FFCP PHASE1:Mm9::chr2:105515586..105515606,+: Difference between revisions
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{{FFCP|EntrezGene=18508|HGNC=|MCL_coexpression_id=2320|UniProt=P63015|association_with_transcript=0bp_to_ENSMUST00000111085_5end|description=CAGE_peak_4_at_Pax6_5end|id=chr2:105515586..105515606,+|ontology_enrichment_celltype=CL:0000117!1.16e-17!23;CL:0000337!1.16e-17!23;CL:0002319!9.19e-11!43;CL:0000221!2.68e-10!44;CL:0000133!2.68e-10!44;CL:0000540!9.00e-10!33;CL:0000047!9.00e-10!33;CL:0000031!9.00e-10!33;CL:0000404!9.00e-10!33;CL:0000055!5.93e-08!50;CL:0000393!4.02e-07!39;CL:0000211!4.02e-07!39;CL:0002609!4.24e-07!6|ontology_enrichment_celltype_v019_2=CL:0000117,3.41e-18,23;CL:0000337,3.41e-18,23;CL:0002609,1.72e-11,6;CL:0000540,2.55e-11,33;CL:0000047,2.55e-11,33;CL:0000031,2.55e-11,33;CL:0000404,2.55e-11,33;CL:0002319,4.72e-10,43;CL:0000221,1.03e-09,44;CL:0000133,1.03e-09,44;CL:0000393,6.40e-09,39;CL:0000211,6.40e-09,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!5.61e-32!63;UBERON:0003056!3.46e-30!49;UBERON:0002346!4.40e-29!71;UBERON:0003075!4.40e-29!71;UBERON:0007284!4.40e-29!71;UBERON:0001049!1.40e-27!52;UBERON:0005068!1.40e-27!52;UBERON:0006241!1.40e-27!52;UBERON:0007135!1.40e-27!52;UBERON:0001017!4.18e-26!73;UBERON:0005743!4.18e-26!73;UBERON:0000955!6.32e-26!50;UBERON:0006238!6.32e-26!50;UBERON:0002616!5.68e-25!49;UBERON:0000073!7.19e-25!75;UBERON:0001016!7.19e-25!75;UBERON:0004121!8.09e-24!102;UBERON:0000924!8.09e-24!102;UBERON:0006601!8.09e-24!102;UBERON:0003080!6.64e-21!40;UBERON:0002780!1.59e-20!39;UBERON:0001890!1.59e-20!39;UBERON:0006240!1.59e-20!39;UBERON:0002020!2.92e-19!34;UBERON:0007811!3.83e-18!86;UBERON:0002791!1.06e-15!29;UBERON:0003528!1.06e-15!29;UBERON:0001893!1.06e-15!29;UBERON:0000153!5.09e-15!94;UBERON:0000956!1.06e-10!21;UBERON:0001869!1.06e-10!21;UBERON:0000203!1.06e-10!21;UBERON:0000970!1.91e-10!9;UBERON:0000019!1.91e-10!9;UBERON:0000047!1.91e-10!9;UBERON:0004088!1.91e-10!9;UBERON:0002104!1.91e-10!9;UBERON:0001456!1.91e-10!9;UBERON:0003072!1.91e-10!9;UBERON:0003071!1.91e-10!9;UBERON:0004128!1.91e-10!9;UBERON:0001444!6.18e-08!11;UBERON:0002619!9.19e-08!17;UBERON:0003076!3.83e-07!12;UBERON:0003057!3.83e-07!12;UBERON:0000020!5.23e-07!12;UBERON:0001032!5.23e-07!12;UBERON:0004456!5.23e-07!12;UBERON:0001954!5.93e-07!7;UBERON:0003022!5.93e-07!7;UBERON:0002421!5.93e-07!7;UBERON:0000349!5.93e-07!7;UBERON:0002600!5.93e-07!7|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.76e-30,64;UBERON:0003075,1.76e-30,64;UBERON:0007284,1.76e-30,64;UBERON:0003056,1.21e-28,49;UBERON:0010371,1.65e-25,73;UBERON:0004121,2.17e-25,95;UBERON:0000924,2.17e-25,95;UBERON:0006601,2.17e-25,95;UBERON:0000073,1.01e-19,54;UBERON:0001049,3.01e-19,52;UBERON:0005068,3.01e-19,52;UBERON:0006241,3.01e-19,52;UBERON:0007135,3.01e-19,52;UBERON:0001017,6.03e-19,73;UBERON:0010314,3.21e-18,92;UBERON:0001016,3.32e-18,75;UBERON:0000970,1.79e-17,9;UBERON:0000019,1.79e-17,9;UBERON:0000047,1.79e-17,9;UBERON:0010312,1.79e-17,9;UBERON:0004088,1.79e-17,9;UBERON:0002104,1.79e-17,9;UBERON:0001456,1.79e-17,9;UBERON:0003072,1.79e-17,9;UBERON:0004128,1.79e-17,9;UBERON:0003071,1.79e-17,9;UBERON:0000955,2.99e-17,47;UBERON:0006238,2.99e-17,47;UBERON:0002780,4.26e-16,39;UBERON:0001890,4.26e-16,39;UBERON:0006240,4.26e-16,39;UBERON:0002616,4.96e-16,46;UBERON:0003080,1.51e-15,40;UBERON:0002020,3.47e-14,34;UBERON:0001444,6.96e-14,11;UBERON:0000020,1.54e-12,12;UBERON:0001032,1.54e-12,12;UBERON:0004456,1.54e-12,12;UBERON:0000033,2.10e-11,13;UBERON:0005085,2.10e-11,13;UBERON:0003528,1.27e-10,29;UBERON:0002791,1.27e-10,29;UBERON:0001893,1.27e-10,29;UBERON:0001954,9.05e-09,7;UBERON:0003022,9.05e-09,7;UBERON:0002421,9.05e-09,7;UBERON:0000349,9.05e-09,7;UBERON:0002600,9.05e-09,7;UBERON:0000956,3.35e-08,21;UBERON:0001869,3.35e-08,21;UBERON:0000203,3.35e-08,21;UBERON:0001894,9.17e-07,10;UBERON:0006222,9.17e-07,10|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10556277196391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872100625521786,0.878744730937887,1.94429899074283,0.55994568650145,0,0,0,0,0,0,0,1.01158230429799,2.11596391708813,1.26766280701236,0,0.889294796111139,0,0,0,0.299600110518405,1.92109152660777,11.1984781293156,7.83034442323806,11.9885227970288,1.14260393761521,1.10434270475807,4.65465037016825,3.35459148563827,2.75765635983006,1.10115880999389,0.255374676170375,0.768032666281217,5.14356522147756,3.47653045689157,5.2091337055676,0.558365998002762,0.56276261003168,0.61119299110724,0.883885756421003,1.85083185038834,2.23679334990361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.49064311333487,7.12118803165747,0,0,0,0,0.449371918214468,0.457500602818626,1.38219787324151,0.347648640384553,0.511430914660661,1.0389402227978,0.324482526135515,0,0,0,5.6819301089348,11.0602376518298,11.9549094305406,15.6654052930654,15.8240058727501,11.9744238506337,14.476850392188,8.15205003669641,3.88055056108524,0,0,0,0,0,0,0,0.398068533636986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134206418760372,1.47202963994889,2.36680608472354,0,0,0,0,0,0,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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:18508 | |||
|HGNC= | |||
|MCL_coexpression_id=2320 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:P63015 | |||
|association_with_transcript=0bp_to_ENSMUST00000111085_5end | |||
|cluster_id=chr2:105515586..105515606,+ | |||
|description=CAGE_peak_4_at_Pax6_5end | |||
|id=chr2:105515586..105515606,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.16e-17!23;CL:0000337!1.16e-17!23;CL:0002319!9.19e-11!43;CL:0000221!2.68e-10!44;CL:0000133!2.68e-10!44;CL:0000540!9.00e-10!33;CL:0000047!9.00e-10!33;CL:0000031!9.00e-10!33;CL:0000404!9.00e-10!33;CL:0000055!5.93e-08!50;CL:0000393!4.02e-07!39;CL:0000211!4.02e-07!39;CL:0002609!4.24e-07!6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.41e-18,23;CL:0000337,3.41e-18,23;CL:0002609,1.72e-11,6;CL:0000540,2.55e-11,33;CL:0000047,2.55e-11,33;CL:0000031,2.55e-11,33;CL:0000404,2.55e-11,33;CL:0002319,4.72e-10,43;CL:0000221,1.03e-09,44;CL:0000133,1.03e-09,44;CL:0000393,6.40e-09,39;CL:0000211,6.40e-09,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!5.61e-32!63;UBERON:0003056!3.46e-30!49;UBERON:0002346!4.40e-29!71;UBERON:0003075!4.40e-29!71;UBERON:0007284!4.40e-29!71;UBERON:0001049!1.40e-27!52;UBERON:0005068!1.40e-27!52;UBERON:0006241!1.40e-27!52;UBERON:0007135!1.40e-27!52;UBERON:0001017!4.18e-26!73;UBERON:0005743!4.18e-26!73;UBERON:0000955!6.32e-26!50;UBERON:0006238!6.32e-26!50;UBERON:0002616!5.68e-25!49;UBERON:0000073!7.19e-25!75;UBERON:0001016!7.19e-25!75;UBERON:0004121!8.09e-24!102;UBERON:0000924!8.09e-24!102;UBERON:0006601!8.09e-24!102;UBERON:0003080!6.64e-21!40;UBERON:0002780!1.59e-20!39;UBERON:0001890!1.59e-20!39;UBERON:0006240!1.59e-20!39;UBERON:0002020!2.92e-19!34;UBERON:0007811!3.83e-18!86;UBERON:0002791!1.06e-15!29;UBERON:0003528!1.06e-15!29;UBERON:0001893!1.06e-15!29;UBERON:0000153!5.09e-15!94;UBERON:0000956!1.06e-10!21;UBERON:0001869!1.06e-10!21;UBERON:0000203!1.06e-10!21;UBERON:0000970!1.91e-10!9;UBERON:0000019!1.91e-10!9;UBERON:0000047!1.91e-10!9;UBERON:0004088!1.91e-10!9;UBERON:0002104!1.91e-10!9;UBERON:0001456!1.91e-10!9;UBERON:0003072!1.91e-10!9;UBERON:0003071!1.91e-10!9;UBERON:0004128!1.91e-10!9;UBERON:0001444!6.18e-08!11;UBERON:0002619!9.19e-08!17;UBERON:0003076!3.83e-07!12;UBERON:0003057!3.83e-07!12;UBERON:0000020!5.23e-07!12;UBERON:0001032!5.23e-07!12;UBERON:0004456!5.23e-07!12;UBERON:0001954!5.93e-07!7;UBERON:0003022!5.93e-07!7;UBERON:0002421!5.93e-07!7;UBERON:0000349!5.93e-07!7;UBERON:0002600!5.93e-07!7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.76e-30,64;UBERON:0003075,1.76e-30,64;UBERON:0007284,1.76e-30,64;UBERON:0003056,1.21e-28,49;UBERON:0010371,1.65e-25,73;UBERON:0004121,2.17e-25,95;UBERON:0000924,2.17e-25,95;UBERON:0006601,2.17e-25,95;UBERON:0000073,1.01e-19,54;UBERON:0001049,3.01e-19,52;UBERON:0005068,3.01e-19,52;UBERON:0006241,3.01e-19,52;UBERON:0007135,3.01e-19,52;UBERON:0001017,6.03e-19,73;UBERON:0010314,3.21e-18,92;UBERON:0001016,3.32e-18,75;UBERON:0000970,1.79e-17,9;UBERON:0000019,1.79e-17,9;UBERON:0000047,1.79e-17,9;UBERON:0010312,1.79e-17,9;UBERON:0004088,1.79e-17,9;UBERON:0002104,1.79e-17,9;UBERON:0001456,1.79e-17,9;UBERON:0003072,1.79e-17,9;UBERON:0004128,1.79e-17,9;UBERON:0003071,1.79e-17,9;UBERON:0000955,2.99e-17,47;UBERON:0006238,2.99e-17,47;UBERON:0002780,4.26e-16,39;UBERON:0001890,4.26e-16,39;UBERON:0006240,4.26e-16,39;UBERON:0002616,4.96e-16,46;UBERON:0003080,1.51e-15,40;UBERON:0002020,3.47e-14,34;UBERON:0001444,6.96e-14,11;UBERON:0000020,1.54e-12,12;UBERON:0001032,1.54e-12,12;UBERON:0004456,1.54e-12,12;UBERON:0000033,2.10e-11,13;UBERON:0005085,2.10e-11,13;UBERON:0003528,1.27e-10,29;UBERON:0002791,1.27e-10,29;UBERON:0001893,1.27e-10,29;UBERON:0001954,9.05e-09,7;UBERON:0003022,9.05e-09,7;UBERON:0002421,9.05e-09,7;UBERON:0000349,9.05e-09,7;UBERON:0002600,9.05e-09,7;UBERON:0000956,3.35e-08,21;UBERON:0001869,3.35e-08,21;UBERON:0000203,3.35e-08,21;UBERON:0001894,9.17e-07,10;UBERON:0006222,9.17e-07,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10556277196391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872100625521786,0.878744730937887,1.94429899074283,0.55994568650145,0,0,0,0,0,0,0,1.01158230429799,2.11596391708813,1.26766280701236,0,0.889294796111139,0,0,0,0.299600110518405,1.92109152660777,11.1984781293156,7.83034442323806,11.9885227970288,1.14260393761521,1.10434270475807,4.65465037016825,3.35459148563827,2.75765635983006,1.10115880999389,0.255374676170375,0.768032666281217,5.14356522147756,3.47653045689157,5.2091337055676,0.558365998002762,0.56276261003168,0.61119299110724,0.883885756421003,1.85083185038834,2.23679334990361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.49064311333487,7.12118803165747,0,0,0,0,0.449371918214468,0.457500602818626,1.38219787324151,0.347648640384553,0.511430914660661,1.0389402227978,0.324482526135515,0,0,0,5.6819301089348,11.0602376518298,11.9549094305406,15.6654052930654,15.8240058727501,11.9744238506337,14.476850392188,8.15205003669641,3.88055056108524,0,0,0,0,0,0,0,0.398068533636986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134206418760372,1.47202963994889,2.36680608472354,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.80275294993896,0.234423373184406,0,0,0,0,0,0,0,0,0,0,0,4.81981974632711,0,0,0,0,0,0.971122544619926,0.302323556964751,0.188605079755898,1.18120757152309,1.22974059177571,0,0,0,0.316036757935816,0,0,1.02131881726136,3.06103859853227,1.16422815404479,1.92903331528433,1.59606210278046,1.07021290561242,0.329098041204242,0,0,0,0,0,0,0,0,0,0,0.370850604021019,0,0.206386867963223,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134864346384821,0,0,0,0,0,0.448549638131936,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,0,1.14579102687879,0,1.37016503954128,0.755393897389701,0.675022500231806,0.900642406448441,0.453142408984205,0,2.49089634202024,0.798049746802062,1.87806966329548,1.21553358534147,1.04806581313991,0.735374033800057,0.222246727801615,0.206035057238894,0.320919209591815,0.505394423527595,0.50695859978048,0.943131706930381,0.749132059759059,0.384150914429216,0.34461281373368,0.476293691283074,0.115884325944855,0.578727661391115,0,0.883193520806384,1.02860775715625,0,0.715308569841963,0.581385666529314,0.282328141245992,0.507687647350059,0.182927972872773,1.57841826862706,0.407412341537585,0,0.237270036248348,0.591026894253381,1.22769312950907,0.154936841185966,0.578719832943424,1.49886346762768,0.467863216890817,0.429742108096597,0,0,0 | |||
|short_description=p4@Pax6 | |||
}} |
Revision as of 08:14, 6 August 2015
Short description: | p4@Pax6 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Pax6_5end |
Coexpression cluster: | MCL_coexpression_mm9:2320 |
Association with transcript: | 0bp_to_ENSMUST00000111085_5end |
EntrezGene: | 18508 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.41e-18 | 23 |
neuroblast (sensu Vertebrata) | 3.41e-18 | 23 |
neuron of cerebral cortex | 1.72e-11 | 6 |
neuron | 2.55e-11 | 33 |
neuronal stem cell | 2.55e-11 | 33 |
neuroblast | 2.55e-11 | 33 |
electrically signaling cell | 2.55e-11 | 33 |
neural cell | 4.72e-10 | 43 |
ectodermal cell | 1.03e-09 | 44 |
neurectodermal cell | 1.03e-09 | 44 |
electrically responsive cell | 6.40e-09 | 39 |
electrically active cell | 6.40e-09 | 39 |