FFCP PHASE1:Hg19::chr3:98558278..98558282,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport= | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr3:98558278..98558282,- | |||
|id=chr3:98558278..98558282,- | |||
|ontology_enrichment_celltype=CL:0000243!4.91e-08!15;CL:0000125!4.91e-08!15;CL:0000030!4.91e-08!15;CL:0000339!4.91e-08!15;CL:0000095!6.69e-07!17;CL:0000123!6.69e-07!17 | |||
|ontology_enrichment_celltype_v019=CL:0000064;2.38e-27;3!CL:0000067;2.38e-27;3!CL:0005012;2.38e-27;3!CL:0002304;2.38e-27;3!CL:0000322;6.13e-08;3!CL:0002579;6.13e-08;3!CL:0000075;2.99e-07;27 | |||
|ontology_enrichment_celltype_v019_2=CL:0000064,1.59e-27,3;CL:0000067,1.59e-27,3;CL:0005012,1.59e-27,3;CL:0002304,1.59e-27,3;CL:0000322,5.18e-08,3;CL:0002579,8.29e-08,3;CL:0000075,2.77e-07,27 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:193!7.93e-09!29;DOID:2394!1.46e-08!14;DOID:120!2.17e-08!27 | |||
|ontology_enrichment_disease_v019=DOID:3910;2.87e-11;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3910,2.23e-11,2 | |||
|ontology_enrichment_uberon=UBERON:0000488!6.19e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0001778;2.38e-27;3!UBERON:0001775;2.38e-27;3!UBERON:0000488;8.54e-21;4!UBERON:0007625;6.89e-17;11!UBERON:0002203;3.25e-14;6!UBERON:0001768;3.25e-14;6!UBERON:0002200;3.25e-14;6!UBERON:0001801;2.02e-13;14!UBERON:0004903;2.87e-11;2!UBERON:0002173;2.87e-11;2!UBERON:0002186;2.87e-11;2!UBERON:0000019;4.65e-10;19!UBERON:0000047;4.65e-10;19!UBERON:0004088;4.65e-10;19!UBERON:0010230;4.65e-10;19!UBERON:0000970;1.38e-09;20!UBERON:0002104;3.69e-09;21!UBERON:0001456;3.69e-09;21!UBERON:0000020;2.05e-08;23!UBERON:0006876;3.49e-08;11!UBERON:0001032;4.36e-08;24!UBERON:0004456;4.36e-08;24!UBERON:0004821;6.13e-08;3!UBERON:0007499;6.13e-08;3!UBERON:0003215;6.13e-08;3!UBERON:0010368;6.13e-08;3!UBERON:0009911;6.13e-08;3!UBERON:0002299;6.13e-08;3!UBERON:0006524;6.13e-08;3!UBERON:0008874;6.13e-08;3!UBERON:0002169;6.13e-08;3!UBERON:0004894;6.13e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001778,1.59e-27,3;UBERON:0001775,1.59e-27,3;UBERON:0000488,6.33e-21,4;UBERON:0007625,5.70e-17,11;UBERON:0002203,2.66e-14,6;UBERON:0001768,2.66e-14,6;UBERON:0002200,2.66e-14,6;UBERON:0001801,1.75e-13,14;UBERON:0004903,2.23e-11,2;UBERON:0002173,2.23e-11,2;UBERON:0002186,2.23e-11,2;UBERON:0000019,1.24e-09,20;UBERON:0000047,1.24e-09,20;UBERON:0010312,1.24e-09,20;UBERON:0004088,1.24e-09,20;UBERON:0010230,1.24e-09,20;UBERON:0003072,1.24e-09,20;UBERON:0004128,1.24e-09,20;UBERON:0003071,1.24e-09,20;UBERON:0000970,3.35e-09,21;UBERON:0002104,3.35e-09,21;UBERON:0001456,8.25e-09,22;UBERON:0006876,3.14e-08,11;UBERON:0003056,3.84e-08,61;UBERON:0000020,4.00e-08,24;UBERON:0001032,4.00e-08,24;UBERON:0004456,4.00e-08,24;UBERON:0004821,5.18e-08,3;UBERON:0003215,5.18e-08,3;UBERON:0010368,5.18e-08,3;UBERON:0009911,5.18e-08,3;UBERON:0002299,5.18e-08,3;UBERON:0006524,5.18e-08,3;UBERON:0008874,5.18e-08,3;UBERON:0002169,5.18e-08,3;UBERON:0004894,5.18e-08,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0.410623275218653,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.850813354476611,1.10864698731282,1.66886092816939,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,0,0,0,0,0,0.662045904066094,0.860509862246441,0.354668382198357,0,0,0,0,0,0,0,0,0.234321431833797,0,0,0.149448680551801,0,0,0,0,0.245668634623536,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0.538168907066586,0.213557388818567,0,0,0,0.257640540045629,0.18611685633159,0.168776332241266,0,0.504867548488229,0,0,0.355009592516614,0,0,0.193260853163297,0,0,0,0,0.116193942869518,0,0.252320850875628,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0.301586917234893,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0.335964256397719,0,0,0,0,0,0.528290604079356,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258543431515556,0,0,0,0,0.257207374262142,0,0,0.142977993658148,0,0,0,0,0,0.301439377059586,0,0.899756920638513,0,0,0,0.239624855491583,0,0,0.434343920002738,0.205476322550383,0.358121926479791,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02341449813341,0.160853921143607,0,0.462629081407967,0,0,0,0,0,0.200506470303285,0.0920809889358963,0,0.182091168006717,0,0,0.231046011313244,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0.256450125116389,0,0,0,0.0915694648183434,0,0,0,0,0,0.154048617114644,0.15350367472613,0.137836572484531,0.107420244868274,0.145016693914229,0.170453254832202,0,0,0,0.382838137483752,0,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142283686696828,0,0,0,0,0,0,0,0,0,0,0,0.201799707191048,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222886768554957,1.42068073403207,0,0,0,0,0.140669416410513,0.333926115068718,0,0,0,0,0,0.306806047506464,0,0,0.449341755736634,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0,0,0,0,0,0,0,0.166211681900156,0,0,0.167821586975843,0,0,0.210998064528027,0.326465616318295,0,0,0,0,0,0,0,0,0,0.802577647298789,0,0,0.19566461893209,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0.693373365065693,0,0,0,0.17472666824203,0,0,0,0,0,0,0.225980740780532,0.137041924646751,0.19871461170299,0.0633107959558787,0.195551382734803,0,0,0.39961921916426,0,0,0,0.14405479798815,1.11827282008889,0,1.08723364858891,0.836822770498666,0.305994652908965,0.288950589901519,0.600420288709789,0,0,0.429765441419957,0,0,0,0,0.199679000498991,0.429226048136571,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.714695326373367,0,0,0,0,0,1.19730191562487,0,0.340776043570843,0,0,0,0,0,0,0,0,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0,0.138348634936231,0,0,0,0.941063278792687,0,0,0.447764408660622,0,0,0.189403005275089,0,0,0,0.453692771289717,0.15543720058278,0.295710299979268,0.477890301491107,0,0,1.65882483136342,0.797525143673985,0.521745061811734,0.150257608997218,0.380805212168795,0,0.181848659202559,0.214821114084977,0,0.398095888698616,0,0,0,0,0,0,0.260994291965212,0,0.231522474323834,0,0,0,0.219284049578707,0,0.38582807654183,0.506827321959218,0.256241518587947,0.345430341731199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109209638192014,0.169732529954025,0,0,0,0,0.0788617450012534,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0.231051332300676,0.381382095467167,0,0,0.0752103283492573,0,0,0,0.49131575253029,0,0.0675375846183947,0,0,0,1.09394961803644,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0,0,0,0.444925607568277,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0.709992004383392,0.426067023795788,0,0.4582137370881,0,0,0.111855431797792,0.294450700845729,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0.0771741581079447,0,0,0.245148321753905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436350690340377,0,0.743990036333503,0,0,0,0,0.126698501011437,0,0,0,0,0,0.267964130156178,0,0,0,0,0.0645889098360061,0,0.112131862580613,0,0,0,0,0,0.0717222053926763,0,0.0814032686109745,0.106727345877715,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr3:98558278..98558282,- | |||
}} |
Revision as of 20:06, 21 January 2014
Short description: | p@chr3:98558278..98558282, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:98558278..98558282, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ciliated cell | 1.59e-27 | 3 |
ciliated epithelial cell | 1.59e-27 | 3 |
multi-ciliated epithelial cell | 1.59e-27 | 3 |
non-pigmented ciliary epithelial cell | 1.59e-27 | 3 |
pneumocyte | 5.18e-08 | 3 |
omentum preadipocyte | 8.29e-08 | 3 |
columnar/cuboidal epithelial cell | 2.77e-07 | 27 |
Ontology term | p-value | n |
---|---|---|
ciliary epithelium | 1.59e-27 | 3 |
ciliary body | 1.59e-27 | 3 |
atypical epithelium | 6.33e-21 | 4 |
pigment epithelium of eye | 5.70e-17 | 11 |
vasculature of eye | 2.66e-14 | 6 |
uvea | 2.66e-14 | 6 |
vasculature of head | 2.66e-14 | 6 |
anterior segment of eyeball | 1.75e-13 | 14 |
bronchoalveolar duct junction | 2.23e-11 | 2 |
alveolar duct | 2.23e-11 | 2 |
bronchiole | 2.23e-11 | 2 |
camera-type eye | 1.24e-09 | 20 |
simple eye | 1.24e-09 | 20 |
immature eye | 1.24e-09 | 20 |
ocular region | 1.24e-09 | 20 |
eyeball of camera-type eye | 1.24e-09 | 20 |
optic cup | 1.24e-09 | 20 |
optic vesicle | 1.24e-09 | 20 |
eye primordium | 1.24e-09 | 20 |
eye | 3.35e-09 | 21 |
visual system | 3.35e-09 | 21 |
face | 8.25e-09 | 22 |
vasculature of organ | 3.14e-08 | 11 |
pre-chordal neural plate | 3.84e-08 | 61 |
sense organ | 4.00e-08 | 24 |
sensory system | 4.00e-08 | 24 |
entire sense organ system | 4.00e-08 | 24 |
pulmonary alveolus epithelium | 5.18e-08 | 3 |
alveolus | 5.18e-08 | 3 |
pulmonary lobule | 5.18e-08 | 3 |
lobule | 5.18e-08 | 3 |
alveolus of lung | 5.18e-08 | 3 |
alveolar system | 5.18e-08 | 3 |
pulmonary acinus | 5.18e-08 | 3 |
alveolar sac | 5.18e-08 | 3 |
alveolar wall | 5.18e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
lung adenocarcinoma | 2.23e-11 | 2 |