:47967428..47967437, -
9.38e-99FFCP PHASE1:Hg19::chr18:47967428..47967437,-#_cc2e41e77c3552c206815225498ffd48p@chr18:47967428..47967437, -
9.38e-99FFCP PHASE1:Hg19::chr7:131761558..131761590,-#_cc2e41e77c3552c206815225498ffd48p@chr7:131761558..131761590, -
9.38e-99FFCP PHASE2:Hg19::chr7:131761558..131761590,-#_cc2e41e77c3552c206815225498ffd48p@chr7:131761558..131761590, -
9.38e-99FFCP PHASE1:Hg19::chr12:6031299..6031315,-#_cc2e41e77c3552c206815225498ffd48p@chr12:6031299..6031315, -
9.38e-99FFCP PHASE1:Hg19::chr2:152828264..152828299,-#_cc2e41e77c3552c206815225498ffd48p@chr2:152828264..152828299, -
1.55e-98FFCP PHASE2:Hg19::chr8:19799565..19799589,-#_02faf90d3e6fb2fa125a4223be876b44p@chr8:19799565..19799589, -
1.55e-98FFCP PHASE1:Hg19::chr1:234040273..234040278,+#_02faf90d3e6fb2fa125a4223be876b44p14@SLC35F3
1.55e-98FFCP PHASE1:Hg19::chr8:19799565..19799589,-#_02faf90d3e6fb2fa125a4223be876b44p@chr8:19799565..19799589, -
1.55e-98FFCP PHASE2:Hg19::chr10:560806..560813,-#_02faf90d3e6fb2fa125a4223be876b44p@chr10:560806..560813, -
1.55e-98FFCP PHASE1:Hg19::chr14:74892961..74892962,-#_02faf90d3e6fb2fa125a4223be876b44p9@SYNDIG1L
1.55e-98FFCP PHASE2:Hg19::chr1:31352969..31352970,-#_02faf90d3e6fb2fa125a4223be876b44p@chr1:31352969..31352970, -
1.55e-98FFCP PHASE1:Hg19::chr2:86769939..86769942,-#_02faf90d3e6fb2fa125a4223be876b44p17@RNF103-CHMP3, p19@CHMP3
1.55e-98FFCP PHASE2:Hg19::chr1:234040273..234040278,+#_02faf90d3e6fb2fa125a4223be876b44p14@SLC35F3
1.55e-98FFCP PHASE1:Hg19::chr1:234149057..234149066,+#_02faf90d3e6fb2fa125a4223be876b44p@chr1:234149057..234149066, +
1.55e-98FFCP PHASE1:Hg19::chr3:35730760..35730766,+#_02faf90d3e6fb2fa125a4223be876b44p78@ARPP21
1.55e-98FFCP PHASE2:Hg19::chr2:86769939..86769942,-#_02faf90d3e6fb2fa125a4223be876b44p17@RNF103-CHMP3, p19@CHMP3
1.55e-98FFCP PHASE1:Hg19::chr3:154148047..154148051,-#_02faf90d3e6fb2fa125a4223be876b44p@chr3:154148047..154148051, -
1.55e-98FFCP PHASE1:Hg19::chr2:10978182..10978189,-#_02faf90d3e6fb2fa125a4223be876b44p17@PDIA6
1.55e-98FFCP PHASE2:Hg19::chr6:36743426..36743433,-#_02faf90d3e6fb2fa125a4223be876b44p@chr6:36743426..36743433, -
1.55e-98FFCP PHASE1:Hg19::chr10:560764..560769,-#_02faf90d3e6fb2fa125a4223be876b44p@chr10:560764..560769, -
1.55e-98FFCP PHASE1:Hg19::chr6:36743426..36743433,-#_02faf90d3e6fb2fa125a4223be876b44p@chr6:36743426..36743433, -
1.55e-98FFCP PHASE1:Hg19::chr1:31352916..31352926,-#_02faf90d3e6fb2fa125a4223be876b44p@chr1:31352916..31352926, -
1.55e-98FFCP PHASE2:Hg19::chr7:24530137..24530142,+#_02faf90d3e6fb2fa125a4223be876b44p@chr7:24530137..24530142, +
1.55e-98FFCP PHASE2:Hg19::chr18:24521807..24521809,+#_02faf90d3e6fb2fa125a4223be876b44p@chr18:24521807..24521809, +
1.55e-98FFCP PHASE1:Hg19::chr7:24530137..24530142,+#_02faf90d3e6fb2fa125a4223be876b44p@chr7:24530137..24530142, +
1.55e-98FFCP PHASE2:Hg19::chr3:35730760..35730766,+#_02faf90d3e6fb2fa125a4223be876b44p78@ARPP21
1.55e-98FFCP PHASE2:Hg19::chr1:234149057..234149066,+#_02faf90d3e6fb2fa125a4223be876b44p@chr1:234149057..234149066, +
1.55e-98FFCP PHASE1:Hg19::chr18:24521807..24521809,+#_02faf90d3e6fb2fa125a4223be876b44p@chr18:24521807..24521809, +
1.55e-98FFCP PHASE1:Hg19::chr10:560806..560813,-#_02faf90d3e6fb2fa125a4223be876b44p@chr10:560806..560813, -
1.55e-98FFCP PHASE1:Hg19::chr1:31352969..31352970,-#_02faf90d3e6fb2fa125a4223be876b44p@chr1:31352969..31352970, -
1.55e-98FFCP PHASE2:Hg19::chr3:154148047..154148051,-#_02faf90d3e6fb2fa125a4223be876b44p@chr3:154148047..154148051, -
1.55e-98FFCP PHASE2:Hg19::chr10:560764..560769,-#_02faf90d3e6fb2fa125a4223be876b44p@chr10:560764..560769, -
1.55e-98FFCP PHASE2:Hg19::chr2:10978182..10978189,-#_02faf90d3e6fb2fa125a4223be876b44p17@PDIA6
1.55e-98FFCP PHASE2:Hg19::chr14:74892961..74892962,-#_02faf90d3e6fb2fa125a4223be876b44p9@SYNDIG1L
1.55e-98FFCP PHASE2:Hg19::chr1:31352916..31352926,-#_02faf90d3e6fb2fa125a4223be876b44p@chr1:31352916..31352926, -
2.56e-98FFCP PHASE1:Hg19::chr14:78638610..78638621,+#_7cdd5a205690c9b4af2916a99e96acf3p@chr14:78638610..78638621, +
2.56e-98FFCP PHASE2:Hg19::chr14:78638610..78638621,+#_7cdd5a205690c9b4af2916a99e96acf3p@chr14:78638610..78638621, +
1.05e-79FFCP PHASE2:Hg19::chr6:19877308..19877326,-#_2890ca93226d7691862801194b3a309dp@chr6:19877308..19877326, -
1.05e-79FFCP PHASE1:Hg19::chr6:19877308..19877326,-#_2890ca93226d7691862801194b3a309dp@chr6:19877308..19877326, -
1.56e-79FFCP PHASE2:Hg19::chr4:72101966..72101969,+#_c15768462842d6c7591ae8de8a91bdbcp21@SLC4A4
1.56e-79FFCP PHASE2:Hg19::chr15:35546024..35546035,-#_c15768462842d6c7591ae8de8a91bdbcp@chr15:35546024..35546035, -
1.56e-79FFCP PHASE2:Hg19::chr17:19390211..19390223,+#_c15768462842d6c7591ae8de8a91bdbcp@chr17:19390211..19390223, +
1.56e-79FFCP PHASE1:Hg19::chr15:35546024..35546035,-#_c15768462842d6c7591ae8de8a91bdbcp@chr15:35546024..35546035, -
1.56e-79FFCP PHASE1:Hg19::chr17:19390211..19390223,+#_c15768462842d6c7591ae8de8a91bdbcp@chr17:19390211..19390223, +
1.56e-79FFCP PHASE1:Hg19::chr4:72101966..72101969,+#_c15768462842d6c7591ae8de8a91bdbcp21@SLC4A4
2.34e-79FFCP PHASE2:Hg19::chr2:127783377..127783391,+#_b09938184e66f19964900633fa8c2523p2@BC051739
2.34e-79FFCP PHASE2:Hg19::chr12:117513131..117513155,-#_b09938184e66f19964900633fa8c2523p@chr12:117513131..117513155, -
2.34e-79FFCP PHASE1:Hg19::chr2:3853961..3853984,+#_b09938184e66f19964900633fa8c2523p@chr2:3853961..3853984, +
2.34e-79FFCP PHASE1:Hg19::chr20:9496091..9496106,+#_b09938184e66f19964900633fa8c2523p@chr20:9496091..9496106, +
2.34e-79FFCP PHASE1:Hg19::chr12:117513131..117513155,-#_b09938184e66f19964900633fa8c2523p@chr12:117513131..117513155, -
2.34e-79FFCP PHASE2:Hg19::chr2:3853961..3853984,+#_b09938184e66f19964900633fa8c2523p@chr2:3853961..3853984, +
2.34e-79FFCP PHASE2:Hg19::chr20:9496091..9496106,+#_b09938184e66f19964900633fa8c2523p@chr20:9496091..9496106, +
2.34e-79FFCP PHASE1:Hg19::chr2:127783377..127783391,+#_b09938184e66f19964900633fa8c2523p2@BC051739
3.49e-79FFCP PHASE2:Hg19::chr3:57807798..57807809,+#_739326bfa73f8a55bd3c1d845ca4f9a2p@chr3:57807798..57807809, +
3.49e-79FFCP PHASE1:Hg19::chr1:177134234..177134239,-#_739326bfa73f8a55bd3c1d845ca4f9a2p14@ASTN1
3.49e-79FFCP PHASE1:Hg19::chr10:97261874..97261887,-#_739326bfa73f8a55bd3c1d845ca4f9a2p@chr10:97261874..97261887, -
3.49e-79FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_739326bfa73f8a55bd3c1d845ca4f9a2p@chr8:57353666..57353675, -
3.49e-79FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_739326bfa73f8a55bd3c1d845ca4f9a2p@chr8:57353666..57353675, -
3.49e-79FFCP PHASE2:Hg19::chr10:97261874..97261887,-#_739326bfa73f8a55bd3c1d845ca4f9a2p@chr10:97261874..97261887, -
3.49e-79FFCP PHASE2:Hg19::chr1:177134234..177134239,-#_739326bfa73f8a55bd3c1d845ca4f9a2p14@ASTN1
3.49e-79FFCP PHASE1:Hg19::chr3:156008856..156008863,+#_739326bfa73f8a55bd3c1d845ca4f9a2p23@KCNAB1
3.49e-79FFCP PHASE1:Hg19::chr3:57807798..57807809,+#_739326bfa73f8a55bd3c1d845ca4f9a2p@chr3:57807798..57807809, +
3.49e-79FFCP PHASE2:Hg19::chr3:156008856..156008863,+#_739326bfa73f8a55bd3c1d845ca4f9a2p23@KCNAB1
5.22e-79FFCP PHASE2:Hg19::chr14:74893023..74893028,-#_fa3c1c9659e861d59858c45221486eaap6@SYNDIG1L
5.22e-79FFCP PHASE1:Hg19::chr14:74893023..74893028,-#_fa3c1c9659e861d59858c45221486eaap6@SYNDIG1L
1.16e-78FFCP PHASE1:Hg19::chr4:16728994..16729009,+#_0f0e284cfaeb6d45f4604fc11f3d688ap@chr4:16728994..16729009, +
1.16e-78FFCP PHASE2:Hg19::chr4:16728994..16729009,+#_0f0e284cfaeb6d45f4604fc11f3d688ap@chr4:16728994..16729009, +
7.41e-67FFCP PHASE2:Hg19::chr14:101123580..101123593,+#_e30f76b3f8c67a3ab5725ecdac8f4f8bp1@LINC00523
7.41e-67FFCP PHASE1:Hg19::chr7:111424575..111424587,-#_e30f76b3f8c67a3ab5725ecdac8f4f8bp9@DOCK4
7.41e-67FFCP PHASE1:Hg19::chr14:101123580..101123593,+#_e30f76b3f8c67a3ab5725ecdac8f4f8bp1@LINC00523
7.41e-67FFCP PHASE2:Hg19::chr3:85007662..85007678,+#_e30f76b3f8c67a3ab5725ecdac8f4f8bp8@CADM2
7.41e-67FFCP PHASE2:Hg19::chr4:135557487..135557500,-#_e30f76b3f8c67a3ab5725ecdac8f4f8bp@chr4:135557487..135557500, -
7.41e-67FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_e30f76b3f8c67a3ab5725ecdac8f4f8bp@chr8:57353676..57353688, -
7.41e-67FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_e30f76b3f8c67a3ab5725ecdac8f4f8bp@chr8:57353676..57353688, -
7.41e-67FFCP PHASE1:Hg19::chr3:85007662..85007678,+#_e30f76b3f8c67a3ab5725ecdac8f4f8bp8@CADM2

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