FFCP PHASE1:Hg19::chr5:98104978..98105010,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=285704 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26896 | |||
|TSSclassifier=strong | |||
|UniProt=Q6NW40 | |||
|association_with_transcript=0bp_to_ENST00000308234,ENST00000434027,ENST00000505265,NM_001012761,uc003knb.2,uc003knc.2_5end | |||
|coexpression_cluster_id=C952 | |||
|description=CAGE_peak_5_at_RGMB_5end | |||
|id=chr5:98104978..98105010,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.82e-26!180;CL:0000057!4.03e-16!75;CL:0002620!9.17e-12!23;CL:0002321!9.23e-12!248;CL:0000359!1.14e-11!32;CL:0000220!1.16e-11!246;CL:0000222!3.97e-11!119;CL:0000680!5.31e-11!57;CL:0000056!5.31e-11!57;CL:0000355!5.31e-11!57;CL:0000393!4.46e-10!60;CL:0000211!4.46e-10!60;CL:0000187!5.51e-10!54;CL:0000183!2.01e-09!59;CL:0000192!2.75e-09!42;CL:0000514!2.75e-09!42;CL:0000221!9.79e-07!71 | |||
|ontology_enrichment_celltype_v019=CL:0002620;9.67e-13;23!CL:0000359;4.97e-12;32!CL:0000192;2.72e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.60e-16,76;CL:0002620,2.81e-13,23;CL:0000359,1.05e-12,32;CL:0000680,1.82e-11,58;CL:0000056,1.82e-11,58;CL:0000355,1.82e-11,58;CL:0000222,5.43e-11,121;CL:0000187,2.47e-10,55;CL:0000393,6.44e-10,61;CL:0000211,6.44e-10,61;CL:0000192,5.46e-09,43;CL:0000514,5.46e-09,43;CL:0002321,2.83e-08,250 | |||
|ontology_enrichment_development_v019=CL:0000514;2.72e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;3.25e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,4.04e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000475!2.65e-17!365;UBERON:0000914!3.08e-17!83;UBERON:0002329!3.08e-17!83;UBERON:0003077!3.08e-17!83;UBERON:0003059!3.08e-17!83;UBERON:0007282!3.08e-17!83;UBERON:0009618!3.08e-17!83;UBERON:0007285!3.08e-17!83;UBERON:0001981!3.40e-15!60;UBERON:0007500!3.40e-15!60;UBERON:0004537!3.40e-15!60;UBERON:0006965!3.40e-15!60;UBERON:0001637!6.71e-15!42;UBERON:0003509!6.71e-15!42;UBERON:0004572!6.71e-15!42;UBERON:0000055!1.25e-14!69;UBERON:0004290!2.38e-14!70;UBERON:0000119!3.00e-14!312;UBERON:0000483!4.07e-14!309;UBERON:0000486!1.45e-13!82;UBERON:0002049!2.10e-13!79;UBERON:0007798!2.10e-13!79;UBERON:0002199!9.60e-13!45;UBERON:0002416!9.60e-13!45;UBERON:0002097!1.40e-12!40;UBERON:0004573!2.77e-12!33;UBERON:0004571!2.77e-12!33;UBERON:0004872!6.26e-12!84;UBERON:0003102!1.01e-11!95;UBERON:0000481!1.48e-11!347;UBERON:0000468!1.17e-10!659;UBERON:0002385!1.40e-10!63;UBERON:0001015!1.40e-10!63;UBERON:0000383!1.40e-10!63;UBERON:0001134!1.49e-10!61;UBERON:0002036!1.49e-10!61;UBERON:0003082!1.49e-10!61;UBERON:0000467!3.37e-10!625;UBERON:0000480!3.94e-10!626;UBERON:0004111!5.66e-09!241;UBERON:0000025!1.33e-08!194;UBERON:0005256!1.92e-08!143;UBERON:0004121!3.78e-08!169;UBERON:0000477!4.44e-08!286;UBERON:0000924!1.94e-07!173;UBERON:0006601!1.94e-07!173;UBERON:0004535!2.14e-07!110;UBERON:0000490!2.98e-07!138;UBERON:0000947!3.57e-07!21;UBERON:0010191!3.57e-07!21;UBERON:0000073!3.83e-07!94;UBERON:0001016!3.83e-07!94;UBERON:0002100!4.33e-07!216;UBERON:0001009!7.01e-07!113 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;3.16e-13;33!UBERON:0004571;3.16e-13;33!UBERON:0001637;9.80e-13;42!UBERON:0003509;9.80e-13;42!UBERON:0004572;9.80e-13;42!UBERON:0007500;3.73e-10;56!UBERON:0001981;3.73e-10;56!UBERON:0004537;3.73e-10;56!UBERON:0002097;1.02e-09;41!UBERON:0002199;3.03e-08;46!UBERON:0002416;3.03e-08;46!UBERON:0000947;3.37e-08;21!UBERON:0010191;3.37e-08;21!UBERON:0003102;4.12e-08;50!UBERON:0000055;6.35e-08;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,4.24e-17,42;UBERON:0003509,4.24e-17,42;UBERON:0004572,4.24e-17,42;UBERON:0007500,1.33e-15,59;UBERON:0001981,1.33e-15,59;UBERON:0004537,1.33e-15,59;UBERON:0006965,1.33e-15,59;UBERON:0007524,4.06e-15,73;UBERON:0000055,7.02e-15,68;UBERON:0003077,7.77e-15,72;UBERON:0007285,7.77e-15,72;UBERON:0002329,2.08e-14,71;UBERON:0003059,2.08e-14,71;UBERON:0007282,2.08e-14,71;UBERON:0004290,2.08e-14,71;UBERON:0009618,2.08e-14,71;UBERON:0004573,4.27e-14,33;UBERON:0004571,4.27e-14,33;UBERON:0002097,1.37e-13,41;UBERON:0002199,1.40e-13,46;UBERON:0002416,1.40e-13,46;UBERON:0000486,6.96e-13,83;UBERON:0002049,1.59e-12,78;UBERON:0007798,1.59e-12,78;UBERON:0007503,2.55e-12,78;UBERON:0004872,5.86e-12,83;UBERON:0003102,1.88e-10,99;UBERON:0000483,2.77e-10,306;UBERON:0001134,2.86e-10,62;UBERON:0002036,2.86e-10,62;UBERON:0003082,2.86e-10,62;UBERON:0000119,2.96e-10,309;UBERON:0002385,5.87e-10,64;UBERON:0001015,5.87e-10,64;UBERON:0000383,5.87e-10,64;UBERON:0000490,5.96e-10,148;UBERON:0000947,3.28e-08,21;UBERON:0010191,3.28e-08,21;UBERON:0000025,3.10e-07,192;UBERON:0004535,5.72e-07,109;UBERON:0010314,6.61e-07,132;UBERON:0004111,6.77e-07,240 | |||
|phase1_expression=0.181678379270557,0,0.422863212287913,0,0,0,0,3.79031924056099,0.783556884599516,2.21160542851358,0.697801167972428,0,0,1.11389717664042,1.98838425436749,2.01697543935533,1.80808358407193,2.92124036154949,2.43966399395253,0.861847406537515,0.612002073732759,1.56727360739044,0.572471974262113,1.09499540058307,0.753255837568817,0,0,0,0,0,0,0,2.409647350226,1.10926203050036,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318565414324097,0.651083453856419,0,0,0.127986611154418,0,0.710331756132051,0,0,0,0,0,0,0,2.89151321907653,5.0133791063589,2.02785126545153,0.795285947051099,0.486634870302636,0.189069634328136,0.221729397462564,0.702678285545008,0.982343066232845,2.91436230634034,0.741568885568859,0,0,0,0,0,0,4.57153536943422,3.4409383804245,4.85996702250632,4.52246353539208,2.51699661725944,1.37559020970034,3.9709043641994,2.58416759169329,1.77883131343355,3.01248551488203,1.20848795132744,2.28081631715554,0.732186172644509,2.57364156242108,2.43042584364528,1.16089646769304,1.79623498100936,1.0135033243499,6.13266549863533,6.6448596169769,3.84723662253855,0,0,0.872188104285069,2.98183171017191,2.40597972162702,5.69359477496841,6.02356903572509,2.12801029319014,1.12135520028461,2.1349799145941,3.45334567784024,0.311211035399766,2.15537075311501,0.490385709340376,0.756787138224657,0,6.32667865951251,2.80944069147288,5.70471821544449,5.08125513876124,6.92863541998213,3.72307772046703,3.93262258766296,2.65400422631361,1.84251475967652,3.09977343527296,5.94001428641027,5.68713937340681,3.64064544775211,5.74894513452991,3.19838616512726,3.75355559615892,3.04770527032601,3.5118209670467,4.59731693698529,7.66214100423644,1.02088964844019,12.0191055911538,5.76604949810132,4.87443372666992,12.3037349394605,4.63736381572975,5.92573242104947,3.7223371266318,11.1392379279236,1.85130309806277,7.32057945307932,2.48534726334208,4.36444353410792,13.4903645156313,5.33986120606493,3.89989362314122,1.54608682530637,0.545492241181669,2.58124135850103,1.58565817968474,0.927708378250397,0.929551542956147,1.65857688024593,1.7662459561294,1.82488679537915,9.38697193978896,5.78916844373597,6.90674606762403,2.78620756819187,0.721879481669586,0,0,0,0,0,0,0,0,0,0.738155454624648,5.60967095213783,0,0,0,0,0,0,0.245976877086227,0.343135620597051,0.878002283269004,0,2.21163739305588,1.01847289674383,1.95484983186195,2.07986957055916,0,2.78232971940184,1.05667824812239,0.721832238805369,0,0,0,0,0,0,0,1.87467667973554,0.839910640994298,1.13420077793909,0,0.290633938513962,0,0,0,0,0,0,1.39695367442772,3.81988425558278,2.34434894420094,1.71072446022705,0.205654985406647,0.901029173531752,1.42913216315289,1.45770409648969,1.30788020649984,0.7333828582095,2.58543431515556,0,5.917119267892,2.92531928243358,3.12022310734098,1.54324424557285,1.41849132023278,3.19706614819319,0.285955987316295,0.542621605391443,0,4.23457039581856,0,0,0.904318131178758,0,0.899756920638513,0,0,0,5.99062138728957,3.44585807502342,8.5582143024431,3.32997005335432,2.87666851570537,6.62525563987614,0,0.197030760201927,0,0,3.55732473911449,3.90419561572865,0.773288812777695,1.67516265334349,0.637938751653163,0,0,0,1.71768088406796,3.00102312635806,2.71265023699736,2.07970861530807,3.7470087647404,3.94256037584837,8.78560612445349,2.10662269809403,0,4.1389228517002,4.64957918974806,4.42486004500088,4.95236602468072,1.17480694477644,2.40200396667599,0,0.215714200818617,0,0,1.66435439510497,0,1.48864684691266,0.61384789315225,1.68396056659844,0.896974044789907,0.511707249066704,0.804269605718038,0,4.00945203886904,4.43904313282818,4.59912073677331,1.55776328755086,3.48631135379878,0,1.40354529212299,1.19705285616665,1.03333003348146,2.00300284807389,2.36023946926963,3.60959690325929,1.07821471946181,0,0,1.05551628892876,0,1.02056223165909,0.431831832204279,3.08454505380579,0.812839312631559,0,0.509752546090077,0,1.56712328305525,0,0,1.79515087581472,0.984043937099117,0.650756789328606,0.103041011647722,0,0.082509499920588,2.87132768998086,5.20048196829217,6.42735719376638,7.0569624353249,2.61882649094895,1.84204409671355,7.02966519671106,1.39646318328756,2.0302337147992,2.38634556765083,4.00644160410318,0.826424576804891,0.960950336825531,1.14851441245126,1.31505115112215,3.71876439437829,14.1665556073788,2.7881490806424,6.46870518369786,5.32306030317022,5.21959795245044,4.26245703939016,3.43499728180779,0.744316738719335,1.58189712359363,1.5250415513906,3.58256907835867,1.28381696410176,7.63687795022248,7.8494864019923,0.539617372749944,0,0.471249609382746,6.06547444719948,3.17020642346017,5.05510147486777,0.48763373908959,6.33655073041339,6.33900880540533,0.682499557039929,0.707027159768564,4.52032466480971,2.2054613741845,6.6343897524122,2.19225442626881,0,1.31178950409327,3.85529716229138,5.88664646389525,7.32408566583828,1.29070216983646,1.57198465620994,3.5667105148125,3.90237170477658,2.11107635297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| |||
|short_description=p5@RGMB | |||
}} |
Revision as of 06:39, 22 January 2014
Short description: | p5@RGMB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_RGMB_5end |
Coexpression cluster: | C952_basal_Fibroblast_tenocyte_Hair_Smooth_Preadipocyte_Myoblast |
Association with transcript: | 0bp_to_ENST00000308234, ENST00000434027, ENST00000505265, NM_001012761, uc003knb.2, uc003knc.2_5end |
EntrezGene: | RGMB |
HGNC: | 26896 |
UniProt: | Q6NW40 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.60e-16 | 76 |
skin fibroblast | 2.81e-13 | 23 |
vascular associated smooth muscle cell | 1.05e-12 | 32 |
muscle precursor cell | 1.82e-11 | 58 |
myoblast | 1.82e-11 | 58 |
multi-potent skeletal muscle stem cell | 1.82e-11 | 58 |
mesodermal cell | 5.43e-11 | 121 |
muscle cell | 2.47e-10 | 55 |
electrically responsive cell | 6.44e-10 | 61 |
electrically active cell | 6.44e-10 | 61 |
smooth muscle cell | 5.46e-09 | 43 |
smooth muscle myoblast | 5.46e-09 | 43 |
embryonic cell | 2.83e-08 | 250 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 4.04e-07 | 14 |