UBERON:0001153: Difference between revisions
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|located_in= | |located_in= | ||
|name=caecum | |name=caecum | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000059;;UBERON:0001155 | |part_of=UBERON:0000059;;UBERON:0001155 | ||
Latest revision as of 17:16, 12 September 2014
| Name: | caecum | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Pouch, connecting the ileum with the ascending colon of the large intestine. It is separated from the ileum by the ileocecal valve, and is the beginning of the large intestine. It is also separated from the colon by the cecocolic junction." [Wikipedia:Cecum] | ||
| Xrefs: |
| ||
| Synonyms: |
"blind intestine" RELATED [BTO:0000166] "blindgut" RELATED [BTO:0000166] "cecum" EXACT [FMA:14541] "intestinum caecum" RELATED [BTO:0000166] "intestinum crassum caecum" EXACT [] "intestinum crassum cecum" RELATED [BTO:0000166] | ||
| Comments: | A cecum is present in most amniote species, and also in lungfish, but not in any living species of amphibian. In reptiles, it is usually a single median structure, arising from the dorsal side of the large intestine. Birds typically have two paired ceca, as, unlike other mammals, do hyraxes. Most mammalian herbivores have a relatively large cecum, hosting a large number of bacteria, which aid in the enzymatic breakdown of plant materials such as cellulose; in many species, it is considerably wider than the colon. In contrast, obligatory carnivores, whose diets contain little or no plant material, have a reduced cecum, which is often partially or wholly replaced by the vermiform appendix. Many fish have a number of small outpocketings, called pyloric ceca, along their intestine; despite the name they are not homologous with the cecum of amniotes, and their purpose is to increase the overall area of the digestive epithelium.[2] Some invertebrates, such as squid,[3] may also have structures with the same name, but these have no relationship with those of vertebrates.[WP] | ||
| Alt_id: | UBERON:FMA_14541-MA_0000334-MIAA_0000288 | ||
| Subset: | uberon_slim |
200px-Stomach_colon_rectum_diagram.svg.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0009854(digestive tract diverticulum) |
|---|---|
| develops_from: | UBERON:0001045(midgut) |
| part_of: | UBERON:0000059(large intestine),UBERON:0001155(colon) |
Children
| derives from: | FF:0011324 (mouse cecum - adult sample) |
|---|---|
| part of: | UBERON:0001154 (vermiform appendix) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10189-103D9 (appendix, adult)
- 37-13H4 (cecum, adult)
Mouse (Mus musculus)
- 10189-103D9 (appendix, adult)
- 37-13H4 (cecum, adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001153 (caecum), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 9.37e-99 | FFCP PHASE1:Hg19::chr20:36694529..36694537,+#_fb436280eb7e6b5290795eaf6cc8e6d7 | p30@RPRD1B |
| 9.37e-99 | FFCP PHASE2:Hg19::chr16:23489788..23489792,-#_fb436280eb7e6b5290795eaf6cc8e6d7 | p@chr16:23489788..23489792, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr20:36694529..36694537,+#_fb436280eb7e6b5290795eaf6cc8e6d7 | p30@RPRD1B |
| 9.37e-99 | FFCP PHASE1:Hg19::chr3:164875937..164875960,-#_fb436280eb7e6b5290795eaf6cc8e6d7 | p1@ENST00000472120 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr16:23489788..23489792,-#_fb436280eb7e6b5290795eaf6cc8e6d7 | p@chr16:23489788..23489792, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr3:164875937..164875960,-#_fb436280eb7e6b5290795eaf6cc8e6d7 | p1@ENST00000472120 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr1:204247050..204247059,-#_186502d25cb5f1b1cd2ed3f6e81f619c | p@chr1:204247050..204247059, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:6919697..6919713,-#_186502d25cb5f1b1cd2ed3f6e81f619c | p@chr2:6919697..6919713, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr7:25361115..25361117,+#_186502d25cb5f1b1cd2ed3f6e81f619c | p@chr7:25361115..25361117, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr5:78065820..78065833,-#_186502d25cb5f1b1cd2ed3f6e81f619c | p27@LHFPL2 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr19:42190911..42190925,-#_186502d25cb5f1b1cd2ed3f6e81f619c | p@chr19:42190911..42190925, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr9:37384457..37384469,-#_186502d25cb5f1b1cd2ed3f6e81f619c | p1@ENST00000452923 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr1:204247050..204247059,-#_186502d25cb5f1b1cd2ed3f6e81f619c | p@chr1:204247050..204247059, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr14:106090812..106090849,-#_186502d25cb5f1b1cd2ed3f6e81f619c | p@chr14:106090812..106090849, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr8:23282797..23282803,-#_186502d25cb5f1b1cd2ed3f6e81f619c | p37@LOXL2 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr14:106091272..106091292,-#_186502d25cb5f1b1cd2ed3f6e81f619c | p@chr14:106091272..106091292, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr19:42190911..42190925,-#_186502d25cb5f1b1cd2ed3f6e81f619c | p@chr19:42190911..42190925, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr9:37384457..37384469,-#_186502d25cb5f1b1cd2ed3f6e81f619c | p1@ENST00000452923 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr14:106090812..106090849,-#_186502d25cb5f1b1cd2ed3f6e81f619c | p@chr14:106090812..106090849, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:6919697..6919713,-#_186502d25cb5f1b1cd2ed3f6e81f619c | p@chr2:6919697..6919713, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr8:23282797..23282803,-#_186502d25cb5f1b1cd2ed3f6e81f619c | p37@LOXL2 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr7:25361115..25361117,+#_186502d25cb5f1b1cd2ed3f6e81f619c | p@chr7:25361115..25361117, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr14:106091272..106091292,-#_186502d25cb5f1b1cd2ed3f6e81f619c | p@chr14:106091272..106091292, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr5:78065820..78065833,-#_186502d25cb5f1b1cd2ed3f6e81f619c | p27@LHFPL2 |
| 3.07e-86 | FFCP PHASE2:Mm9::chr14:93595014..93595015,-#_3db07350bb75d52adeb0c56a6fad72f1 | p@chr14:93595014..93595015, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr4:82849680..82849681,-#_3db07350bb75d52adeb0c56a6fad72f1 | p@chr4:82849680..82849681, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr18:44716456..44716461,+#_3db07350bb75d52adeb0c56a6fad72f1 | p@chr18:44716456..44716461, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr4:82849680..82849681,-#_3db07350bb75d52adeb0c56a6fad72f1 | p@chr4:82849680..82849681, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr18:44716456..44716461,+#_3db07350bb75d52adeb0c56a6fad72f1 | p@chr18:44716456..44716461, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr14:93595014..93595015,-#_3db07350bb75d52adeb0c56a6fad72f1 | p@chr14:93595014..93595015, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr3:187957664..187957675,+#_e0e20d62ab50d9c3a81ec6179be2e631 | p58@LPP |
| 1.23e-66 | FFCP PHASE1:Hg19::chr3:187957646..187957656,+#_e0e20d62ab50d9c3a81ec6179be2e631 | p43@LPP |
| 1.23e-66 | FFCP PHASE1:Hg19::chr3:187957664..187957675,+#_e0e20d62ab50d9c3a81ec6179be2e631 | p58@LPP |
| 1.23e-66 | FFCP PHASE2:Hg19::chr3:187957646..187957656,+#_e0e20d62ab50d9c3a81ec6179be2e631 | p43@LPP |
| 2.39e-66 | FFCP PHASE1:Hg19::chr1:157567826..157567835,-#_44f0c4a100f6abe23da3b450441052ea | p2@FCRL4 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr16:69418649..69418659,-#_44f0c4a100f6abe23da3b450441052ea | p@chr16:69418649..69418659, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr16:69418649..69418659,-#_44f0c4a100f6abe23da3b450441052ea | p@chr16:69418649..69418659, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr1:157567826..157567835,-#_44f0c4a100f6abe23da3b450441052ea | p2@FCRL4 |
| 4.66e-66 | FFCP PHASE1:Hg19::chr2:109392190..109392199,+#_b2e34ef963fe50e9615141fe0877d1e9 | p14@RANBP2 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr7:145507480..145507504,-#_b2e34ef963fe50e9615141fe0877d1e9 | p@chr7:145507480..145507504, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr4:154343190..154343236,+#_b2e34ef963fe50e9615141fe0877d1e9 | p@chr4:154343190..154343236, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr4:146980425..146980439,-#_b2e34ef963fe50e9615141fe0877d1e9 | p@chr4:146980425..146980439, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr10:52121805..52121816,-#_b2e34ef963fe50e9615141fe0877d1e9 | p@chr10:52121805..52121816, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr15:45950466..45950474,+#_b2e34ef963fe50e9615141fe0877d1e9 | p@chr15:45950466..45950474, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr2:109392190..109392199,+#_b2e34ef963fe50e9615141fe0877d1e9 | p14@RANBP2 |
| 4.66e-66 | FFCP PHASE1:Hg19::chr1:38201159..38201166,-#_b2e34ef963fe50e9615141fe0877d1e9 | p@chr1:38201159..38201166, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr14:75906948..75906962,+#_b2e34ef963fe50e9615141fe0877d1e9 | p@chr14:75906948..75906962, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr15:45950466..45950474,+#_b2e34ef963fe50e9615141fe0877d1e9 | p@chr15:45950466..45950474, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr10:52121805..52121816,-#_b2e34ef963fe50e9615141fe0877d1e9 | p@chr10:52121805..52121816, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr4:146980404..146980417,-#_b2e34ef963fe50e9615141fe0877d1e9 | p@chr4:146980404..146980417, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr1:38201159..38201166,-#_b2e34ef963fe50e9615141fe0877d1e9 | p@chr1:38201159..38201166, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr2:231068302..231068309,+#_b2e34ef963fe50e9615141fe0877d1e9 | p2@ENST00000441657 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr14:75906948..75906962,+#_b2e34ef963fe50e9615141fe0877d1e9 | p@chr14:75906948..75906962, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr7:145507480..145507504,-#_b2e34ef963fe50e9615141fe0877d1e9 | p@chr7:145507480..145507504, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr4:154343190..154343236,+#_b2e34ef963fe50e9615141fe0877d1e9 | p@chr4:154343190..154343236, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr4:146980425..146980439,-#_b2e34ef963fe50e9615141fe0877d1e9 | p@chr4:146980425..146980439, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr4:146980404..146980417,-#_b2e34ef963fe50e9615141fe0877d1e9 | p@chr4:146980404..146980417, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr2:231068302..231068309,+#_b2e34ef963fe50e9615141fe0877d1e9 | p2@ENST00000441657 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr15:36739580..36739587,-#_76daa24d103ec5351d1673dc3b58e5e2 | p@chr15:36739580..36739587, - |
| 1.46e-50 | FFCP PHASE2:Hg19::chr15:36739580..36739587,-#_76daa24d103ec5351d1673dc3b58e5e2 | p@chr15:36739580..36739587, - |
| 1.46e-50 | FFCP PHASE1:Hg19::chr16:33629600..33629613,+#_76daa24d103ec5351d1673dc3b58e5e2 | p1@AF343368 |
| 1.46e-50 | FFCP PHASE2:Hg19::chr16:33629600..33629613,+#_76daa24d103ec5351d1673dc3b58e5e2 | p1@AF343368 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr4:150822397..150822409,-#_62938c7ca91ab0436be409ef07045a6b | p@chr4:150822397..150822409, - |
| 2.42e-50 | FFCP PHASE1:Hg19::chr12:31135774..31135816,+#_62938c7ca91ab0436be409ef07045a6b | p@chr12:31135774..31135816, + |
| 2.42e-50 | FFCP PHASE2:Hg19::chr14:106091539..106091550,-#_62938c7ca91ab0436be409ef07045a6b | p@chr14:106091539..106091550, - |
| 2.42e-50 | FFCP PHASE1:Hg19::chr15:75639773..75639782,+#_62938c7ca91ab0436be409ef07045a6b | p15@NEIL1 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr9:79267432..79267452,-#_62938c7ca91ab0436be409ef07045a6b | p@chr9:79267432..79267452, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr4:150822397..150822409,-#_62938c7ca91ab0436be409ef07045a6b | p@chr4:150822397..150822409, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr15:75639773..75639782,+#_62938c7ca91ab0436be409ef07045a6b | p15@NEIL1 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr20:36694117..36694150,+#_62938c7ca91ab0436be409ef07045a6b | p24@RPRD1B |
| 2.42e-50 | FFCP PHASE1:Hg19::chr14:106091539..106091550,-#_62938c7ca91ab0436be409ef07045a6b | p@chr14:106091539..106091550, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr12:31135774..31135816,+#_62938c7ca91ab0436be409ef07045a6b | p@chr12:31135774..31135816, + |
| 2.42e-50 | FFCP PHASE2:Hg19::chr20:36694117..36694150,+#_62938c7ca91ab0436be409ef07045a6b | p24@RPRD1B |
| 2.42e-50 | FFCP PHASE1:Hg19::chr9:79267432..79267452,-#_62938c7ca91ab0436be409ef07045a6b | p@chr9:79267432..79267452, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr8:119294370..119294381,+#_825463f3707d0849b4e096ff19cd7a2e | p4@ENST00000366457 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr7:40852366..40852377,+#_825463f3707d0849b4e096ff19cd7a2e | p@chr7:40852366..40852377, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr4:20985642..20985664,-#_825463f3707d0849b4e096ff19cd7a2e | p16@KCNIP4 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr7:40852366..40852377,+#_825463f3707d0849b4e096ff19cd7a2e | p@chr7:40852366..40852377, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr11:60260248..60260251,+#_825463f3707d0849b4e096ff19cd7a2e | p1@MS4A12 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr8:119294370..119294381,+#_825463f3707d0849b4e096ff19cd7a2e | p4@ENST00000366457 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr11:60260248..60260251,+#_825463f3707d0849b4e096ff19cd7a2e | p1@MS4A12 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr4:20985642..20985664,-#_825463f3707d0849b4e096ff19cd7a2e | p16@KCNIP4 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr3:187694215..187694226,-#_da0cdb7fe7e49d71345fa465589c33e1 | p2@ENST00000446091, p2@uc003frr.1 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr7:40850556..40850576,+#_da0cdb7fe7e49d71345fa465589c33e1 | p@chr7:40850556..40850576, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chr3:62809350..62809370,+#_da0cdb7fe7e49d71345fa465589c33e1 | p@chr3:62809350..62809370, + |
| 6.58e-50 | FFCP PHASE1:Hg19::chr14:106746150..106746153,-#_da0cdb7fe7e49d71345fa465589c33e1 | p1@IGHV3-25 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr3:187694215..187694226,-#_da0cdb7fe7e49d71345fa465589c33e1 | p2@ENST00000446091, p2@uc003frr.1 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr5:78505723..78505730,+#_da0cdb7fe7e49d71345fa465589c33e1 | p@chr5:78505723..78505730, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chr14:106746150..106746153,-#_da0cdb7fe7e49d71345fa465589c33e1 | p1@IGHV3-25 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr5:78505723..78505730,+#_da0cdb7fe7e49d71345fa465589c33e1 | p@chr5:78505723..78505730, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chr12:125634292..125634301,-#_da0cdb7fe7e49d71345fa465589c33e1 | p@chr12:125634292..125634301, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr7:40850556..40850576,+#_da0cdb7fe7e49d71345fa465589c33e1 | p@chr7:40850556..40850576, + |
| 6.58e-50 | FFCP PHASE1:Hg19::chr12:125634292..125634301,-#_da0cdb7fe7e49d71345fa465589c33e1 | p@chr12:125634292..125634301, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr3:62809350..62809370,+#_da0cdb7fe7e49d71345fa465589c33e1 | p@chr3:62809350..62809370, + |
| 2.74e-44 | FFCP PHASE1:Mm9::chr3:87454882..87454885,+#_beeeb7e825ae800593e05a89d7a0c373 | p@chr3:87454882..87454885, + |
| 2.74e-44 | FFCP PHASE2:Mm9::chr11:22635514..22635519,+#_beeeb7e825ae800593e05a89d7a0c373 | p@chr11:22635514..22635519, + |
| 2.74e-44 | FFCP PHASE2:Mm9::chr6:135296515..135296529,-#_beeeb7e825ae800593e05a89d7a0c373 | p@chr6:135296515..135296529, - |
| 2.74e-44 | FFCP PHASE2:Mm9::chr8:116378848..116378855,-#_beeeb7e825ae800593e05a89d7a0c373 | p@chr8:116378848..116378855, - |
| 2.74e-44 | FFCP PHASE1:Mm9::chr11:96787494..96787502,+#_beeeb7e825ae800593e05a89d7a0c373 | p@chr11:96787494..96787502, + |
| 2.74e-44 | FFCP PHASE1:Mm9::chr1:56076718..56076723,+#_beeeb7e825ae800593e05a89d7a0c373 | p@chr1:56076718..56076723, + |
