FFCP PHASE1:Mm9::chr9:57982851..57982885,+: Difference between revisions
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{{FFCP|EntrezGene=20897|HGNC=|MCL_coexpression_id=77|UniProt=D3YXW9|association_with_transcript=234bp_to_ENSMUST00000134450_5end|description=CAGE_peak_4_at_Stra6_5end|id=chr9:57982851..57982885,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000991!5.93e-15!18;UBERON:0005564!5.93e-15!18;UBERON:0004176!5.28e-14!17;UBERON:0009196!5.28e-14!17;UBERON:0009117!5.28e-14!17;UBERON:0005156!1.49e-13!26;UBERON:0000990!1.49e-13!26;UBERON:0003133!1.67e-13!24;UBERON:0000473!2.51e-11!14;UBERON:0003135!2.76e-10!15;UBERON:0000970!4.99e-10!9;UBERON:0000019!4.99e-10!9;UBERON:0000047!4.99e-10!9;UBERON:0004088!4.99e-10!9;UBERON:0002104!4.99e-10!9;UBERON:0001456!4.99e-10!9;UBERON:0003072!4.99e-10!9;UBERON:0003071!4.99e-10!9;UBERON:0004128!4.99e-10!9;UBERON:0003101!2.22e-09!16;UBERON:0000079!2.22e-09!16;UBERON:0005085!5.09e-09!13;UBERON:0001444!1.07e-07!11;UBERON:0003056!2.08e-07!49;UBERON:0002346!4.52e-07!71;UBERON:0003075!4.52e-07!71;UBERON:0007284!4.52e-07!71;UBERON:0000020!7.82e-07!12;UBERON:0001032!7.82e-07!12;UBERON:0004456!7.82e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0000991,5.23e-28,18;UBERON:0005564,5.23e-28,18;UBERON:0004176,8.95e-26,17;UBERON:0009196,8.95e-26,17;UBERON:0009117,8.95e-26,17;UBERON:0000473,4.98e-23,14;UBERON:0003135,2.45e-21,15;UBERON:0005156,3.83e-21,26;UBERON:0000990,3.83e-21,26;UBERON:0003133,3.29e-20,24;UBERON:0003101,7.44e-20,16;UBERON:0000079,7.44e-20,16;UBERON:0000970,4.93e-18,9;UBERON:0000019,4.93e-18,9;UBERON:0000047,4.93e-18,9;UBERON:0010312,4.93e-18,9;UBERON:0004088,4.93e-18,9;UBERON:0002104,4.93e-18,9;UBERON:0001456,4.93e-18,9;UBERON:0003072,4.93e-18,9;UBERON:0004128,4.93e-18,9;UBERON:0003071,4.93e-18,9;UBERON:0001444,1.62e-14,11;UBERON:0000020,3.37e-13,12;UBERON:0001032,3.37e-13,12;UBERON:0004456,3.37e-13,12;UBERON:0000033,4.40e-12,13;UBERON:0005085,4.40e-12,13;UBERON:0002323,5.31e-12,37;UBERON:0004458,5.31e-12,37;UBERON:0003886,1.33e-11,38;UBERON:0002553,3.16e-11,39;UBERON:0003056,1.32e-07,49|phase1_expression=0,0,0,0,0,0.16787927191189,0,0.129123323441576,0,0,0,0,0,0,0,0,0,0,0,0,1.36069264241712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279972843250725,0,0,0,0,0,0,0,0,0,0,2.03306719241479,0,0,0,0,0.898800331555214,0.768436610643109,0.207379224616955,0.405017814995072,0,0,0.220868540951614,0.122490799214954,0,0,0,0,0,0,0.457438218012048,1.04182674111352,0,0,0.15279824777681,0,0.142371680799103,0.559198337475902,0,0.151143120213571,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253359865475099,0,0,0,0,0,0,0,0,0.823120949949934,0,0,0,0,0,0,0,0,0.292780797011547,1.04723353406728,0,0,0,0,0.149790639404823,0,0,0.173824320192276,0,0,0,0.712875546952214,0,0,3.99839526184301,0.650602214813519,1.14951052216736,1.26043490863744,1.20563854268572,2.31324097114515,2.17793324484245,2.15513966487376,3.88055056108524,0.431135985865684,0.378212160335639,0,0.219195732427575,0,0,0,1.79130840136644,0,0,0,0,0.234526059981096,0,0,0,0,0,0,0,0,0,0,0,0,0,2.52347938276953,0.514523061896422,0,0,0.213288250535234,0.464473343720877,0,0,0,0,0,0,0,0,0,0,0,0,1.13800740571849,0.799739588268102,2.25415471346161,0.407302655690628,0,0.210407459670956,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.757965647081939,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.983528546038072,0.275936746304732,0.80275294993896,0.117211686592203,0,0,0,0,0,0,0,0,0,0,0,0,0.851640511249612,2.49291845134157,1.14020871547503,1.31976098378028,0,0.242780636154981,0,0,0,0,0,0,0.356497378384721,0,0,0,0,0.36012218806262,0.905510786479282,1.92903331528433,1.06404140185364,1.96205699362278,0.987294123612726,1.8267896946876,0,0.21183207086382,0,0,0,0,0,0.164140899745061,0,0,0,0,0,0,0,0,0,0,0,0,0.158167996790568,0.203319467126849,0,0,0,0,0,0,0,0,3.94585057078933,1.04661582230785,1.65458490457098,4.66682852025714,3.09983576346555,3.54807863530634,5.39843297770468,15.2339130267422,13.6317147753424,6.28118714147616,2.88030006257865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187682475451182,0.36630324853453,0,0,0,0,0,0,0,0,0,0,0,0,0,0.798049746802062,0.170733605754134,0.486213434136588,0,0,0,0.206035057238894,0,0,0,0,0.187283014939765,0.128050304809739,0.17230640686684,0,0,0,0,0,0.342869252385415,0.177475806159338,0.715308569841963,0.145346416632329,0.0941093804153306,0.169229215783353,0,0,0,0.561142271657738,0.118635018124174,0,0,0,0.192906610981141,0.249810577937946,0,0.214871054048298,0,0,0|short_description=p4@Stra6}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:20897 | |||
|HGNC= | |||
|MCL_coexpression_id=77 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:D3YXW9 | |||
|association_with_transcript=234bp_to_ENSMUST00000134450_5end | |||
|cluster_id=chr9:57982851..57982885,+ | |||
|description=CAGE_peak_4_at_Stra6_5end | |||
|id=chr9:57982851..57982885,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000991!5.93e-15!18;UBERON:0005564!5.93e-15!18;UBERON:0004176!5.28e-14!17;UBERON:0009196!5.28e-14!17;UBERON:0009117!5.28e-14!17;UBERON:0005156!1.49e-13!26;UBERON:0000990!1.49e-13!26;UBERON:0003133!1.67e-13!24;UBERON:0000473!2.51e-11!14;UBERON:0003135!2.76e-10!15;UBERON:0000970!4.99e-10!9;UBERON:0000019!4.99e-10!9;UBERON:0000047!4.99e-10!9;UBERON:0004088!4.99e-10!9;UBERON:0002104!4.99e-10!9;UBERON:0001456!4.99e-10!9;UBERON:0003072!4.99e-10!9;UBERON:0003071!4.99e-10!9;UBERON:0004128!4.99e-10!9;UBERON:0003101!2.22e-09!16;UBERON:0000079!2.22e-09!16;UBERON:0005085!5.09e-09!13;UBERON:0001444!1.07e-07!11;UBERON:0003056!2.08e-07!49;UBERON:0002346!4.52e-07!71;UBERON:0003075!4.52e-07!71;UBERON:0007284!4.52e-07!71;UBERON:0000020!7.82e-07!12;UBERON:0001032!7.82e-07!12;UBERON:0004456!7.82e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000991,5.23e-28,18;UBERON:0005564,5.23e-28,18;UBERON:0004176,8.95e-26,17;UBERON:0009196,8.95e-26,17;UBERON:0009117,8.95e-26,17;UBERON:0000473,4.98e-23,14;UBERON:0003135,2.45e-21,15;UBERON:0005156,3.83e-21,26;UBERON:0000990,3.83e-21,26;UBERON:0003133,3.29e-20,24;UBERON:0003101,7.44e-20,16;UBERON:0000079,7.44e-20,16;UBERON:0000970,4.93e-18,9;UBERON:0000019,4.93e-18,9;UBERON:0000047,4.93e-18,9;UBERON:0010312,4.93e-18,9;UBERON:0004088,4.93e-18,9;UBERON:0002104,4.93e-18,9;UBERON:0001456,4.93e-18,9;UBERON:0003072,4.93e-18,9;UBERON:0004128,4.93e-18,9;UBERON:0003071,4.93e-18,9;UBERON:0001444,1.62e-14,11;UBERON:0000020,3.37e-13,12;UBERON:0001032,3.37e-13,12;UBERON:0004456,3.37e-13,12;UBERON:0000033,4.40e-12,13;UBERON:0005085,4.40e-12,13;UBERON:0002323,5.31e-12,37;UBERON:0004458,5.31e-12,37;UBERON:0003886,1.33e-11,38;UBERON:0002553,3.16e-11,39;UBERON:0003056,1.32e-07,49 | |||
|phase1_expression=0,0,0,0,0,0.16787927191189,0,0.129123323441576,0,0,0,0,0,0,0,0,0,0,0,0,1.36069264241712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279972843250725,0,0,0,0,0,0,0,0,0,0,2.03306719241479,0,0,0,0,0.898800331555214,0.768436610643109,0.207379224616955,0.405017814995072,0,0,0.220868540951614,0.122490799214954,0,0,0,0,0,0,0.457438218012048,1.04182674111352,0,0,0.15279824777681,0,0.142371680799103,0.559198337475902,0,0.151143120213571,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253359865475099,0,0,0,0,0,0,0,0,0.823120949949934,0,0,0,0,0,0,0,0,0.292780797011547,1.04723353406728,0,0,0,0,0.149790639404823,0,0,0.173824320192276,0,0,0,0.712875546952214,0,0,3.99839526184301,0.650602214813519,1.14951052216736,1.26043490863744,1.20563854268572,2.31324097114515,2.17793324484245,2.15513966487376,3.88055056108524,0.431135985865684,0.378212160335639,0,0.219195732427575,0,0,0,1.79130840136644,0,0,0,0,0.234526059981096,0,0,0,0,0,0,0,0,0,0,0,0,0,2.52347938276953,0.514523061896422,0,0,0.213288250535234,0.464473343720877,0,0,0,0,0,0,0,0,0,0,0,0,1.13800740571849,0.799739588268102,2.25415471346161,0.407302655690628,0,0.210407459670956,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.757965647081939,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.983528546038072,0.275936746304732,0.80275294993896,0.117211686592203,0,0,0,0,0,0,0,0,0,0,0,0,0.851640511249612,2.49291845134157,1.14020871547503,1.31976098378028,0,0.242780636154981,0,0,0,0,0,0,0.356497378384721,0,0,0,0,0.36012218806262,0.905510786479282,1.92903331528433,1.06404140185364,1.96205699362278,0.987294123612726,1.8267896946876,0,0.21183207086382,0,0,0,0,0,0.164140899745061,0,0,0,0,0,0,0,0,0,0,0,0,0.158167996790568,0.203319467126849,0,0,0,0,0,0,0,0,3.94585057078933,1.04661582230785,1.65458490457098,4.66682852025714,3.09983576346555,3.54807863530634,5.39843297770468,15.2339130267422,13.6317147753424,6.28118714147616,2.88030006257865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187682475451182,0.36630324853453,0,0,0,0,0,0,0,0,0,0,0,0,0,0.798049746802062,0.170733605754134,0.486213434136588,0,0,0,0.206035057238894,0,0,0,0,0.187283014939765,0.128050304809739,0.17230640686684,0,0,0,0,0,0.342869252385415,0.177475806159338,0.715308569841963,0.145346416632329,0.0941093804153306,0.169229215783353,0,0,0,0.561142271657738,0.118635018124174,0,0,0,0.192906610981141,0.249810577937946,0,0.214871054048298,0,0,0 | |||
|short_description=p4@Stra6 | |||
}} |
Revision as of 09:30, 5 August 2015
Short description: | p4@Stra6 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Stra6_5end |
Coexpression cluster: | MCL_coexpression_mm9:77 |
Association with transcript: | 234bp_to_ENSMUST00000134450_5end |
EntrezGene: | 20897 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
gonad | 5.23e-28 | 18 |
gonad primordium | 5.23e-28 | 18 |
external genitalia | 8.95e-26 | 17 |
indifferent external genitalia | 8.95e-26 | 17 |
indifferent gonad | 8.95e-26 | 17 |
testis | 4.98e-23 | 14 |
male reproductive organ | 2.45e-21 | 15 |
reproductive structure | 3.83e-21 | 26 |
reproductive system | 3.83e-21 | 26 |
reproductive organ | 3.29e-20 | 24 |
male organism | 7.44e-20 | 16 |
male reproductive system | 7.44e-20 | 16 |
eye | 4.93e-18 | 9 |
camera-type eye | 4.93e-18 | 9 |
simple eye | 4.93e-18 | 9 |
immature eye | 4.93e-18 | 9 |
ocular region | 4.93e-18 | 9 |
visual system | 4.93e-18 | 9 |
face | 4.93e-18 | 9 |
optic cup | 4.93e-18 | 9 |
optic vesicle | 4.93e-18 | 9 |
eye primordium | 4.93e-18 | 9 |
subdivision of head | 1.62e-14 | 11 |
sense organ | 3.37e-13 | 12 |
sensory system | 3.37e-13 | 12 |
entire sense organ system | 3.37e-13 | 12 |
head | 4.40e-12 | 13 |
ectodermal placode | 4.40e-12 | 13 |
body cavity | 5.31e-12 | 37 |
body cavity or lining | 5.31e-12 | 37 |
body cavity precursor | 1.33e-11 | 38 |
anatomical cavity | 3.16e-11 | 39 |
pre-chordal neural plate | 1.32e-07 | 49 |