UBERON:0001008: Difference between revisions
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|is_obsolete= | |is_obsolete= | ||
|located_in= | |located_in= | ||
|name= | |name=renal system | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 17:14, 12 September 2014
| Name: | renal system | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "The excretory system is the system of an organism that mainly performs the function of excretion, the bodily process of discharging wastes. It is responsible for the elimination of wastes produced by the processes that maintain homeostasis." [BILA:0000015, Wikipedia:Excretory_system] | ||
| Xrefs: |
| ||
| Synonyms: |
"renal or urinary system" RELATED [EHDAA:5901] "renal system" EXACT [GO:0001977] "renal/urinary system" RELATED [] "systema urinaria" EXACT [FMA:7159] "systema urinarium" EXACT [BTO:0003092] "urinary system" EXACT [] "urinary tract" EXACT [] | ||
| Comments: | In various sources such as Encyclopedia Britannica, the excretory and urinary systems are indeed the same system (see wikipedia talk page); we merge two BTO classes here | ||
| Alt_id: | UBERON:FBbt_00005056-FMA_7159-MIAA_0000027-WBbt_0005736-XAO_0000143-ZFA_0000163 | ||
| Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000467(anatomical system) |
|---|---|
| disjoint_from: | UBERON:0001009(circulatory system),UBERON:0001016(nervous system),UBERON:0001033(gustatory system),UBERON:0001434(skeletal system),UBERON:0002204(musculoskeletal system),UBERON:0002294(biliary system),UBERON:0002330(exocrine system),UBERON:0002390(hematopoietic system),UBERON:0002405(immune system),UBERON:0002416(integumental system),UBERON:0002423(hepatobiliary system),UBERON:0004456(entire sense organ system) |
Children
| disjoint from: | UBERON:0000949 (endocrine system),UBERON:0000990 (reproductive system),UBERON:0001004 (respiratory system),UBERON:0001007 (digestive system) |
|---|---|
| part of: | UBERON:0000163 (embryonic cloaca),UBERON:0000164 (primitive urogenital sinus),UBERON:0000365 (urothelium),UBERON:0001556 (lower urinary tract),UBERON:0004340 (allantois),UBERON:0006554 (urinary system structure),UBERON:0006555 (excretory tube),UBERON:0009773 (renal tubule),UBERON:0011143 (upper urinary tract) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10011-101C2 (bladder, adult, pool1)
- 10017-101C8 (kidney, adult, pool1)
- 10045-101F9 (kidney, fetal, pool1)
- 10088-102B7
- 10290-104G2
- 10291-104G3
- 10318-105A3
- 10319-105A4 (Urethra, donor2)
- 10346-105D4
- 10347-105D5
... further results Mouse (Mus musculus)
- 10011-101C2 (bladder, adult, pool1)
- 10017-101C8 (kidney, adult, pool1)
- 10045-101F9 (kidney, fetal, pool1)
- 10088-102B7
- 10290-104G2
- 10291-104G3
- 10318-105A3
- 10319-105A4 (Urethra, donor2)
- 10346-105D4
- 10347-105D5
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001008 (renal system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.12e-59 | FFCP PHASE2:Mm9::chr2:74542680..74542705,+#_a20ef42cae17083d0b6875e50dcf99f2 | p6@Hoxd8 |
| 5.12e-59 | FFCP PHASE1:Mm9::chr2:74542680..74542705,+#_a20ef42cae17083d0b6875e50dcf99f2 | p6@Hoxd8 |
| 1.68e-54 | FFCP PHASE2:Mm9::chr2:74542589..74542602,+#_f9b9e098738b0a4e0f6ff7b3804ec236 | p8@Hoxd8 |
| 1.68e-54 | FFCP PHASE1:Mm9::chr2:74542589..74542602,+#_f9b9e098738b0a4e0f6ff7b3804ec236 | p8@Hoxd8 |
| 5.23e-50 | FFCP PHASE2:Mm9::chr19:44824107..44824111,-#_c4757b8f73a2b561cdd86dcecb2f1bea | p@chr19:44824107..44824111, - |
| 5.23e-50 | FFCP PHASE1:Mm9::chr19:44824107..44824111,-#_c4757b8f73a2b561cdd86dcecb2f1bea | p@chr19:44824107..44824111, - |
| 3.33e-48 | FFCP PHASE2:Mm9::chr16:88563303..88563315,-#_87a1bcb34538e1ad7314044b82d4e1b6 | p5@Cldn8 |
| 3.33e-48 | FFCP PHASE1:Mm9::chr16:88563303..88563315,-#_87a1bcb34538e1ad7314044b82d4e1b6 | p5@Cldn8 |
| 3.76e-46 | FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_0b4b35990f0dc2601003294a26f59fd2 | p4@PAX2 |
| 3.76e-46 | FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_0b4b35990f0dc2601003294a26f59fd2 | p4@PAX2 |
| 5.92e-46 | FFCP PHASE1:Mm9::chr10:3291561..3291580,+#_f4c4ea2a5dbaa38e8b8ff17f8fb868b4 | p@chr10:3291561..3291580, + |
| 5.92e-46 | FFCP PHASE2:Mm9::chr10:3291561..3291580,+#_f4c4ea2a5dbaa38e8b8ff17f8fb868b4 | p@chr10:3291561..3291580, + |
| 1.55e-45 | FFCP PHASE1:Mm9::chr19:44899724..44899728,+#_29d5c98e3dd3ad26e62625c8c4836c5f | p@chr19:44899724..44899728, + |
| 1.55e-45 | FFCP PHASE2:Mm9::chr19:44821149..44821161,+#_29d5c98e3dd3ad26e62625c8c4836c5f | p@chr19:44821149..44821161, + |
| 1.55e-45 | FFCP PHASE2:Mm9::chr19:44899724..44899728,+#_29d5c98e3dd3ad26e62625c8c4836c5f | p@chr19:44899724..44899728, + |
| 1.55e-45 | FFCP PHASE1:Mm9::chr19:44821149..44821161,+#_29d5c98e3dd3ad26e62625c8c4836c5f | p@chr19:44821149..44821161, + |
| 1.11e-43 | FFCP PHASE1:Mm9::chr8:107148422..107148433,+#_95e3952f146b43dc095ea4f6920c7190 | p@chr8:107148422..107148433, + |
| 1.11e-43 | FFCP PHASE2:Mm9::chr8:107148422..107148433,+#_95e3952f146b43dc095ea4f6920c7190 | p@chr8:107148422..107148433, + |
| 5.28e-43 | FFCP PHASE1:Mm9::chr16:88563264..88563271,-#_5c02bb6a160d1f2eda18b0d4a1ecf872 | p@chr16:88563264..88563271, - |
| 5.28e-43 | FFCP PHASE2:Mm9::chr16:88563264..88563271,-#_5c02bb6a160d1f2eda18b0d4a1ecf872 | p@chr16:88563264..88563271, - |
| 1.67e-42 | FFCP PHASE1:Mm9::chr4:107817557..107817589,-#_073e811affac53c60c2e1cf0c7ac6038 | p5@Scp2 |
| 1.67e-42 | FFCP PHASE2:Mm9::chr4:107817557..107817589,-#_073e811affac53c60c2e1cf0c7ac6038 | p5@Scp2 |
| 1.75e-42 | FFCP PHASE1:Mm9::chr10:50689167..50689171,+#_2c5ec7d6bb2232619b8ff69d531e67ca | p@chr10:50689167..50689171, + |
| 1.75e-42 | FFCP PHASE2:Mm9::chr10:50689167..50689171,+#_2c5ec7d6bb2232619b8ff69d531e67ca | p@chr10:50689167..50689171, + |
| 1.92e-42 | FFCP PHASE2:Mm9::chr19:44821081..44821112,+#_d6f77d8a695ac61a8c890a702f9e9bba | p@chr19:44821081..44821112, + |
| 1.92e-42 | FFCP PHASE1:Mm9::chr19:44821081..44821112,+#_d6f77d8a695ac61a8c890a702f9e9bba | p@chr19:44821081..44821112, + |
| 2.1e-42 | FFCP PHASE1:Mm9::chr5:24755801..24755819,+#_2228f77f1c1c2d36e8e7cd814ea748a6 | p@chr5:24755801..24755819, + |
| 2.1e-42 | FFCP PHASE2:Mm9::chr5:24755801..24755819,+#_2228f77f1c1c2d36e8e7cd814ea748a6 | p@chr5:24755801..24755819, + |
| 2.53e-42 | FFCP PHASE1:Mm9::chr19:59532611..59532623,+#_ec5ec8661a4e0ca738972401ff1c107d | p@chr19:59532611..59532623, + |
| 2.53e-42 | FFCP PHASE2:Mm9::chr19:59532611..59532623,+#_ec5ec8661a4e0ca738972401ff1c107d | p@chr19:59532611..59532623, + |
| 1.89e-41 | FFCP PHASE2:Mm9::chr4:44956599..44956663,+#_78a9e20db04d278452febdeb0218b951 | p1@ENSMUST00000154177 |
| 1.89e-41 | FFCP PHASE1:Mm9::chr4:44956599..44956663,+#_78a9e20db04d278452febdeb0218b951 | p1@ENSMUST00000154177 |
| 2.09e-41 | FFCP PHASE1:Mm9::chr12:80169429..80169447,-#_9ed02a364468ab131f31830c3e3f6a3b | p@chr12:80169429..80169447, - |
| 2.09e-41 | FFCP PHASE2:Mm9::chr12:80169429..80169447,-#_9ed02a364468ab131f31830c3e3f6a3b | p@chr12:80169429..80169447, - |
| 4.4e-41 | FFCP PHASE2:Mm9::chr19:17554168..17554181,+#_03ede2828cc2a987f96017aec8421ffe | p@chr19:17554168..17554181, + |
| 4.4e-41 | FFCP PHASE1:Mm9::chr10:79277411..79277429,+#_03ede2828cc2a987f96017aec8421ffe | p@chr10:79277411..79277429, + |
| 4.4e-41 | FFCP PHASE1:Mm9::chr2:74971765..74971779,-#_03ede2828cc2a987f96017aec8421ffe | p@chr2:74971765..74971779, - |
| 4.4e-41 | FFCP PHASE2:Mm9::chr10:51915118..51915138,-#_03ede2828cc2a987f96017aec8421ffe | p4@Ros1 |
| 4.4e-41 | FFCP PHASE2:Mm9::chr7:47891824..47891827,-#_03ede2828cc2a987f96017aec8421ffe | p@chr7:47891824..47891827, - |
| 4.4e-41 | FFCP PHASE1:Mm9::chr1:89952042..89952053,+#_03ede2828cc2a987f96017aec8421ffe | p2@LOC100048662, p2@LOC100048744, p2@Ugt1a10 |
| 4.4e-41 | FFCP PHASE1:Mm9::chr7:31244771..31244782,+#_03ede2828cc2a987f96017aec8421ffe | p2@Nphs1 |
| 4.4e-41 | FFCP PHASE2:Mm9::chr10:79277411..79277429,+#_03ede2828cc2a987f96017aec8421ffe | p@chr10:79277411..79277429, + |
| 4.4e-41 | FFCP PHASE1:Mm9::chr5:5694436..5694447,-#_03ede2828cc2a987f96017aec8421ffe | p7@Steap2 |
| 4.4e-41 | FFCP PHASE1:Mm9::chr7:126785928..126785945,-#_03ede2828cc2a987f96017aec8421ffe | p3@uc009jll.1 |
| 4.4e-41 | FFCP PHASE2:Mm9::chr7:126785928..126785945,-#_03ede2828cc2a987f96017aec8421ffe | p3@uc009jll.1 |
| 4.4e-41 | FFCP PHASE1:Mm9::chr7:47891824..47891827,-#_03ede2828cc2a987f96017aec8421ffe | p@chr7:47891824..47891827, - |
| 4.4e-41 | FFCP PHASE1:Mm9::chr10:39251651..39251690,+#_03ede2828cc2a987f96017aec8421ffe | p@chr10:39251651..39251690, + |
| 4.4e-41 | FFCP PHASE1:Mm9::chr10:51915118..51915138,-#_03ede2828cc2a987f96017aec8421ffe | p4@Ros1 |
| 4.4e-41 | FFCP PHASE1:Mm9::chr19:44821208..44821217,+#_03ede2828cc2a987f96017aec8421ffe | p@chr19:44821208..44821217, + |
| 4.4e-41 | FFCP PHASE2:Mm9::chr1:89952042..89952053,+#_03ede2828cc2a987f96017aec8421ffe | p2@LOC100048662, p2@LOC100048744, p2@Ugt1a10 |
| 4.4e-41 | FFCP PHASE2:Mm9::chr10:50622895..50622905,+#_03ede2828cc2a987f96017aec8421ffe | p@chr10:50622895..50622905, + |
| 4.4e-41 | FFCP PHASE2:Mm9::chr8:118959620..118959632,-#_03ede2828cc2a987f96017aec8421ffe | p@chr8:118959620..118959632, - |
| 4.4e-41 | FFCP PHASE2:Mm9::chr2:74971765..74971779,-#_03ede2828cc2a987f96017aec8421ffe | p@chr2:74971765..74971779, - |
| 4.4e-41 | FFCP PHASE2:Mm9::chr7:31244771..31244782,+#_03ede2828cc2a987f96017aec8421ffe | p2@Nphs1 |
| 4.4e-41 | FFCP PHASE1:Mm9::chr19:17554168..17554181,+#_03ede2828cc2a987f96017aec8421ffe | p@chr19:17554168..17554181, + |
| 4.4e-41 | FFCP PHASE2:Mm9::chr5:5694436..5694447,-#_03ede2828cc2a987f96017aec8421ffe | p7@Steap2 |
| 4.4e-41 | FFCP PHASE1:Mm9::chr10:50622895..50622905,+#_03ede2828cc2a987f96017aec8421ffe | p@chr10:50622895..50622905, + |
| 4.4e-41 | FFCP PHASE2:Mm9::chr19:44821208..44821217,+#_03ede2828cc2a987f96017aec8421ffe | p@chr19:44821208..44821217, + |
| 4.4e-41 | FFCP PHASE2:Mm9::chr10:39251651..39251690,+#_03ede2828cc2a987f96017aec8421ffe | p@chr10:39251651..39251690, + |
| 4.4e-41 | FFCP PHASE1:Mm9::chr8:118959620..118959632,-#_03ede2828cc2a987f96017aec8421ffe | p@chr8:118959620..118959632, - |
| 2.95e-40 | FFCP PHASE1:Mm9::chr2:9809451..9809469,-#_515aee19cc7c71f2f7c2f6d563f4bc13 | p6@Gata3 |
| 2.95e-40 | FFCP PHASE2:Mm9::chr2:9809451..9809469,-#_515aee19cc7c71f2f7c2f6d563f4bc13 | p6@Gata3 |
| 7.78e-40 | FFCP PHASE2:Mm9::chr18:84819316..84819345,-#_b7d74d5275c2a69170eb4759c8bb1df7 | p1@Cndp1 |
| 7.78e-40 | FFCP PHASE1:Mm9::chr18:84819316..84819345,-#_b7d74d5275c2a69170eb4759c8bb1df7 | p1@Cndp1 |
| 2.26e-39 | FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_1995ea7c78915f38ec4bf929a9deaa0d | p7@HOXA10 |
| 2.26e-39 | FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_1995ea7c78915f38ec4bf929a9deaa0d | p7@HOXA10 |
| 2.66e-38 | FFCP PHASE1:Mm9::chr16:88563375..88563386,-#_2236afdf5ceb828d5e6ad33fb3ec921f | p4@Cldn8 |
| 2.66e-38 | FFCP PHASE2:Mm9::chr16:88563375..88563386,-#_2236afdf5ceb828d5e6ad33fb3ec921f | p4@Cldn8 |
| 2.89e-38 | FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_272db9192addd94f4dbec788d4d86463 | p3@PAX2 |
| 2.89e-38 | FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_272db9192addd94f4dbec788d4d86463 | p3@PAX2 |
| 4.03e-38 | FFCP PHASE2:Mm9::chr11:75720190..75720216,-#_b495886862a327e27f2f73c10ac457c6 | p@chr11:75720190..75720216, - |
| 4.03e-38 | FFCP PHASE1:Mm9::chr11:75720190..75720216,-#_b495886862a327e27f2f73c10ac457c6 | p@chr11:75720190..75720216, - |
| 4.41e-38 | FFCP PHASE2:Mm9::chr13:108834249..108834299,+#_736e9ad9e9475eb17e9e85236311316f | p3@2810008M24Rik |
| 4.41e-38 | FFCP PHASE1:Mm9::chr13:108834249..108834299,+#_736e9ad9e9475eb17e9e85236311316f | p3@2810008M24Rik |
| 5.28e-38 | FFCP PHASE1:Mm9::chr14:30665533..30665556,-#_069d5d360f0de05b77ba858c745f15b7 | p@chr14:30665533..30665556, - |
| 5.28e-38 | FFCP PHASE2:Mm9::chr14:30665533..30665556,-#_069d5d360f0de05b77ba858c745f15b7 | p@chr14:30665533..30665556, - |
| 8.29e-38 | FFCP PHASE2:Mm9::chr2:74975548..74975563,-#_1087c22fffa1324164bf0069f89a0435 | p1@ENSMUST00000143898 |
| 8.29e-38 | FFCP PHASE1:Mm9::chr2:74975548..74975563,-#_1087c22fffa1324164bf0069f89a0435 | p1@ENSMUST00000143898 |
| 1.77e-37 | FFCP PHASE2:Mm9::chr2:24331116..24331125,-#_d6f34a161cd4c574afd73ba3921da530 | p2@Pax8 |
| 1.77e-37 | FFCP PHASE1:Mm9::chr2:24331116..24331125,-#_d6f34a161cd4c574afd73ba3921da530 | p2@Pax8 |
| 2.59e-37 | FFCP PHASE2:Hg19::chr2:693380..693398,+#_a99393540cff09f78a1c304109e713cc | p@chr2:693380..693398, + |
| 2.59e-37 | FFCP PHASE1:Hg19::chr2:693380..693398,+#_a99393540cff09f78a1c304109e713cc | p@chr2:693380..693398, + |
| 4.67e-37 | FFCP PHASE2:Mm9::chr3:154257229..154257241,-#_53f5dd72050ed2a842a9b807f4ed368c | p@chr3:154257229..154257241, - |
| 4.67e-37 | FFCP PHASE2:Mm9::chr7:31244710..31244719,+#_53f5dd72050ed2a842a9b807f4ed368c | p4@Nphs1 |
| 4.67e-37 | FFCP PHASE1:Mm9::chr3:154257229..154257241,-#_53f5dd72050ed2a842a9b807f4ed368c | p@chr3:154257229..154257241, - |
| 4.67e-37 | FFCP PHASE1:Mm9::chr10:12353875..12353921,-#_53f5dd72050ed2a842a9b807f4ed368c | p@chr10:12353875..12353921, - |
| 4.67e-37 | FFCP PHASE1:Mm9::chr7:126785968..126785980,-#_53f5dd72050ed2a842a9b807f4ed368c | p2@uc009jll.1 |
| 4.67e-37 | FFCP PHASE1:Mm9::chr7:31244710..31244719,+#_53f5dd72050ed2a842a9b807f4ed368c | p4@Nphs1 |
| 4.67e-37 | FFCP PHASE2:Mm9::chr7:126785968..126785980,-#_53f5dd72050ed2a842a9b807f4ed368c | p2@uc009jll.1 |
| 4.67e-37 | FFCP PHASE2:Mm9::chr10:12353875..12353921,-#_53f5dd72050ed2a842a9b807f4ed368c | p@chr10:12353875..12353921, - |
| 6.25e-37 | FFCP PHASE2:Mm9::chr10:3291584..3291599,+#_eb547fba280fca7f74968eb0082b3fb0 | p@chr10:3291584..3291599, + |
| 6.25e-37 | FFCP PHASE1:Mm9::chr10:3291584..3291599,+#_eb547fba280fca7f74968eb0082b3fb0 | p@chr10:3291584..3291599, + |
| 6.33e-37 | FFCP PHASE2:Mm9::chr3:96637141..96637180,+#_0d5e41b4a2162e79a369673fbdabc7d0 | p4@Pdzk1 |
| 6.33e-37 | FFCP PHASE1:Mm9::chr3:96637141..96637180,+#_0d5e41b4a2162e79a369673fbdabc7d0 | p4@Pdzk1 |
| 8.04e-37 | FFCP PHASE1:Mm9::chr13:98786159..98786170,-#_adca8462c01f6f343da36170db29bd17 | p8@Rgnef |
| 8.04e-37 | FFCP PHASE2:Mm9::chr13:98786159..98786170,-#_adca8462c01f6f343da36170db29bd17 | p8@Rgnef |
| 9.21e-37 | FFCP PHASE1:Mm9::chr17:34764056..34764069,-#_6bc2b1cdd976917cfa69bf949134a07a | p9@Ppt2 |
| 9.21e-37 | FFCP PHASE2:Mm9::chr17:34764056..34764069,-#_6bc2b1cdd976917cfa69bf949134a07a | p9@Ppt2 |
| 1.19e-36 | FFCP PHASE1:Mm9::chr7:86741766..86741778,-#_68b8372616cbc68071e05ab46e680b84 | p@chr7:86741766..86741778, - |
| 1.19e-36 | FFCP PHASE1:Mm9::chr10:70107623..70107636,-#_68b8372616cbc68071e05ab46e680b84 | p@chr10:70107623..70107636, - |
Property "Property value" (as page type) with input value "UBPROP:0000001 "An anatomical system which consists of organs and tissues which produce, store, and excrete urine.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
