UBERON:0000115: Difference between revisions
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|located_in= | |located_in= | ||
|name=lung epithelium | |name=lung epithelium | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0002048 | |part_of=UBERON:0002048 | ||
Latest revision as of 17:06, 12 September 2014
| Name: | lung epithelium | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "the epithelial layer of the lung." [MP:0006382] | ||
| Xrefs: |
| ||
| Synonyms: |
"epithelial tissue of lung" EXACT [OBOL:automatic] "epithelium of lung" EXACT [OBOL:automatic] "lung epithelial tissue" EXACT [OBOL:automatic] "pulmonary epithelium" RELATED [BTO:0001653] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004815(lower respiratory tract epithelium) |
|---|---|
| develops_from: | UBERON:0001041(foregut) |
| part_of: | UBERON:0002048(lung) |
Children
| is a: | UBERON:0002169 (alveolar sac),UBERON:0004821 (pulmonary alveolus epithelium) |
|---|---|
| part of: | CL:0000082 (epithelial cell of lung) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10408-106B3 (lung adenocarcinoma cell line:PC-14)
- 10457-106G7 (squamous cell lung carcinoma cell line:LC-1F)
- 10462-106H3
- 10468-106H9
- 10472-106I4
- 10486-107A9 (squamous cell lung carcinoma cell line:EBC-1)
- 10499-107C4 (lung adenocarcinoma cell line:A549)
- 10500-107C5
- 10501-107C6 (squamous cell lung carcinoma cell line:RERF-LC-AI)
- 10502-107C7
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000115 (lung epithelium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.46e-24 | FFCP PHASE1:Hg19::chr2:233352573..233352580,-#_c87ca1d9ba3f42a24aa27154a623e9eb | p4@ECEL1 |
| 3.46e-24 | FFCP PHASE2:Hg19::chr2:233352573..233352580,-#_c87ca1d9ba3f42a24aa27154a623e9eb | p4@ECEL1 |
| 5.37e-22 | FFCP PHASE2:Hg19::chr6:45399263..45399274,+#_d2a2e3f04744b30241de83ce3c64951b | p@chr6:45399263..45399274, + |
| 5.37e-22 | FFCP PHASE1:Hg19::chr6:45399263..45399274,+#_d2a2e3f04744b30241de83ce3c64951b | p@chr6:45399263..45399274, + |
| 5.37e-22 | FFCP PHASE2:Hg19::chr6:45399294..45399301,+#_d2a2e3f04744b30241de83ce3c64951b | p@chr6:45399294..45399301, + |
| 5.37e-22 | FFCP PHASE1:Hg19::chr7:31938679..31938703,-#_d2a2e3f04744b30241de83ce3c64951b | p@chr7:31938679..31938703, - |
| 5.37e-22 | FFCP PHASE1:Hg19::chr6:45399294..45399301,+#_d2a2e3f04744b30241de83ce3c64951b | p@chr6:45399294..45399301, + |
| 5.37e-22 | FFCP PHASE2:Hg19::chr6:45405332..45405343,+#_d2a2e3f04744b30241de83ce3c64951b | p@chr6:45405332..45405343, + |
| 5.37e-22 | FFCP PHASE1:Hg19::chr6:45405332..45405343,+#_d2a2e3f04744b30241de83ce3c64951b | p@chr6:45405332..45405343, + |
| 5.37e-22 | FFCP PHASE1:Hg19::chr6:125378873..125378876,+#_d2a2e3f04744b30241de83ce3c64951b | p@chr6:125378873..125378876, + |
| 5.37e-22 | FFCP PHASE2:Hg19::chr7:31938679..31938703,-#_d2a2e3f04744b30241de83ce3c64951b | p@chr7:31938679..31938703, - |
| 5.37e-22 | FFCP PHASE2:Hg19::chr7:157944243..157944249,-#_d2a2e3f04744b30241de83ce3c64951b | p@chr7:157944243..157944249, - |
| 5.37e-22 | FFCP PHASE1:Hg19::chr7:157944243..157944249,-#_d2a2e3f04744b30241de83ce3c64951b | p@chr7:157944243..157944249, - |
| 5.37e-22 | FFCP PHASE2:Hg19::chr6:125378873..125378876,+#_d2a2e3f04744b30241de83ce3c64951b | p@chr6:125378873..125378876, + |
| 5.37e-22 | FFCP PHASE2:Hg19::chr6:45405393..45405412,+#_d2a2e3f04744b30241de83ce3c64951b | p@chr6:45405393..45405412, + |
| 5.37e-22 | FFCP PHASE2:Hg19::chr6:45399245..45399258,+#_d2a2e3f04744b30241de83ce3c64951b | p@chr6:45399245..45399258, + |
| 5.37e-22 | FFCP PHASE1:Hg19::chr6:45405393..45405412,+#_d2a2e3f04744b30241de83ce3c64951b | p@chr6:45405393..45405412, + |
| 5.37e-22 | FFCP PHASE1:Hg19::chr6:45399245..45399258,+#_d2a2e3f04744b30241de83ce3c64951b | p@chr6:45399245..45399258, + |
| 5.37e-22 | FFCP PHASE2:Hg19::chr6:45399533..45399540,+#_d2a2e3f04744b30241de83ce3c64951b | p@chr6:45399533..45399540, + |
| 5.37e-22 | FFCP PHASE1:Hg19::chr6:45399533..45399540,+#_d2a2e3f04744b30241de83ce3c64951b | p@chr6:45399533..45399540, + |
| 1.58e-19 | FFCP PHASE2:Hg19::chr6:73785930..73785949,-#_49c6a9baeced9b05a56b2609d16a6641 | p@chr6:73785930..73785949, - |
| 1.58e-19 | FFCP PHASE1:Hg19::chr6:73785930..73785949,-#_49c6a9baeced9b05a56b2609d16a6641 | p@chr6:73785930..73785949, - |
| 1.68e-19 | FFCP PHASE1:Hg19::chr10:5057199..5057247,-#_2654c1cd73ec5b4a1d83b60598451be9 | p@chr10:5057199..5057247, - |
| 1.68e-19 | FFCP PHASE2:Hg19::chr10:5057199..5057247,-#_2654c1cd73ec5b4a1d83b60598451be9 | p@chr10:5057199..5057247, - |
| 6.08e-19 | FFCP PHASE2:Hg19::chr1:161085273..161085285,+#_748b9396e05ffdf124cf17f2af93cf1f | p@chr1:161085273..161085285, + |
| 6.08e-19 | FFCP PHASE1:Hg19::chr1:161085273..161085285,+#_748b9396e05ffdf124cf17f2af93cf1f | p@chr1:161085273..161085285, + |
| 5.04e-17 | FFCP PHASE2:Hg19::chr14:36990061..36990072,-#_db41d3fd804954dbad1f187fc3389eb3 | p11@NKX2-1 |
| 5.04e-17 | FFCP PHASE1:Hg19::chr14:36990061..36990072,-#_db41d3fd804954dbad1f187fc3389eb3 | p11@NKX2-1 |
| 1.43e-16 | FFCP PHASE1:Hg19::chr8:63077406..63077421,-#_17aeb6909d171b2d1aaf56aabe3e23cb | p@chr8:63077406..63077421, - |
| 1.43e-16 | FFCP PHASE2:Hg19::chr8:63077406..63077421,-#_17aeb6909d171b2d1aaf56aabe3e23cb | p@chr8:63077406..63077421, - |
| 1.75e-16 | FFCP PHASE2:Hg19::chr14:36989407..36989410,-#_69e95017a21842d57e544db81b50453f | p15@NKX2-1 |
| 1.75e-16 | FFCP PHASE1:Hg19::chr14:36989407..36989410,-#_69e95017a21842d57e544db81b50453f | p15@NKX2-1 |
| 2.52e-16 | FFCP PHASE1:Hg19::chr2:194367545..194367554,+#_0f265d5b5b1c1818eeae5095349d6a5d | p@chr2:194367545..194367554, + |
| 2.52e-16 | FFCP PHASE2:Hg19::chr2:194367545..194367554,+#_0f265d5b5b1c1818eeae5095349d6a5d | p@chr2:194367545..194367554, + |
| 1.19e-15 | FFCP PHASE2:Hg19::chr14:36989412..36989423,-#_a7f5866cc20e03f3fcdb82e85637b2e9 | p12@NKX2-1 |
| 1.19e-15 | FFCP PHASE1:Hg19::chr14:36989412..36989423,-#_a7f5866cc20e03f3fcdb82e85637b2e9 | p12@NKX2-1 |
| 4.02e-15 | FFCP PHASE2:Hg19::chr20:22565370..22565388,-#_95961498fdaeabab473b40be8fbd81a5 | p2@FOXA2 |
| 4.02e-15 | FFCP PHASE1:Hg19::chr20:22565370..22565388,-#_95961498fdaeabab473b40be8fbd81a5 | p2@FOXA2 |
| 4.91e-15 | FFCP PHASE1:Hg19::chr11:69518332..69518343,-#_fb4b14fcd92f09b7859b93d537d43fe4 | p@chr11:69518332..69518343, - |
| 4.91e-15 | FFCP PHASE2:Hg19::chr13:70823810..70823813,+#_fb4b14fcd92f09b7859b93d537d43fe4 | p@chr13:70823810..70823813, + |
| 4.91e-15 | FFCP PHASE2:Hg19::chr7:1968190..1968198,-#_fb4b14fcd92f09b7859b93d537d43fe4 | p@chr7:1968190..1968198, - |
| 4.91e-15 | FFCP PHASE1:Hg19::chr7:1968190..1968198,-#_fb4b14fcd92f09b7859b93d537d43fe4 | p@chr7:1968190..1968198, - |
| 4.91e-15 | FFCP PHASE1:Hg19::chr8:40525350..40525354,-#_fb4b14fcd92f09b7859b93d537d43fe4 | p@chr8:40525350..40525354, - |
| 4.91e-15 | FFCP PHASE2:Hg19::chr12:57638896..57638928,-#_fb4b14fcd92f09b7859b93d537d43fe4 | p@chr12:57638896..57638928, - |
| 4.91e-15 | FFCP PHASE2:Hg19::chr6:45399724..45399733,+#_fb4b14fcd92f09b7859b93d537d43fe4 | p@chr6:45399724..45399733, + |
| 4.91e-15 | FFCP PHASE1:Hg19::chr6:45399724..45399733,+#_fb4b14fcd92f09b7859b93d537d43fe4 | p@chr6:45399724..45399733, + |
| 4.91e-15 | FFCP PHASE2:Hg19::chr7:1968200..1968208,-#_fb4b14fcd92f09b7859b93d537d43fe4 | p@chr7:1968200..1968208, - |
| 4.91e-15 | FFCP PHASE1:Hg19::chr5:92526866..92526914,-#_fb4b14fcd92f09b7859b93d537d43fe4 | p@chr5:92526866..92526914, - |
| 4.91e-15 | FFCP PHASE2:Hg19::chr8:40525350..40525354,-#_fb4b14fcd92f09b7859b93d537d43fe4 | p@chr8:40525350..40525354, - |
| 4.91e-15 | FFCP PHASE1:Hg19::chr7:1968200..1968208,-#_fb4b14fcd92f09b7859b93d537d43fe4 | p@chr7:1968200..1968208, - |
| 4.91e-15 | FFCP PHASE2:Hg19::chr11:69518108..69518118,-#_fb4b14fcd92f09b7859b93d537d43fe4 | p@chr11:69518108..69518118, - |
| 4.91e-15 | FFCP PHASE2:Hg19::chr6:73786593..73786601,+#_fb4b14fcd92f09b7859b93d537d43fe4 | p@chr6:73786593..73786601, + |
| 4.91e-15 | FFCP PHASE2:Hg19::chr5:92526866..92526914,-#_fb4b14fcd92f09b7859b93d537d43fe4 | p@chr5:92526866..92526914, - |
| 4.91e-15 | FFCP PHASE1:Hg19::chr6:73786593..73786601,+#_fb4b14fcd92f09b7859b93d537d43fe4 | p@chr6:73786593..73786601, + |
| 4.91e-15 | FFCP PHASE1:Hg19::chr13:70823810..70823813,+#_fb4b14fcd92f09b7859b93d537d43fe4 | p@chr13:70823810..70823813, + |
| 4.91e-15 | FFCP PHASE2:Hg19::chr11:69518332..69518343,-#_fb4b14fcd92f09b7859b93d537d43fe4 | p@chr11:69518332..69518343, - |
| 4.91e-15 | FFCP PHASE2:Hg19::chr6:45399422..45399430,+#_fb4b14fcd92f09b7859b93d537d43fe4 | p@chr6:45399422..45399430, + |
| 4.91e-15 | FFCP PHASE1:Hg19::chr12:57638896..57638928,-#_fb4b14fcd92f09b7859b93d537d43fe4 | p@chr12:57638896..57638928, - |
| 4.91e-15 | FFCP PHASE1:Hg19::chr6:45399422..45399430,+#_fb4b14fcd92f09b7859b93d537d43fe4 | p@chr6:45399422..45399430, + |
| 4.91e-15 | FFCP PHASE2:Hg19::chr6:73786620..73786627,+#_fb4b14fcd92f09b7859b93d537d43fe4 | p@chr6:73786620..73786627, + |
| 4.91e-15 | FFCP PHASE1:Hg19::chr4:3344434..3344441,+#_fb4b14fcd92f09b7859b93d537d43fe4 | p@chr4:3344434..3344441, + |
| 4.91e-15 | FFCP PHASE1:Hg19::chr6:73786620..73786627,+#_fb4b14fcd92f09b7859b93d537d43fe4 | p@chr6:73786620..73786627, + |
| 4.91e-15 | FFCP PHASE1:Hg19::chr11:69518108..69518118,-#_fb4b14fcd92f09b7859b93d537d43fe4 | p@chr11:69518108..69518118, - |
| 4.91e-15 | FFCP PHASE2:Hg19::chr4:3344434..3344441,+#_fb4b14fcd92f09b7859b93d537d43fe4 | p@chr4:3344434..3344441, + |
| 5.27e-15 | FFCP PHASE1:Hg19::chr12:53686428..53686432,+#_f1a56575a61ddd3aa601e0c0150cdc57 | p@chr12:53686428..53686432, + |
| 5.27e-15 | FFCP PHASE1:Hg19::chr4:3310694..3310716,-#_f1a56575a61ddd3aa601e0c0150cdc57 | p@chr4:3310694..3310716, - |
| 5.27e-15 | FFCP PHASE2:Hg19::chr16:19396252..19396261,+#_f1a56575a61ddd3aa601e0c0150cdc57 | p@chr16:19396252..19396261, + |
| 5.27e-15 | FFCP PHASE2:Hg19::chr4:3310694..3310716,-#_f1a56575a61ddd3aa601e0c0150cdc57 | p@chr4:3310694..3310716, - |
| 5.27e-15 | FFCP PHASE1:Hg19::chr7:44574294..44574303,-#_f1a56575a61ddd3aa601e0c0150cdc57 | p@chr7:44574294..44574303, - |
| 5.27e-15 | FFCP PHASE2:Hg19::chr7:44574294..44574303,-#_f1a56575a61ddd3aa601e0c0150cdc57 | p@chr7:44574294..44574303, - |
| 5.27e-15 | FFCP PHASE1:Hg19::chr18:10085554..10085562,+#_f1a56575a61ddd3aa601e0c0150cdc57 | p@chr18:10085554..10085562, + |
| 5.27e-15 | FFCP PHASE1:Hg19::chr5:77683792..77683799,+#_f1a56575a61ddd3aa601e0c0150cdc57 | p@chr5:77683792..77683799, + |
| 5.27e-15 | FFCP PHASE1:Hg19::chr16:19396252..19396261,+#_f1a56575a61ddd3aa601e0c0150cdc57 | p@chr16:19396252..19396261, + |
| 5.27e-15 | FFCP PHASE2:Hg19::chr12:53686428..53686432,+#_f1a56575a61ddd3aa601e0c0150cdc57 | p@chr12:53686428..53686432, + |
| 5.27e-15 | FFCP PHASE2:Hg19::chr5:77683792..77683799,+#_f1a56575a61ddd3aa601e0c0150cdc57 | p@chr5:77683792..77683799, + |
| 5.27e-15 | FFCP PHASE2:Hg19::chr18:10085554..10085562,+#_f1a56575a61ddd3aa601e0c0150cdc57 | p@chr18:10085554..10085562, + |
| 5.27e-15 | FFCP PHASE1:Hg19::chr19:6828544..6828554,+#_f1a56575a61ddd3aa601e0c0150cdc57 | p@chr19:6828544..6828554, + |
| 5.27e-15 | FFCP PHASE2:Hg19::chr19:6828544..6828554,+#_f1a56575a61ddd3aa601e0c0150cdc57 | p@chr19:6828544..6828554, + |
| 5.66e-15 | FFCP PHASE2:Hg19::chr18:71843159..71843180,+#_198228e478cd448d97dc32b99034b3de | p@chr18:71843159..71843180, + |
| 5.66e-15 | FFCP PHASE1:Hg19::chr18:72611750..72611755,+#_198228e478cd448d97dc32b99034b3de | p@chr18:72611750..72611755, + |
| 5.66e-15 | FFCP PHASE1:Hg19::chr6:18208425..18208436,+#_198228e478cd448d97dc32b99034b3de | p@chr6:18208425..18208436, + |
| 5.66e-15 | FFCP PHASE2:Hg19::chr18:72611750..72611755,+#_198228e478cd448d97dc32b99034b3de | p@chr18:72611750..72611755, + |
| 5.66e-15 | FFCP PHASE2:Hg19::chr6:18208425..18208436,+#_198228e478cd448d97dc32b99034b3de | p@chr6:18208425..18208436, + |
| 5.66e-15 | FFCP PHASE1:Hg19::chr2:233352641..233352675,+#_198228e478cd448d97dc32b99034b3de | p@chr2:233352641..233352675, + |
| 5.66e-15 | FFCP PHASE2:Hg19::chr2:233352641..233352675,+#_198228e478cd448d97dc32b99034b3de | p@chr2:233352641..233352675, + |
| 5.66e-15 | FFCP PHASE1:Hg19::chr1:156779602..156779619,-#_198228e478cd448d97dc32b99034b3de | p@chr1:156779602..156779619, - |
| 5.66e-15 | FFCP PHASE1:Hg19::chr18:71843121..71843138,+#_198228e478cd448d97dc32b99034b3de | p@chr18:71843121..71843138, + |
| 5.66e-15 | FFCP PHASE2:Hg19::chr1:156779602..156779619,-#_198228e478cd448d97dc32b99034b3de | p@chr1:156779602..156779619, - |
| 5.66e-15 | FFCP PHASE2:Hg19::chr18:71843121..71843138,+#_198228e478cd448d97dc32b99034b3de | p@chr18:71843121..71843138, + |
| 5.66e-15 | FFCP PHASE1:Hg19::chr18:71843159..71843180,+#_198228e478cd448d97dc32b99034b3de | p@chr18:71843159..71843180, + |
| 5.96e-15 | FFCP PHASE1:Hg19::chr14:36982724..36982767,-#_429fe73e3417038357b56a9e7b40c461 | p1@SFTA3 |
| 5.96e-15 | FFCP PHASE2:Hg19::chr14:36982724..36982767,-#_429fe73e3417038357b56a9e7b40c461 | p1@SFTA3 |
| 2.37e-14 | FFCP PHASE2:Hg19::chr11:123325116..123325128,+#_7453e114c76d47aca3444bd23e985964 | p4@ENST00000525757, p4@uc001pyv.1 |
| 2.37e-14 | FFCP PHASE1:Hg19::chr11:123325116..123325128,+#_7453e114c76d47aca3444bd23e985964 | p4@ENST00000525757, p4@uc001pyv.1 |
| 2.81e-14 | FFCP PHASE1:Hg19::chrY:59027988..59028000,+#_d3168dce6ea4c7c843d828853afc9552 | p@chrY:59027988..59028000, + |
| 2.81e-14 | FFCP PHASE2:Hg19::chrY:59027988..59028000,+#_d3168dce6ea4c7c843d828853afc9552 | p@chrY:59027988..59028000, + |
| 3.31e-14 | FFCP PHASE2:Hg19::chr14:36982935..36982943,-#_6d85a211c9934dc3788df37e26a36efc | p9@SFTA3 |
| 3.31e-14 | FFCP PHASE2:Hg19::chr11:17555398..17555410,-#_6d85a211c9934dc3788df37e26a36efc | p9@USH1C |
| 3.31e-14 | FFCP PHASE1:Hg19::chr14:36982935..36982943,-#_6d85a211c9934dc3788df37e26a36efc | p9@SFTA3 |
| 3.31e-14 | FFCP PHASE1:Hg19::chr11:17555398..17555410,-#_6d85a211c9934dc3788df37e26a36efc | p9@USH1C |
