FFCP PHASE1:Hg19::chr6:75862119..75862155,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=not supported | |||
|DPIdataset=robust | |||
|EntrezGene=1303 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2188 | |||
|TSSclassifier=not | |||
|UniProt= | |||
|association_with_transcript=-214bp_to_ENST00000419671_5end | |||
|coexpression_cluster_id=C259 | |||
|description=CAGE_peak_7_at_COL12A1_5end | |||
|id=chr6:75862119..75862155,- | |||
|ontology_enrichment_celltype=CL:0000057!1.97e-12!75;CL:0000055!2.16e-11!180;CL:0000499!1.18e-09!27;CL:0002620!1.22e-09!23;CL:0000136!3.79e-07!15;CL:0002334!6.16e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0000153;2.51e-16;9!CL:0000447;2.51e-16;9!CL:0000138;3.80e-13;6!CL:0000327;5.58e-12;15!CL:0000136;1.63e-11;13!CL:0000499;2.50e-11;28!CL:0002620;3.33e-11;23!CL:0000135;9.67e-11;3!CL:0000388;9.67e-11;3!CL:0002580;1.03e-10;3!CL:0002579;1.39e-10;3!CL:0002615;2.03e-10;3!CL:0002334;2.23e-09;12!CL:0002617;7.73e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000153,2.47e-16,9;CL:0000447,2.47e-16,9;CL:0000057,4.25e-14,76;CL:0000058,4.44e-13,6;CL:0000138,4.44e-13,6;CL:0000327,5.11e-12,15;CL:0000499,2.36e-11,28;CL:0002620,2.75e-11,23;CL:0000135,9.71e-11,3;CL:0000388,9.71e-11,3;CL:0002580,1.07e-10,3;CL:0002579,1.18e-10,3;CL:0002615,1.72e-10,3;CL:0000136,6.92e-10,15;CL:0002334,2.10e-09,12;CL:0002617,7.38e-08,2;CL:0000134,3.13e-07,354;CL:0002320,6.83e-07,361 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!1.98e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:17;3.42e-15;5!DOID:450;3.42e-15;5!DOID:66;3.42e-15;5!DOID:423;3.42e-15;5!DOID:0080000;3.42e-15;5!DOID:11722;3.42e-15;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,3.44e-15,5;DOID:450,3.44e-15,5;DOID:66,3.44e-15,5;DOID:423,3.44e-15,5;DOID:0080000,3.44e-15,5;DOID:11722,3.44e-15,5 | |||
|ontology_enrichment_uberon=UBERON:0003102!2.20e-09!95;UBERON:0002199!7.28e-09!45;UBERON:0002416!7.28e-09!45;UBERON:0003688!5.53e-08!6;UBERON:0002358!5.53e-08!6;UBERON:0003684!5.53e-08!6;UBERON:0001178!5.53e-08!6;UBERON:0004457!6.96e-08!12;UBERON:0000042!6.96e-08!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;8.10e-22;9!UBERON:0000042;8.10e-22;9!UBERON:0003688;2.81e-19;6!UBERON:0002358;2.81e-19;6!UBERON:0003684;2.81e-19;6!UBERON:0001178;2.81e-19;6!UBERON:0007846;9.67e-11;3!UBERON:0000043;9.67e-11;3!UBERON:0007845;9.67e-11;3!UBERON:0001443;1.92e-10;11!UBERON:0000310;3.39e-08;10!UBERON:0002097;6.81e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,2.01e-19,6;UBERON:0002358,2.01e-19,6;UBERON:0003684,2.01e-19,6;UBERON:0001178,2.01e-19,6;UBERON:0004457,3.89e-16,12;UBERON:0000042,3.89e-16,12;UBERON:0007846,9.71e-11,3;UBERON:0000043,9.71e-11,3;UBERON:0007845,9.71e-11,3;UBERON:0001443,1.96e-10,11;UBERON:0002199,3.07e-08,46;UBERON:0002416,3.07e-08,46;UBERON:0000310,3.37e-08,10;UBERON:0002097,4.72e-08,41;UBERON:0002384,5.38e-07,371 | |||
|phase1_expression=5.81370813665781,13.7024335290229,2.67813367782345,7.00513088471913,3.5756887554183,12.2127393374052,2.53299878168311,0.631719873426831,0.261185628199839,0,0,0,0.263766978228454,0.123766352960047,0.662794751455832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0.12786256184353,2.1686349143074,2.00535164254356,6.66293987219789,2.3858578411533,3.40644409211845,0.283604451492204,0,1.22968699970376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.98183171017191,0,0,0.573673241497627,0,0.560677600142307,1.06748995729705,0,0.311211035399766,0,0,0,0,0,0,0,0,0.117434498643765,0.323745888736263,0,0.61246251376468,0.122834317311768,0.206651562351531,0,1.97813543422845,0,0,0.336672227908132,0,0.277064115484183,0,0.612975591598039,0.300476117813194,0.113432183160021,2.15267562826634,5.97960688691989,3.60284231971255,1.20036438433761,1.33968288009971,5.15281080091258,1.67505170698431,0.337552664482532,0.779496041289589,1.51460264546469,2.11714766877288,0.969876340912871,2.4850671476163,0.604512589365842,0.339121184620975,0.193260853163297,0,0,0,0,0,0,0,0,0,3.21620469096443,0,0,0.721879481669586,0.473227200159376,0.168584690078102,0.241011029883482,0.110293972732394,0.435758888184812,0,0,0.196221465125346,0.38474715694639,0,0,0,0,0,0,0,0,0,0.171567810298526,0.329250856225877,0,0.100528972411631,0,0,0,1.44331342025273,0.34779121492523,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0.290633938513962,1.15014803749563,0,0,0,0,0,0,0,0,0,0,0.300343057843917,0,0,0,0.1466765716419,0.129271715757778,0,1.690605505112,0.26593811658487,1.04007436911366,0,0,0,0.285955987316295,0,0,0,0.355391948742546,0.791951872933429,0,0,0,0,0,0,0,0,0,0.144781306667579,0.410952645100767,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0.36807447515742,0,0.271265023699736,2.07970861530807,4.28229573113188,0.315404830067869,1.05427273493442,0.902838299183157,0,0,0,0,0.695068915744663,0,0,0,0,0,0,0,0.604780586659361,3.2254015016441,5.67809301165831,11.507063871756,2.94720043288112,7.16390148693385,6.59501076688791,0,0.154209693802656,0.177561725313127,0.164254312027618,0,0.116210378459959,0.120859449591622,0.200506470303285,0,0.34444334449382,0.728364672026868,0.262248829918848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0,0,0.27470839445503,0.247528499761764,0,0,0,0.096670718292122,0.308097234229289,0.307007349452259,0,0.322260734604821,0.290033387828457,0.255679882248303,0.801288320820636,0,0,0.127612712494584,0.10115778085555,0,0.31481234683064,0,0,0,0,0.18532421910392,0,0,0,0.571890581771475,0,1.28381696410176,0,0,0.539617372749944,0.823611089208164,0.706874414074119,0,0,0.421258456238981,0,0.243713489631284,0,0.818999468447914,1.69686518344455,0,0,0.66343897524122,0,0,0,0.202910376962704,0,0,0.143411352204052,0.687743287091848,0,0,2.9555068941673,2.30506425071931,0,0.699869440489966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0,2.07875276582847,0,0,0,0.222617410045812,0,0,0.796991953004279,0,0,0,0,0.311039587661807,0,0,0,0.295930216910801,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.59518878185802,0,0,0,0,0.641183153813036,1.06606955203727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.61804353109152,0,0,0,0,0,0,0,0.252746318513952,0,0,0,0,0,0,0,0.138674673013139,0.347119476670262,0,0,0,0,0,0.365446585430928,0.246346371159628,0.290967049465258,0,1.12990370390266,0,0,0,0,0,0.213452994739353,0.19980960958213,0,0,0,0,0,0,0,0,0.305994652908965,0,0,0.136905378891993,0,0,0,0.837847203816763,0,0,0.199679000498991,0,0,0,1.44119953416961,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0,0,0,0,0,0,0,0,0,2.034148301238,0.542999601753713,0,0,0,0,0.170388021785422,0.113312091520126,0,0,0,0.13223260174269,0,0,0,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0.467426619694449,0.554805861502613,0.757612021100357,1.25783950876288,0,0,0.302461847526478,0,0,0.796483835818512,0,0.465788870628778,0.414706207840855,1.32920857278997,1.5652351854352,0.751288044986092,0.380805212168795,0,0.181848659202559,0.429642228169954,0.464033759878494,1.19428766609585,0,0.343395705182793,0.336749488765919,0,0,0.428883182749851,0.521988583930423,0,0,0,1.25362188757041,0.617602894321944,0.219284049578707,0,0,0,0,0.690860683462397,0.303859956177382,0,0,0,0,0.655219697692825,0.491545817507439,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212574920101683,0,0,0.318004350653419,0,0,0.705351887381368,3.3687002508852,0.0642292250964595,0,0,0,0.252071696221718,0,0,0,0,0,0,0,0,0,0,0.225630985047772,0,0,0,0.327543835020193,0,0,0,0.206686796501184,0,0,0,0.992422356778588,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0.801711364730253,0,0,0,0,0,0,0.846774100381858,0.4582137370881,0,0.955538938977433,0.111855431797792,0,0,0,0,2.3196288626764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| |||
|short_description=p7@COL12A1 | |||
}} |
Revision as of 12:43, 22 January 2014
Short description: | p7@COL12A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | No |
Description: | CAGE_peak_7_at_COL12A1_5end |
Coexpression cluster: | C259_Preadipocyte_Adipocyte_Fibroblast_Chondrocyte_tenocyte_normal_Ewing |
Association with transcript: | -214bp_to_ENST00000419671_5end |
EntrezGene: | COL12A1 |
HGNC: | 2188 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 2.47e-16 | 9 |
carbohydrate secreting cell | 2.47e-16 | 9 |
fibroblast | 4.25e-14 | 76 |
chondroblast | 4.44e-13 | 6 |
chondrocyte | 4.44e-13 | 6 |
extracellular matrix secreting cell | 5.11e-12 | 15 |
stromal cell | 2.36e-11 | 28 |
skin fibroblast | 2.75e-11 | 23 |
fibrocyte | 9.71e-11 | 3 |
tendon cell | 9.71e-11 | 3 |
preadipocyte of the breast | 1.07e-10 | 3 |
omentum preadipocyte | 1.18e-10 | 3 |
adipocyte of omentum tissue | 1.72e-10 | 3 |
fat cell | 6.92e-10 | 15 |
preadipocyte | 2.10e-09 | 12 |
adipocyte of breast | 7.38e-08 | 2 |
mesenchymal cell | 3.13e-07 | 354 |
connective tissue cell | 6.83e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
omentum | 2.01e-19 | 6 |
peritoneum | 2.01e-19 | 6 |
abdominal cavity | 2.01e-19 | 6 |
visceral peritoneum | 2.01e-19 | 6 |
cavity lining | 3.89e-16 | 12 |
serous membrane | 3.89e-16 | 12 |
dense regular connective tissue | 9.71e-11 | 3 |
tendon | 9.71e-11 | 3 |
regular connective tissue | 9.71e-11 | 3 |
chest | 1.96e-10 | 11 |
integument | 3.07e-08 | 46 |
integumental system | 3.07e-08 | 46 |
breast | 3.37e-08 | 10 |
skin of body | 4.72e-08 | 41 |
connective tissue | 5.38e-07 | 371 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 3.44e-15 | 5 |
myotonic disease | 3.44e-15 | 5 |
muscle tissue disease | 3.44e-15 | 5 |
myopathy | 3.44e-15 | 5 |
muscular disease | 3.44e-15 | 5 |
myotonic dystrophy | 3.44e-15 | 5 |