FFCP PHASE1:Hg19::chr6:4021554..4021656,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8899 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17346 | |||
|TSSclassifier=strong | |||
|UniProt=Q13523 | |||
|association_with_transcript=0bp_to_ENST00000337659,NM_003913,uc003mvv.2_5end | |||
|coexpression_cluster_id=C3037 | |||
|description=CAGE_peak_1_at_PRPF4B_5end | |||
|id=chr6:4021554..4021656,+ | |||
|ontology_enrichment_celltype=CL:0000763!3.91e-14!112;CL:0000049!3.91e-14!112;CL:0000860!1.21e-11!45;CL:0002057!1.76e-11!42;CL:0000557!1.06e-10!71;CL:0000839!2.06e-10!70;CL:0002009!1.15e-09!65;CL:0002194!1.49e-09!63;CL:0000576!1.49e-09!63;CL:0000040!1.49e-09!63;CL:0000559!1.49e-09!63;CL:0000037!3.82e-09!172;CL:0000566!3.82e-09!172;CL:0002032!7.86e-09!165;CL:0000837!7.86e-09!165;CL:0000766!1.85e-08!76;CL:0000988!1.11e-07!182 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.72e-12;33!CL:0002057;2.72e-12;33!CL:0000473;8.46e-09;39!CL:0000234;8.46e-09;39!CL:0000576;1.04e-07;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000763,9.62e-14,108;CL:0000049,9.62e-14,108;CL:0000860,1.76e-11,42;CL:0002057,1.76e-11,42;CL:0000557,2.33e-10,67;CL:0000839,4.55e-10,66;CL:0000473,4.68e-10,48;CL:0000234,4.68e-10,48;CL:0002009,2.52e-09,61;CL:0002194,3.23e-09,59;CL:0000576,3.23e-09,59;CL:0000040,3.23e-09,59;CL:0000559,3.23e-09,59;CL:0000037,8.97e-09,168;CL:0002032,1.83e-08,161;CL:0000837,1.83e-08,161;CL:0000766,4.21e-08,72;CL:0000988,1.23e-07,177 | |||
|ontology_enrichment_development_v019=CL:0002057;1.22e-08;42 | |||
|ontology_enrichment_disease=DOID:162!4.94e-17!235;DOID:14566!3.34e-16!239;DOID:0050686!3.40e-09!137;DOID:0050687!4.05e-09!143;DOID:1240!4.98e-08!39;DOID:2531!1.18e-07!51;DOID:0060083!1.18e-07!51;DOID:8692!1.75e-07!31 | |||
|ontology_enrichment_disease_v019=DOID:8692;2.29e-07;31!DOID:1240;9.31e-07;39 | |||
|ontology_enrichment_disease_v019_2=DOID:162,4.94e-17,235;DOID:14566,3.34e-16,239;DOID:0050686,3.40e-09,137;DOID:0050687,4.05e-09,143;DOID:1240,4.98e-08,39;DOID:2531,1.18e-07,51;DOID:0060083,1.18e-07,51;DOID:8692,1.75e-07,31 | |||
|ontology_enrichment_uberon=UBERON:0000073!1.75e-09!94;UBERON:0001016!1.75e-09!94;UBERON:0001474!2.40e-09!86;UBERON:0001017!3.67e-09!82;UBERON:0001049!2.01e-08!57;UBERON:0005068!2.01e-08!57;UBERON:0006241!2.01e-08!57;UBERON:0007135!2.01e-08!57;UBERON:0002371!2.37e-08!80;UBERON:0007023!3.18e-08!115;UBERON:0005743!9.46e-08!86;UBERON:0003080!1.13e-07!42;UBERON:0004765!1.49e-07!101;UBERON:0001434!1.49e-07!101;UBERON:0002780!1.61e-07!41;UBERON:0001890!1.61e-07!41;UBERON:0006240!1.61e-07!41;UBERON:0002390!2.43e-07!102;UBERON:0003061!2.43e-07!102;UBERON:0000955!4.84e-07!69;UBERON:0006238!4.84e-07!69 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,7.58e-11,89;UBERON:0001017,5.25e-09,81;UBERON:0001474,5.55e-09,82;UBERON:0001049,2.88e-08,56;UBERON:0005068,2.88e-08,56;UBERON:0006241,2.88e-08,56;UBERON:0007135,2.88e-08,56;UBERON:0002371,5.43e-08,76;UBERON:0007023,6.52e-08,114;UBERON:0002780,1.61e-07,41;UBERON:0001890,1.61e-07,41;UBERON:0003080,1.61e-07,41;UBERON:0006240,1.61e-07,41;UBERON:0000073,2.21e-07,53;UBERON:0002616,2.21e-07,53;UBERON:0002390,5.48e-07,98;UBERON:0003061,5.48e-07,98;UBERON:0000955,6.80e-07,68;UBERON:0006238,6.80e-07,68;UBERON:0004765,6.88e-07,90 | |||
|phase1_expression=33.4288217857824,23.9792586757901,41.1586859960236,29.0212565224078,32.1811987987647,27.0424942471114,10.1319951267324,12.6343974685366,11.2309820125931,6.38908234903923,6.28021051175185,12.8880409556802,10.0231451726812,28.5900275337708,20.5466372951308,41.6841590800101,26.518559233055,29.9427137058823,25.8604383358969,13.6664374465235,11.2200380184339,4.70182082217132,52.0949496578523,43.1154438979585,34.398683248976,57.3864677167114,69.7855010324539,73.122315840408,9.8341069212226,40.6859161983045,36.5366051025939,18.3884244895785,5.72291245678675,8.13458822366933,72.8966357460638,76.913554775695,38.1680571135301,49.859586767869,45.7241340231923,37.5428806338424,59.3376006735799,53.4424548931316,77.272670290256,95.526642878174,100.892876964912,111.10350002402,78.09615640031,95.3909500210636,92.602204897636,58.4015556413965,65.0648194583916,67.6339177481354,69.6386275087969,99.4046412719092,70.4217730290577,82.6383870592035,116.5309260747,128.541833102588,68.8688757834531,98.5252113123607,73.5237694668897,77.1852042436916,88.5618639840045,71.1795333389599,62.6851955437741,98.7250290962583,94.0461595983318,68.8421342803477,58.9275697814828,94.2599586020206,65.3831462844038,85.440411549115,100.31857681876,53.4475874369213,58.8913910903171,40.4641185831166,69.7560799419735,68.6308400285684,132.116432265,28.5012743741249,46.5465024645871,47.4926799788048,31.6793240030381,28.3992077856308,24.016749854316,14.9355577898278,26.0257391573408,25.8638597979517,26.4417949113945,26.7135051269902,28.4606484554724,26.4256735216922,34.4045905312706,22.4691258584344,42.5986507865967,46.0922148356385,47.4070545974338,22.7946242394516,32.0738338439234,39.4560129122,21.510869597817,32.1944507899619,23.3792074089494,62.278445398812,25.336108042836,27.470202928369,51.994341842883,58.4096417949079,52.6740357617507,60.8420247033602,50.8484032725961,60.2790418328909,44.6342555117802,42.8065324943541,37.6327885697916,57.2212180622709,28.3583165265422,28.5210779750583,53.1341353240956,43.0063309337531,28.6476719696824,24.7117531556577,54.0564677489204,62.0735064098929,49.9722906209383,51.8542181976397,29.5606078891577,30.8458317133841,29.4184215361858,30.7027736231534,75.5801285573281,16.7675214925909,16.7499956015025,50.6014813338393,20.5548543360715,20.1336661355545,30.2208659879418,18.4921250715002,46.7001996790495,34.58978600416,36.1000969198748,17.1582588902004,2.18577172975525,7.78647329847302,32.779286759123,50.3234940794882,36.8293550637257,66.3003935568851,54.9115114348923,59.0617427114008,16.6960422188032,9.46258054616737,13.8856200643038,15.2633144319483,14.6824802673467,29.1625124456471,16.7195973229448,40.054597671246,45.5380816238989,59.2455484593466,15.3075140501476,12.9246257972147,12.2031028774085,43.3842434808125,12.9622711661082,57.1518261018111,61.5210480995705,57.4318550464943,10.7321646226118,3.79706263827252,16.4881569537367,10.5424333948851,7.75560528296651,5.66922267785295,46.2183915076646,34.1902381494365,100.895795779673,66.5460960137248,31.2108176334554,16.8203280042692,10.6748995729705,16.2800581955326,58.8188856905558,33.273536001213,42.9904805188396,15.5898150474279,30.5373239974399,7.26396438684769,23.0998456854437,11.9799082524334,24.9579296521508,42.8635920049742,46.6194079780219,48.4555283122757,48.7928469299195,37.9558040493363,43.9134569997003,36.8280885757437,30.1665653719839,4.55080680969013,2.15585442544872,41.9156923745625,44.5421930744192,68.4348365245932,39.9469635001563,19.6152189311373,27.4935647799072,21.438682617244,97.408572179052,37.5861004320679,36.4522869994446,57.3173993521208,62.3467801892555,69.0476647322286,33.5010341396862,113.924024262855,44.626148363829,80.7788077581166,43.9078016523768,60.132333136598,64.6117458380238,41.7113686662431,24.9254070696417,28.4093454150046,33.2750267120818,42.1602755221836,47.4477716844126,51.4215501087363,40.2031042328534,34.1044871000569,42.6422237979812,49.271943475237,7.8224766164908,19.2972281457866,9.66944449467364,25.5402360417588,18.7688665234092,45.7847316154196,35.7399542965576,28.9213235860178,46.4337625203379,38.3467821602635,34.404239771109,35.9999592787639,43.7573867229522,38.474715694639,11.8104872739944,9.81692416624121,4.5273141246454,8.82052268313252,25.3510069643662,22.6050259835854,49.0355622545565,58.2731291227339,42.6769881744604,36.0292401626904,25.1328153585753,1.1240175325762,25.7354169373775,28.3320642185101,9.44844085399942,5.19967392639789,18.7630744632855,42.198667410928,35.3400169649823,14.5810112238685,12.9635943521451,29.1088852918935,11.8530659693891,8.58486162094873,50.9669202600912,50.7789255352146,28.0912896725696,9.3733833986777,41.3236035369194,41.6818785892616,36.6294357854649,29.9352956669381,4.60059214998253,388.218631462003,93.9476790921122,69.6622468216994,68.6010978264736,61.2275802117943,54.100205936928,11.4596527667483,2.34434894420094,6.84289784090821,40.6168596178128,42.0480280981484,45.4464027882619,20.4078573508557,17.4384027533312,42.8295589194348,43.5645682103711,0,21.9778715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| |||
|short_description=p1@PRPF4B | |||
}} |
Revision as of 09:45, 22 January 2014
Short description: | p1@PRPF4B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PRPF4B_5end |
Coexpression cluster: | C3037_Mast_acute_osteosarcoma_hepatoblastoma_lung_Myoblast_salivary |
Association with transcript: | 0bp_to_ENST00000337659, NM_003913, uc003mvv.2_5end |
EntrezGene: | PRPF4B |
HGNC: | 17346 |
UniProt: | Q13523 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid cell | 9.62e-14 | 108 |
common myeloid progenitor | 9.62e-14 | 108 |
classical monocyte | 1.76e-11 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.76e-11 | 42 |
granulocyte monocyte progenitor cell | 2.33e-10 | 67 |
myeloid lineage restricted progenitor cell | 4.55e-10 | 66 |
defensive cell | 4.68e-10 | 48 |
phagocyte | 4.68e-10 | 48 |
macrophage dendritic cell progenitor | 2.52e-09 | 61 |
monopoietic cell | 3.23e-09 | 59 |
monocyte | 3.23e-09 | 59 |
monoblast | 3.23e-09 | 59 |
promonocyte | 3.23e-09 | 59 |
hematopoietic stem cell | 8.97e-09 | 168 |
hematopoietic oligopotent progenitor cell | 1.83e-08 | 161 |
hematopoietic multipotent progenitor cell | 1.83e-08 | 161 |
myeloid leukocyte | 4.21e-08 | 72 |
hematopoietic cell | 1.23e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
nervous system | 7.58e-11 | 89 |
central nervous system | 5.25e-09 | 81 |
bone element | 5.55e-09 | 82 |
neural tube | 2.88e-08 | 56 |
neural rod | 2.88e-08 | 56 |
future spinal cord | 2.88e-08 | 56 |
neural keel | 2.88e-08 | 56 |
bone marrow | 5.43e-08 | 76 |
adult organism | 6.52e-08 | 114 |
regional part of forebrain | 1.61e-07 | 41 |
forebrain | 1.61e-07 | 41 |
anterior neural tube | 1.61e-07 | 41 |
future forebrain | 1.61e-07 | 41 |
regional part of nervous system | 2.21e-07 | 53 |
regional part of brain | 2.21e-07 | 53 |
hematopoietic system | 5.48e-07 | 98 |
blood island | 5.48e-07 | 98 |
brain | 6.80e-07 | 68 |
future brain | 6.80e-07 | 68 |
skeletal element | 6.88e-07 | 90 |
Ontology term | p-value | n |
---|---|---|
cancer | 4.94e-17 | 235 |
disease of cellular proliferation | 3.34e-16 | 239 |
organ system cancer | 3.40e-09 | 137 |
cell type cancer | 4.05e-09 | 143 |
leukemia | 4.98e-08 | 39 |
hematologic cancer | 1.18e-07 | 51 |
immune system cancer | 1.18e-07 | 51 |
myeloid leukemia | 1.75e-07 | 31 |