FFCP PHASE1:Hg19::chr4:169401630..169401649,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=91351 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26429 | |||
|TSSclassifier=weak | |||
|UniProt=E9PAP8,D6R906,Q5H9U9 | |||
|association_with_transcript=0bp_to_ENST00000260184,ENST00000505890,ENST00000513901,NM_001012967,uc003irq.3,uc003irr.1,uc003irt.1_5end | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_1_at_DDX60L_5end | |||
|id=chr4:169401630..169401649,- | |||
|ontology_enrichment_celltype=CL:0000766!7.39e-33!76;CL:0000738!1.18e-29!140;CL:0002194!3.88e-29!63;CL:0000576!3.88e-29!63;CL:0000040!3.88e-29!63;CL:0000559!3.88e-29!63;CL:0000839!1.07e-28!70;CL:0000557!6.22e-28!71;CL:0002009!1.22e-27!65;CL:0002087!1.58e-27!119;CL:0002057!4.56e-27!42;CL:0000037!9.64e-27!172;CL:0000566!9.64e-27!172;CL:0000860!3.71e-26!45;CL:0002031!4.63e-26!124;CL:0002032!1.08e-25!165;CL:0000837!1.08e-25!165;CL:0000763!1.25e-24!112;CL:0000049!1.25e-24!112;CL:0000988!4.68e-22!182;CL:0000134!7.43e-09!358;CL:0002320!1.19e-07!365;CL:0000791!2.71e-07!18;CL:0000789!2.71e-07!18;CL:0002420!2.71e-07!18;CL:0002419!2.71e-07!18;CL:0000790!2.71e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.91e-20;33!CL:0002057;1.91e-20;33!CL:0000473;4.78e-19;39!CL:0000234;4.78e-19;39!CL:0000576;5.43e-19;48!CL:0000766;8.64e-16;69!CL:0000763;2.31e-09;100!CL:0002087;8.01e-09;104!CL:0000738;2.56e-07;136!CL:0000791;2.83e-07;18!CL:0000789;2.83e-07;18!CL:0002419;2.83e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.06e-33,72;CL:0002194,4.26e-30,59;CL:0000576,4.26e-30,59;CL:0000040,4.26e-30,59;CL:0000559,4.26e-30,59;CL:0000738,6.00e-30,136;CL:0000839,1.74e-29,66;CL:0000473,2.85e-29,48;CL:0000234,2.85e-29,48;CL:0000557,1.14e-28,67;CL:0002009,1.76e-28,61;CL:0002087,6.76e-28,115;CL:0000860,4.45e-27,42;CL:0002057,4.45e-27,42;CL:0000037,7.94e-27,168;CL:0002031,2.28e-26,120;CL:0002032,8.77e-26,161;CL:0000837,8.77e-26,161;CL:0000763,8.48e-25,108;CL:0000049,8.48e-25,108;CL:0000988,3.90e-22,177;CL:0000134,7.52e-09,354;CL:0002320,1.22e-07,361;CL:0000791,2.69e-07,18;CL:0000789,2.69e-07,18;CL:0002420,2.69e-07,18;CL:0002419,2.69e-07,18;CL:0000790,2.69e-07,18 | |||
|ontology_enrichment_development_v019=CL:0002057;1.13e-19;42!CL:0000049;4.33e-08;108!CL:0000790;2.83e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!8.38e-31!112;UBERON:0002390!8.62e-30!102;UBERON:0003061!8.62e-30!102;UBERON:0002371!1.90e-24!80;UBERON:0001474!2.71e-22!86;UBERON:0004765!2.87e-19!101;UBERON:0001434!2.87e-19!101;UBERON:0002405!6.86e-18!115;UBERON:0003081!1.12e-10!216;UBERON:0002204!8.58e-10!167;UBERON:0002384!4.89e-08!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,3.95e-31,108;UBERON:0002390,3.56e-30,98;UBERON:0003061,3.56e-30,98;UBERON:0002405,4.13e-27,93;UBERON:0002371,6.33e-25,76;UBERON:0001474,1.38e-22,82;UBERON:0004765,3.02e-20,90;UBERON:0001434,6.75e-18,100;UBERON:0003081,1.94e-12,203;UBERON:0002204,6.58e-09,167;UBERON:0002384,5.10e-08,371 | |||
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| |||
|short_description=p1@DDX60L | |||
}} |
Revision as of 03:54, 22 January 2014
Short description: | p1@DDX60L |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_DDX60L_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 0bp_to_ENST00000260184, ENST00000505890, ENST00000513901, NM_001012967, uc003irq.3, uc003irr.1, uc003irt.1_5end |
EntrezGene: | DDX60L |
HGNC: | 26429 |
UniProt: | E9PAP8D6R906Q5H9U9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 1.06e-33 | 72 |
monopoietic cell | 4.26e-30 | 59 |
monocyte | 4.26e-30 | 59 |
monoblast | 4.26e-30 | 59 |
promonocyte | 4.26e-30 | 59 |
leukocyte | 6.00e-30 | 136 |
myeloid lineage restricted progenitor cell | 1.74e-29 | 66 |
defensive cell | 2.85e-29 | 48 |
phagocyte | 2.85e-29 | 48 |
granulocyte monocyte progenitor cell | 1.14e-28 | 67 |
macrophage dendritic cell progenitor | 1.76e-28 | 61 |
nongranular leukocyte | 6.76e-28 | 115 |
classical monocyte | 4.45e-27 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.45e-27 | 42 |
hematopoietic stem cell | 7.94e-27 | 168 |
hematopoietic lineage restricted progenitor cell | 2.28e-26 | 120 |
hematopoietic oligopotent progenitor cell | 8.77e-26 | 161 |
hematopoietic multipotent progenitor cell | 8.77e-26 | 161 |
myeloid cell | 8.48e-25 | 108 |
common myeloid progenitor | 8.48e-25 | 108 |
hematopoietic cell | 3.90e-22 | 177 |
mesenchymal cell | 7.52e-09 | 354 |
connective tissue cell | 1.22e-07 | 361 |
mature alpha-beta T cell | 2.69e-07 | 18 |
alpha-beta T cell | 2.69e-07 | 18 |
immature T cell | 2.69e-07 | 18 |
mature T cell | 2.69e-07 | 18 |
immature alpha-beta T cell | 2.69e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 3.95e-31 | 108 |
hematopoietic system | 3.56e-30 | 98 |
blood island | 3.56e-30 | 98 |
immune system | 4.13e-27 | 93 |
bone marrow | 6.33e-25 | 76 |
bone element | 1.38e-22 | 82 |
skeletal element | 3.02e-20 | 90 |
skeletal system | 6.75e-18 | 100 |
lateral plate mesoderm | 1.94e-12 | 203 |
musculoskeletal system | 6.58e-09 | 167 |
connective tissue | 5.10e-08 | 371 |