FFCP PHASE1:Mm9::chr16:89818583..89818601,-: Difference between revisions
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{{FFCP|EntrezGene=21844|HGNC=|MCL_coexpression_id=189|UniProt=E9Q1R7,Q3UHH6,Q3UVX2,Q6P1D6|association_with_transcript=0bp_to_ENSMUST00000133684,ENSMUST00000164263,NM_001145887,uc007zvs.2_5end|description=CAGE_peak_11_at_Tiam1_5end|id=chr16:89818583..89818601,-|ontology_enrichment_celltype=CL:0000117!9.91e-11!23;CL:0000337!9.91e-11!23;CL:0000540!2.61e-08!33;CL:0000047!2.61e-08!33;CL:0000031!2.61e-08!33;CL:0000404!2.61e-08!33|ontology_enrichment_celltype_v019_2=CL:0002610,1.43e-10,3;CL:0000117,7.89e-09,23;CL:0000337,7.89e-09,23;CL:0000540,4.38e-07,33;CL:0000047,4.38e-07,33;CL:0000031,4.38e-07,33;CL:0000404,4.38e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!5.12e-19!52;UBERON:0005068!5.12e-19!52;UBERON:0006241!5.12e-19!52;UBERON:0007135!5.12e-19!52;UBERON:0000955!2.04e-18!50;UBERON:0006238!2.04e-18!50;UBERON:0002616!1.13e-17!49;UBERON:0000033!1.76e-17!63;UBERON:0001017!6.24e-17!73;UBERON:0005743!6.24e-17!73;UBERON:0000073!7.11e-17!75;UBERON:0001016!7.11e-17!75;UBERON:0002346!2.11e-15!71;UBERON:0003075!2.11e-15!71;UBERON:0007284!2.11e-15!71;UBERON:0004121!1.04e-14!102;UBERON:0000924!1.04e-14!102;UBERON:0006601!1.04e-14!102;UBERON:0003080!2.10e-14!40;UBERON:0002020!5.71e-14!34;UBERON:0002780!1.06e-13!39;UBERON:0001890!1.06e-13!39;UBERON:0006240!1.06e-13!39;UBERON:0000025!1.13e-13!114;UBERON:0004111!3.16e-13!122;UBERON:0003056!1.14e-12!49;UBERON:0002791!7.24e-11!29;UBERON:0003528!7.24e-11!29;UBERON:0001893!7.24e-11!29;UBERON:0007811!5.73e-10!86;UBERON:0000153!5.06e-09!94;UBERON:0000477!2.62e-07!154;UBERON:0000956!4.77e-07!21;UBERON:0001869!4.77e-07!21;UBERON:0000203!4.77e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0000073,8.85e-18,54;UBERON:0001017,9.74e-17,73;UBERON:0001016,3.65e-16,75;UBERON:0004121,3.81e-13,95;UBERON:0000924,3.81e-13,95;UBERON:0006601,3.81e-13,95;UBERON:0001049,1.50e-12,52;UBERON:0005068,1.50e-12,52;UBERON:0006241,1.50e-12,52;UBERON:0007135,1.50e-12,52;UBERON:0002346,6.62e-11,64;UBERON:0003075,6.62e-11,64;UBERON:0007284,6.62e-11,64;UBERON:0004684,1.43e-10,3;UBERON:0002275,1.43e-10,3;UBERON:0010371,1.95e-10,73;UBERON:0000955,2.19e-09,47;UBERON:0006238,2.19e-09,47;UBERON:0001948,3.94e-09,5;UBERON:0002315,3.94e-09,5;UBERON:0004111,5.96e-09,122;UBERON:0000025,8.34e-09,114;UBERON:0011216,2.58e-08,194;UBERON:0002020,3.22e-08,34;UBERON:0002616,3.61e-08,46;UBERON:0003076,1.26e-07,12;UBERON:0003057,1.26e-07,12;UBERON:0002240,1.27e-07,6;UBERON:0005174,1.27e-07,6;UBERON:0001137,1.27e-07,6;UBERON:0010314,1.84e-07,92;UBERON:0003080,5.27e-07,40|phase1_expression=0.80074423552397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.595303031057488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26766280701236,0,0,0,0,0,0,0,0.414758449233911,0.270011876663381,0.630974884054146,1.99955689082663,1.10434270475807,0.367472397644862,0.287536413054709,0.919218786610021,3.30347642998166,11.6195477657521,6.75868746327471,0.659431438650969,0.731901148819277,0.52091337055676,0.837548997004143,1.12552522006336,0.61119299110724,1.17851434189467,1.42371680799103,0.559198337475902,0.075726193333184,0.0755715601067855,1.44932244350839,0.860423876981386,0,0,0,0,0.280888840263504,0,0,0,2.67602497575693,0,0,0,0,0,0,0.11418387971906,0,0,0,0.304465478312141,0,0,0,0.376999773989026,0.247194967734374,0,0,0,0,0,0,0.878342391034642,1.04723353406728,0,0,0,0,1.79748767285787,1.37250180845588,0.251308704225729,1.73824320192276,1.27857728665165,9.97382613885888,6.16516799657479,0,0,0,0,0.520481771850815,0,0.180062129805349,0.150704817835715,0.408218994907967,0,0.187403449119458,0,0.431135985865684,0.189106080167819,0,0,0.278047249225598,0,0,0.398068533636986,0,0,0,0.207125772535502,0.234526059981096,0.180062061461015,0,0.787056926989615,0.154267112887378,0.697601834251224,0.268273401399619,0.233530684734339,0.16455984991348,0,0,0,0,0,0.420579897128254,0.102904612379284,0,0,0,0.232236671860439,0.128867461322093,0,0,0.190225626112559,0,0.329397909448022,0,0,0,0,0,0.199141273254367,0.189667900953082,0.114248512609729,0,0.407302655690628,0.193952487167626,0.140271639780637,0.316182685621286,0.147610147979602,0,0.370191491765402,0,0,0.196558995113203,0,0,0.241177159752417,0,0,0,0,0,0,0.312037673114561,0.252578877947112,0.179397413521912,0,0.369506380333209,0,0.162964976442026,0.339490171550376,0.469380496577004,0.502518772325447,2.38043640886014,0.585400943573396,1.10344600874334,0.44292937929755,0.797273843287435,1.96635977658886,1.55416483679306,2.02508682014116,0,0,0,0,0.642202359951168,1.05490517932983,0,0,0,0.390438744296638,1.72338718186239,0,0,0.283076530788832,0,0,0,1.92792789853084,0,0,0,0.164970122972535,0,0,0,0,0,0,0,0,0,0,0,0,0,0.900305470156551,0.646793418913773,0.428674070063185,0,0.356737635204141,0.493647061806363,1.522324745573,0,0.21183207086382,0,0,0.322928853391811,0.180938774784468,0.119372344003136,0.820704498725306,0,0.556275906031529,0,0,0,0.188368457004691,0,0,0,0,0,0,0,0,0.108005340821801,0.418176592028937,0,0.134864346384821,0.247960367176008,0,0.129614973291793,0,0,0.598066184175915,0.165458490457098,0.194451188344048,0.387479470433193,0.168956125490778,0.117357238645754,0,0.209718688851422,0,0,0,0,0.205421914329655,0.649604114888975,0,0.198681354781265,0.120195449519969,0,0,0,0.100826185136841,0,0,0,0.226730383615211,0,0,0,0,0,0,0,0,0.564751842617067,0,0.572895513439397,0.68741272937475,4.11049511862385,2.2661816921691,1.35004500046361,0.45032120322422,0.906284817968409,2.5888015587591,0.518936737920883,0.399024873401031,0.341467211508268,0,0,0,0.44449345560323,0,0,0.758091635291392,0.25347929989024,0.188626341386076,0.187283014939765,0.576226371643824,0.287177344778066,0,0.115884325944855,0.77163688185482,0,0.588795680537589,0,0.177475806159338,0.238436189947321,0.436039249896986,0.188218760830661,0.169229215783353,0.548783918618318,0,0.135804113845862,0,0,0,0,0.154936841185966,0.385813221962283,0.499621155875892,0.233931608445408,0.214871054048298,0.382576664137687,0.441182838239031,0.695603506861264|short_description=p11@Tiam1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:21844 | |||
|HGNC= | |||
|MCL_coexpression_id=189 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:E9Q1R7,uniprot:Q3UHH6,uniprot:Q3UVX2,uniprot:Q6P1D6 | |||
|association_with_transcript=0bp_to_ENSMUST00000133684,ENSMUST00000164263,NM_001145887,uc007zvs.2_5end | |||
|cluster_id=chr16:89818583..89818601,- | |||
|description=CAGE_peak_11_at_Tiam1_5end | |||
|id=chr16:89818583..89818601,- | |||
|ontology_enrichment_celltype=CL:0000117!9.91e-11!23;CL:0000337!9.91e-11!23;CL:0000540!2.61e-08!33;CL:0000047!2.61e-08!33;CL:0000031!2.61e-08!33;CL:0000404!2.61e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0002610,1.43e-10,3;CL:0000117,7.89e-09,23;CL:0000337,7.89e-09,23;CL:0000540,4.38e-07,33;CL:0000047,4.38e-07,33;CL:0000031,4.38e-07,33;CL:0000404,4.38e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!5.12e-19!52;UBERON:0005068!5.12e-19!52;UBERON:0006241!5.12e-19!52;UBERON:0007135!5.12e-19!52;UBERON:0000955!2.04e-18!50;UBERON:0006238!2.04e-18!50;UBERON:0002616!1.13e-17!49;UBERON:0000033!1.76e-17!63;UBERON:0001017!6.24e-17!73;UBERON:0005743!6.24e-17!73;UBERON:0000073!7.11e-17!75;UBERON:0001016!7.11e-17!75;UBERON:0002346!2.11e-15!71;UBERON:0003075!2.11e-15!71;UBERON:0007284!2.11e-15!71;UBERON:0004121!1.04e-14!102;UBERON:0000924!1.04e-14!102;UBERON:0006601!1.04e-14!102;UBERON:0003080!2.10e-14!40;UBERON:0002020!5.71e-14!34;UBERON:0002780!1.06e-13!39;UBERON:0001890!1.06e-13!39;UBERON:0006240!1.06e-13!39;UBERON:0000025!1.13e-13!114;UBERON:0004111!3.16e-13!122;UBERON:0003056!1.14e-12!49;UBERON:0002791!7.24e-11!29;UBERON:0003528!7.24e-11!29;UBERON:0001893!7.24e-11!29;UBERON:0007811!5.73e-10!86;UBERON:0000153!5.06e-09!94;UBERON:0000477!2.62e-07!154;UBERON:0000956!4.77e-07!21;UBERON:0001869!4.77e-07!21;UBERON:0000203!4.77e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,8.85e-18,54;UBERON:0001017,9.74e-17,73;UBERON:0001016,3.65e-16,75;UBERON:0004121,3.81e-13,95;UBERON:0000924,3.81e-13,95;UBERON:0006601,3.81e-13,95;UBERON:0001049,1.50e-12,52;UBERON:0005068,1.50e-12,52;UBERON:0006241,1.50e-12,52;UBERON:0007135,1.50e-12,52;UBERON:0002346,6.62e-11,64;UBERON:0003075,6.62e-11,64;UBERON:0007284,6.62e-11,64;UBERON:0004684,1.43e-10,3;UBERON:0002275,1.43e-10,3;UBERON:0010371,1.95e-10,73;UBERON:0000955,2.19e-09,47;UBERON:0006238,2.19e-09,47;UBERON:0001948,3.94e-09,5;UBERON:0002315,3.94e-09,5;UBERON:0004111,5.96e-09,122;UBERON:0000025,8.34e-09,114;UBERON:0011216,2.58e-08,194;UBERON:0002020,3.22e-08,34;UBERON:0002616,3.61e-08,46;UBERON:0003076,1.26e-07,12;UBERON:0003057,1.26e-07,12;UBERON:0002240,1.27e-07,6;UBERON:0005174,1.27e-07,6;UBERON:0001137,1.27e-07,6;UBERON:0010314,1.84e-07,92;UBERON:0003080,5.27e-07,40 | |||
|phase1_expression=0.80074423552397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.595303031057488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26766280701236,0,0,0,0,0,0,0,0.414758449233911,0.270011876663381,0.630974884054146,1.99955689082663,1.10434270475807,0.367472397644862,0.287536413054709,0.919218786610021,3.30347642998166,11.6195477657521,6.75868746327471,0.659431438650969,0.731901148819277,0.52091337055676,0.837548997004143,1.12552522006336,0.61119299110724,1.17851434189467,1.42371680799103,0.559198337475902,0.075726193333184,0.0755715601067855,1.44932244350839,0.860423876981386,0,0,0,0,0.280888840263504,0,0,0,2.67602497575693,0,0,0,0,0,0,0.11418387971906,0,0,0,0.304465478312141,0,0,0,0.376999773989026,0.247194967734374,0,0,0,0,0,0,0.878342391034642,1.04723353406728,0,0,0,0,1.79748767285787,1.37250180845588,0.251308704225729,1.73824320192276,1.27857728665165,9.97382613885888,6.16516799657479,0,0,0,0,0.520481771850815,0,0.180062129805349,0.150704817835715,0.408218994907967,0,0.187403449119458,0,0.431135985865684,0.189106080167819,0,0,0.278047249225598,0,0,0.398068533636986,0,0,0,0.207125772535502,0.234526059981096,0.180062061461015,0,0.787056926989615,0.154267112887378,0.697601834251224,0.268273401399619,0.233530684734339,0.16455984991348,0,0,0,0,0,0.420579897128254,0.102904612379284,0,0,0,0.232236671860439,0.128867461322093,0,0,0.190225626112559,0,0.329397909448022,0,0,0,0,0,0.199141273254367,0.189667900953082,0.114248512609729,0,0.407302655690628,0.193952487167626,0.140271639780637,0.316182685621286,0.147610147979602,0,0.370191491765402,0,0,0.196558995113203,0,0,0.241177159752417,0,0,0,0,0,0,0.312037673114561,0.252578877947112,0.179397413521912,0,0.369506380333209,0,0.162964976442026,0.339490171550376,0.469380496577004,0.502518772325447,2.38043640886014,0.585400943573396,1.10344600874334,0.44292937929755,0.797273843287435,1.96635977658886,1.55416483679306,2.02508682014116,0,0,0,0,0.642202359951168,1.05490517932983,0,0,0,0.390438744296638,1.72338718186239,0,0,0.283076530788832,0,0,0,1.92792789853084,0,0,0,0.164970122972535,0,0,0,0,0,0,0,0,0,0,0,0,0,0.900305470156551,0.646793418913773,0.428674070063185,0,0.356737635204141,0.493647061806363,1.522324745573,0,0.21183207086382,0,0,0.322928853391811,0.180938774784468,0.119372344003136,0.820704498725306,0,0.556275906031529,0,0,0,0.188368457004691,0,0,0,0,0,0,0,0,0.108005340821801,0.418176592028937,0,0.134864346384821,0.247960367176008,0,0.129614973291793,0,0,0.598066184175915,0.165458490457098,0.194451188344048,0.387479470433193,0.168956125490778,0.117357238645754,0,0.209718688851422,0,0,0,0,0.205421914329655,0.649604114888975,0,0.198681354781265,0.120195449519969,0,0,0,0.100826185136841,0,0,0,0.226730383615211,0,0,0,0,0,0,0,0,0.564751842617067,0,0.572895513439397,0.68741272937475,4.11049511862385,2.2661816921691,1.35004500046361,0.45032120322422,0.906284817968409,2.5888015587591,0.518936737920883,0.399024873401031,0.341467211508268,0,0,0,0.44449345560323,0,0,0.758091635291392,0.25347929989024,0.188626341386076,0.187283014939765,0.576226371643824,0.287177344778066,0,0.115884325944855,0.77163688185482,0,0.588795680537589,0,0.177475806159338,0.238436189947321,0.436039249896986,0.188218760830661,0.169229215783353,0.548783918618318,0,0.135804113845862,0,0,0,0,0.154936841185966,0.385813221962283,0.499621155875892,0.233931608445408,0.214871054048298,0.382576664137687,0.441182838239031,0.695603506861264 | |||
|short_description=p11@Tiam1 | |||
}} |
Revision as of 03:56, 4 August 2015
Short description: | p11@Tiam1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_11_at_Tiam1_5end |
Coexpression cluster: | MCL_coexpression_mm9:189 |
Association with transcript: | 0bp_to_ENSMUST00000133684, ENSMUST00000164263, NM_001145887, uc007zvs.2_5end |
EntrezGene: | 21844 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
raphe nuclei neuron | 1.43e-10 | 3 |
CNS neuron (sensu Vertebrata) | 7.89e-09 | 23 |
neuroblast (sensu Vertebrata) | 7.89e-09 | 23 |
neuron | 4.38e-07 | 33 |
neuronal stem cell | 4.38e-07 | 33 |
neuroblast | 4.38e-07 | 33 |
electrically signaling cell | 4.38e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 8.85e-18 | 54 |
central nervous system | 9.74e-17 | 73 |
nervous system | 3.65e-16 | 75 |
ectoderm-derived structure | 3.81e-13 | 95 |
ectoderm | 3.81e-13 | 95 |
presumptive ectoderm | 3.81e-13 | 95 |
neural tube | 1.50e-12 | 52 |
neural rod | 1.50e-12 | 52 |
future spinal cord | 1.50e-12 | 52 |
neural keel | 1.50e-12 | 52 |
neurectoderm | 6.62e-11 | 64 |
neural plate | 6.62e-11 | 64 |
presumptive neural plate | 6.62e-11 | 64 |
raphe nuclei | 1.43e-10 | 3 |
reticular formation | 1.43e-10 | 3 |
ecto-epithelium | 1.95e-10 | 73 |
brain | 2.19e-09 | 47 |
future brain | 2.19e-09 | 47 |
regional part of spinal cord | 3.94e-09 | 5 |
gray matter of spinal cord | 3.94e-09 | 5 |
anatomical conduit | 5.96e-09 | 122 |
tube | 8.34e-09 | 114 |
organ system subdivision | 2.58e-08 | 194 |
gray matter | 3.22e-08 | 34 |
regional part of brain | 3.61e-08 | 46 |
posterior neural tube | 1.26e-07 | 12 |
chordal neural plate | 1.26e-07 | 12 |
spinal cord | 1.27e-07 | 6 |
dorsal region element | 1.27e-07 | 6 |
dorsum | 1.27e-07 | 6 |
structure with developmental contribution from neural crest | 1.84e-07 | 92 |
anterior neural tube | 5.27e-07 | 40 |