FFCP PHASE1:Hg19::chr5:54281739..54281753,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=11082 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3466 | |||
|TSSclassifier=weak | |||
|UniProt=Q9NQ30 | |||
|association_with_transcript=-248bp_to_ENST00000381405_5end | |||
|coexpression_cluster_id=C4506 | |||
|description=CAGE_peak_3_at_ESM1_5end | |||
|id=chr5:54281739..54281753,- | |||
|ontology_enrichment_celltype=CL:0000222!2.35e-35!119;CL:0002139!2.54e-21!24;CL:0000680!1.84e-20!57;CL:0000056!1.84e-20!57;CL:0000355!1.84e-20!57;CL:0000359!1.71e-19!32;CL:0000187!2.32e-18!54;CL:0000115!4.30e-18!35;CL:0000183!4.54e-18!59;CL:0000213!4.13e-17!57;CL:0000215!4.13e-17!57;CL:0000055!4.96e-17!180;CL:0000071!7.33e-16!18;CL:0002546!7.33e-16!18;CL:0000220!1.94e-15!246;CL:0000393!2.41e-15!60;CL:0000211!2.41e-15!60;CL:0000192!2.79e-15!42;CL:0000514!2.79e-15!42;CL:0002321!4.18e-15!248;CL:0002078!1.41e-13!44;CL:0002539!9.65e-10!10;CL:1000413!5.13e-08!9;CL:0002595!1.30e-07!5;CL:0000548!2.97e-07!679;CL:0000004!2.97e-07!679;CL:0000255!2.97e-07!679;CL:0000144!3.68e-07!625;CL:0002371!3.80e-07!591;CL:0000012!4.91e-07!682;CL:0005020!4.95e-07!6;CL:0002138!4.95e-07!6;CL:0005022!4.95e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000359;2.07e-29;32!CL:0000192;1.45e-18;43!CL:0002539;1.55e-16;10!CL:0002139;3.53e-16;24!CL:0000115;1.55e-13;36!CL:0002595;2.54e-12;5!CL:0000071;8.29e-12;18!CL:0000187;8.42e-12;55!CL:1000413;1.45e-10;9!CL:0002078;1.28e-08;45!CL:0000393;1.51e-08;61!CL:0000211;1.51e-08;61!CL:0000213;4.58e-08;58!CL:0000215;4.58e-08;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,3.21e-31,121;CL:0000359,7.93e-31,32;CL:0000680,6.02e-24,58;CL:0000056,6.02e-24,58;CL:0000355,6.02e-24,58;CL:0000192,1.61e-23,43;CL:0000514,1.61e-23,43;CL:0000187,4.44e-22,55;CL:0000393,3.93e-19,61;CL:0000211,3.93e-19,61;CL:0002539,2.45e-16,10;CL:0002139,2.97e-16,24;CL:0000115,4.73e-16,36;CL:0002321,2.53e-12,250;CL:0002595,3.25e-12,5;CL:0000071,7.12e-12,18;CL:0002546,7.12e-12,18;CL:0002078,7.61e-12,45;CL:1000413,1.73e-10,9;CL:0000213,1.85e-10,58;CL:0000215,1.85e-10,58 | |||
|ontology_enrichment_development_v019=CL:0000514;1.45e-18;43!CL:0000355;4.79e-12;58!CL:0002546;8.29e-12;18!CL:0000222;2.99e-07;121 | |||
|ontology_enrichment_disease=DOID:2394!1.31e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:0060072;2.01e-10;4!DOID:0060084;3.61e-08;3!DOID:127;3.61e-08;3!DOID:2394;9.17e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:0060072,2.09e-10,4;DOID:0060084,3.76e-08,3;DOID:127,3.76e-08,3;DOID:2394,7.15e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000055!1.86e-36!69;UBERON:0001637!3.21e-34!42;UBERON:0003509!3.21e-34!42;UBERON:0004572!3.21e-34!42;UBERON:0001981!1.76e-33!60;UBERON:0007500!1.76e-33!60;UBERON:0004537!1.76e-33!60;UBERON:0006965!1.76e-33!60;UBERON:0002049!2.14e-29!79;UBERON:0007798!2.14e-29!79;UBERON:0004573!4.86e-26!33;UBERON:0004571!4.86e-26!33;UBERON:0004872!8.99e-26!84;UBERON:0003914!3.41e-22!118;UBERON:0004535!2.09e-21!110;UBERON:0001009!2.51e-20!113;UBERON:0000490!3.08e-20!138;UBERON:0001134!2.88e-18!61;UBERON:0002036!2.88e-18!61;UBERON:0003082!2.88e-18!61;UBERON:0004290!2.16e-17!70;UBERON:0002385!2.79e-17!63;UBERON:0001015!2.79e-17!63;UBERON:0000383!2.79e-17!63;UBERON:0000486!5.34e-17!82;UBERON:0001986!7.33e-16!18;UBERON:0004638!7.33e-16!18;UBERON:0004852!7.33e-16!18;UBERON:0000947!3.08e-15!21;UBERON:0010191!3.08e-15!21;UBERON:0000914!2.87e-14!83;UBERON:0002329!2.87e-14!83;UBERON:0003077!2.87e-14!83;UBERON:0003059!2.87e-14!83;UBERON:0007282!2.87e-14!83;UBERON:0009618!2.87e-14!83;UBERON:0007285!2.87e-14!83;UBERON:0000487!6.39e-14!22;UBERON:0006914!7.96e-13!25;UBERON:0000119!2.80e-11!312;UBERON:0004111!1.97e-10!241;UBERON:0005256!2.82e-10!143;UBERON:0000483!3.12e-10!309;UBERON:0004237!9.65e-10!10;UBERON:0004695!9.65e-10!10;UBERON:0002111!9.65e-10!10;UBERON:0004178!9.65e-10!10;UBERON:0000025!1.32e-09!194;UBERON:0000477!4.83e-08!286;UBERON:0002100!4.90e-08!216;UBERON:0003915!5.13e-08!9;UBERON:0004700!5.13e-08!9;UBERON:0001917!5.13e-08!9;UBERON:0003834!1.30e-07!5;UBERON:0001533!1.30e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;5.42e-35;33!UBERON:0004571;5.42e-35;33!UBERON:0001637;2.74e-32;42!UBERON:0003509;2.74e-32;42!UBERON:0004572;2.74e-32;42!UBERON:0007500;6.67e-22;56!UBERON:0001981;6.67e-22;56!UBERON:0004537;6.67e-22;56!UBERON:0000947;1.95e-19;21!UBERON:0010191;1.95e-19;21!UBERON:0000055;3.38e-18;65!UBERON:0004237;1.55e-16;10!UBERON:0004695;1.55e-16;10!UBERON:0002111;1.55e-16;10!UBERON:0004178;1.55e-16;10!UBERON:0003914;6.69e-14;74!UBERON:0002049;6.62e-13;75!UBERON:0007798;6.62e-13;75!UBERON:0003834;2.54e-12;5!UBERON:0001533;2.54e-12;5!UBERON:0004638;8.29e-12;18!UBERON:0001986;8.29e-12;18!UBERON:0004852;8.29e-12;18!UBERON:0000487;2.71e-11;22!UBERON:0003915;1.45e-10;9!UBERON:0004700;1.45e-10;9!UBERON:0001917;1.45e-10;9!UBERON:0001135;2.22e-10;15!UBERON:0002385;8.93e-10;31!UBERON:0001015;8.93e-10;31!UBERON:0000383;8.93e-10;31!UBERON:0006914;1.32e-09;25!UBERON:0003513;1.22e-08;7!UBERON:0000025;1.62e-08;93!UBERON:0000490;4.99e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,1.65e-44,42;UBERON:0003509,1.65e-44,42;UBERON:0004572,1.65e-44,42;UBERON:0000055,3.31e-40,68;UBERON:0004573,6.80e-38,33;UBERON:0004571,6.80e-38,33;UBERON:0007500,7.08e-38,59;UBERON:0001981,7.08e-38,59;UBERON:0004537,7.08e-38,59;UBERON:0006965,7.08e-38,59;UBERON:0002049,1.59e-33,78;UBERON:0007798,1.59e-33,78;UBERON:0004872,5.75e-27,83;UBERON:0004535,2.85e-23,109;UBERON:0007503,9.69e-23,78;UBERON:0001009,2.48e-22,112;UBERON:0003914,4.27e-22,117;UBERON:0001134,7.48e-22,62;UBERON:0002036,7.48e-22,62;UBERON:0003082,7.48e-22,62;UBERON:0002385,6.61e-21,64;UBERON:0001015,6.61e-21,64;UBERON:0000383,6.61e-21,64;UBERON:0000490,1.39e-19,148;UBERON:0002329,1.76e-19,71;UBERON:0003059,1.76e-19,71;UBERON:0007282,1.76e-19,71;UBERON:0004290,1.76e-19,71;UBERON:0009618,1.76e-19,71;UBERON:0000947,3.74e-19,21;UBERON:0010191,3.74e-19,21;UBERON:0003077,4.31e-19,72;UBERON:0007285,4.31e-19,72;UBERON:0007524,1.03e-18,73;UBERON:0004237,2.45e-16,10;UBERON:0004695,2.45e-16,10;UBERON:0002111,2.45e-16,10;UBERON:0004178,2.45e-16,10;UBERON:0000486,1.92e-15,83;UBERON:0003834,3.25e-12,5;UBERON:0001533,3.25e-12,5;UBERON:0005256,3.96e-12,122;UBERON:0004638,7.12e-12,18;UBERON:0001986,7.12e-12,18;UBERON:0004852,7.12e-12,18;UBERON:0000487,2.37e-11,22;UBERON:0000926,5.08e-11,315;UBERON:0004120,5.08e-11,315;UBERON:0006603,5.08e-11,315;UBERON:0003915,1.73e-10,9;UBERON:0004700,1.73e-10,9;UBERON:0001917,1.73e-10,9;UBERON:0001135,2.97e-10,15;UBERON:0006914,1.18e-09,25;UBERON:0003081,3.56e-09,203;UBERON:0000025,5.29e-09,192;UBERON:0003513,1.45e-08,7;UBERON:0004111,7.19e-08,240;UBERON:0003104,7.99e-08,160;UBERON:0009142,7.99e-08,160;UBERON:0000119,9.61e-08,309;UBERON:0000483,1.81e-07,306 | |||
|phase1_expression=0,0,0.281908808191942,0,0,0.872338524100369,0,0,0,8.10921990454979,0.697801167972428,0,0,0,0,1.34465029290355,1.20538905604795,3.65155045193687,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.78886166630035,0,2.42998351125316,1.13061588384802,2.09749718104953,1.37559020970034,3.76190939766259,2.84258435086262,0.35576626268671,4.35136796594071,2.81980521976403,4.56163263431108,0.976248230192678,2.20597848207521,0.81014194788176,0.892997282840798,0.44905874525234,1.68917220724983,1.53316637465883,0.949265659568129,0.549605231791222,0,0,0,1.49091585508596,2.27934920996244,0.264818361626438,0.573673241497627,1.06400514659507,1.12135520028461,0,0,0,0,0,0,0,0,0,0.570471821544449,0,1.64408298101271,0,0.421352420106746,0,0,0,0,0,0,0,0,1.12606667884768,0,0,0,0.150238058906597,0.453728732640084,1.07633781413317,0.213557388818567,0,0.300091096084402,0.515262646192195,0,0,0.506328996723799,0,0,0,0,0,0.201504196455281,0,0.193260853163297,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.91534019993729,0,0,0,0,0,0,2.30986316417718,0.462985512576611,1.33177906564219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205654985406647,0,0,0.448524337381443,0.87192013766656,1.10007428731425,1.55126058909333,0,0.845302752556,0,0,0,1.41849132023278,0,0,0,0,4.56030658011229,0,0,0.602878754119172,0,0.099972991182057,0,0,0,0,0,2.85273810081437,1.73737568001095,0.205476322550383,1.07436577943937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0,0,1.87426263988341,0,0,0,0.664225598535437,0.553107505625109,1.30325421702124,0,0,0,0,0,0,0,0,0.248107807818777,0,0,0.128139149255701,0,0,0,5.39733928309294,2.13074070375753,1.88892458831761,0.519254429183621,3.83494248917865,0,0,0,0.114814448164607,0.910455840033585,0.131124414959424,0,0.539107359730903,0,0,0,3.4120015221269,1.53084334748864,1.0795795805107,1.54227252690289,0.270946437543853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386682873168488,0.770243085573222,0.307007349452259,3.1702411671442,0.107420244868274,0,1.36362603865761,0,0,0,0,0,1.39453664789186,6.2962469366128,4.1822236209636,5.5446044431696,2.12922412126809,4.34966496037536,1.66791797193528,2.28999818787186,0,0,0,0,0,2.22742273548156,2.35484592059769,0,0,0,2.83055474202642,0,2.94880919367287,0,30.2204727142793,2.11300293513511,0.136499911407986,0,3.39024349860728,9.37321084028411,6.6343897524122,5.69986150829892,0,0,0.202910376962704,1.8589409885985,2.53526042279017,0,0,0.35667105148125,18.8023363957417,0.211107635297664,0,0,0,0.192444225451024,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,2.11486539543521,0,0,0,0,0,0.20453736500431,0,2.17727711363265,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.341826167541004,0,0,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.450970258243478,0,0.664653872707185,3.64091151463049,0,0,0,0,0,0,0.0870592065804026,0,0,0,0,0,0,0,0.225980740780532,2.46675464364152,10.5318744202585,0,0,0,0,0,0,0,0,0,7.57940466949138,0,0,0.313808538937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.315222829196793,0.0524545881349981,0.422401346077626,0.179287339332845,0,0,0,0,3.25799761052228,9.50643640321395,15.3496059251422,1.19730191562487,0,0,0.339936274560377,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0.306345576763462,0,0,0,0,0,0,0,0.124192805882767,0,0,0,0.285465333544967,0.470531639396343,0,0,0.298509605773748,0,1.10961172300523,0,0,0,0.457680136793847,0.453692771289717,1.5543720058278,0.443565449968902,2.86734180894664,0,1.70789252563885,0.829412415681711,6.11435943483388,0.521745061811734,0,1.52322084867518,4.47557806525128,0.181848659202559,0.966695013382396,3.24823631914946,2.78667122089031,0,0,0,0,0,0,0,0.453411851024545,0,1.46842022703881,0.537266523244462,0,0,30.7439113945833,0.192914038270915,0.168942440653073,0,0,0.303859956177382,0,0,0,0,0,0,0,0,0,0,0,6.81192015931811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0,0,0,0,0,0,0,0.381382095467167,7.59395918666111,0,0,0,0,0,2.29280684514135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.78078504730173,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,23.1930721431908,27.1830761181713,0,0,0,0.955538938977433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.64672016095176,0,0,0,0,0,0,0,0,0,0,0,0,0,0.743990036333503,0,0.432626562123789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.06430734257865,0,0,0,0,0,0,0,0.0814032686109745,0.426909383510862,0,0,0,0,0,0,0,0 | |||
|short_description=p3@ESM1 | |||
}} |
Revision as of 05:25, 22 January 2014
Short description: | p3@ESM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ESM1_5end |
Coexpression cluster: | C4506_mesothelioma_schwannoma_Smooth_thyroid_leiomyoma_osteosarcoma_fibrous |
Association with transcript: | -248bp_to_ENST00000381405_5end |
EntrezGene: | ESM1 |
HGNC: | 3466 |
UniProt: | Q9NQ30 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 3.21e-31 | 121 |
vascular associated smooth muscle cell | 7.93e-31 | 32 |
muscle precursor cell | 6.02e-24 | 58 |
myoblast | 6.02e-24 | 58 |
multi-potent skeletal muscle stem cell | 6.02e-24 | 58 |
smooth muscle cell | 1.61e-23 | 43 |
smooth muscle myoblast | 1.61e-23 | 43 |
muscle cell | 4.44e-22 | 55 |
electrically responsive cell | 3.93e-19 | 61 |
electrically active cell | 3.93e-19 | 61 |
aortic smooth muscle cell | 2.45e-16 | 10 |
endothelial cell of vascular tree | 2.97e-16 | 24 |
endothelial cell | 4.73e-16 | 36 |
embryonic cell | 2.53e-12 | 250 |
smooth muscle cell of the subclavian artery | 3.25e-12 | 5 |
blood vessel endothelial cell | 7.12e-12 | 18 |
embryonic blood vessel endothelial progenitor cell | 7.12e-12 | 18 |
meso-epithelial cell | 7.61e-12 | 45 |
endothelial cell of artery | 1.73e-10 | 9 |
lining cell | 1.85e-10 | 58 |
barrier cell | 1.85e-10 | 58 |
Ontology term | p-value | n |
---|---|---|
benign neoplasm | 2.09e-10 | 4 |
cell type benign neoplasm | 3.76e-08 | 3 |
leiomyoma | 3.76e-08 | 3 |
ovarian cancer | 7.15e-07 | 14 |