FFCP PHASE1:Hg19::chr2:241679478..241679495,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C825 | |||
|description=CAGE_peak_at_chr2:241679478..241679495,+ | |||
|id=chr2:241679478..241679495,+ | |||
|ontology_enrichment_celltype=CL:0000791!2.82e-33!18;CL:0000789!2.82e-33!18;CL:0002420!2.82e-33!18;CL:0002419!2.82e-33!18;CL:0000790!2.82e-33!18;CL:0000084!4.48e-23!25;CL:0000827!4.48e-23!25;CL:0000625!2.70e-21!11;CL:0000624!6.86e-16!6;CL:0000838!1.20e-14!52;CL:0000542!2.68e-14!53;CL:0000051!2.68e-14!53;CL:0000842!3.71e-11!3;CL:0000623!5.48e-11!3;CL:0000825!5.48e-11!3;CL:0000224!1.77e-08!4 | |||
|ontology_enrichment_celltype_v019=CL:0000791;8.20e-23;18!CL:0000789;8.20e-23;18!CL:0002419;8.20e-23;18!CL:0000084;1.81e-16;25!CL:0000625;4.52e-14;11!CL:0000624;6.34e-12;6!CL:0000815;1.51e-09;2!CL:0000792;1.51e-09;2!CL:0002677;1.51e-09;2!CL:0000898;8.86e-07;3!CL:0002178;8.86e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,9.63e-23,18;CL:0000789,9.63e-23,18;CL:0002420,9.63e-23,18;CL:0002419,9.63e-23,18;CL:0000790,9.63e-23,18;CL:0000084,2.03e-16,25;CL:0000827,2.03e-16,25;CL:0000625,5.78e-14,11;CL:0000624,5.68e-12,6;CL:0000815,1.71e-09,2;CL:0000792,1.71e-09,2;CL:0002677,1.71e-09,2;CL:0000838,6.42e-08,52;CL:0000542,9.06e-08,53;CL:0000051,9.06e-08,53;CL:0002178,7.70e-07,3;CL:0000898,9.64e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;8.20e-23;18!UBERON:0006215;8.86e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3111;3.74e-18;1!DOID:3603;3.74e-18;1!DOID:4929;9.46e-10;2!DOID:3493;1.51e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3111,3.75e-18,1;DOID:3603,3.75e-18,1;DOID:4929,8.69e-10,2;DOID:3493,1.22e-09,2 | |||
|ontology_enrichment_uberon=UBERON:0000178!4.11e-08!15;UBERON:0000179!4.11e-08!15;UBERON:0000463!4.11e-08!15;UBERON:0001049!2.15e-07!57;UBERON:0005068!2.15e-07!57;UBERON:0006241!2.15e-07!57;UBERON:0007135!2.15e-07!57;UBERON:0002616!4.63e-07!59 | |||
|ontology_enrichment_uberon_v019=UBERON:0004913;3.74e-18;1!UBERON:0003703;3.74e-18;1!UBERON:0001174;3.74e-18;1!UBERON:0004914;3.74e-18;1!UBERON:0002394;7.38e-18;4!UBERON:0003928;7.38e-18;4!UBERON:0002294;1.26e-10;7!UBERON:0001173;1.26e-10;7!UBERON:0000058;1.05e-07;10!UBERON:0002114;6.50e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004913,3.16e-18,1;UBERON:0003703,3.16e-18,1;UBERON:0001174,3.16e-18,1;UBERON:0004914,3.16e-18,1;UBERON:0002394,2.91e-12,6;UBERON:0003928,2.91e-12,6;UBERON:0002294,1.77e-08,9;UBERON:0001173,1.77e-08,9;UBERON:0004912,1.77e-08,9;UBERON:0002114,6.14e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393419540227666,1.96505381374582,0.616804496998528,0,1.30368906653436,0.473447805734733,0,0,0,0,0,0,0,0,0,0,1.33457906845854,0.535081656179426,0,0.113309342697566,0.383220493601921,0,0.253019692019503,0.95569624297229,1.30216690771284,0,0.451725357233318,0.76791966692651,0,0.710331756132051,0,1.41124720257313,0.534880391567015,1.30341963494519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0.215627574859517,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.215714200818617,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192190067365106,0,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569647187174163,0.238231775457789,0,0,0,0.79312517629427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0.276283915531148,0,0,0,0,8.17801995440674,0,0,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0.173624994933292,0,0,1.52581736317083,0.110579259931225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.53574548030352,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.319267718114302,0,0,0.0691572524642179,0,0,0,0,0,0.346576998451015,0,0,0,0,0,0,0,0,2.66140955190681,0,0,0,0,0,0,0,0,0,0,0.336283722218824,0.606965604236632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.66855397145913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.32699963398588,0,0,0.286679166302903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0,0,0,0,0,0,0,0,0,0,0,0,0.814032686109745,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr2:241679478..241679495,+ | |||
}} |
Revision as of 09:36, 21 January 2014
Short description: | p@chr2:241679478..241679495, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:241679478..241679495, + |
Coexpression cluster: | C825_bile_papillotubular_mucinous_Neutrophils_Gingival_squamous_giant |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 9.63e-23 | 18 |
alpha-beta T cell | 9.63e-23 | 18 |
immature T cell | 9.63e-23 | 18 |
mature T cell | 9.63e-23 | 18 |
immature alpha-beta T cell | 9.63e-23 | 18 |
T cell | 2.03e-16 | 25 |
pro-T cell | 2.03e-16 | 25 |
CD8-positive, alpha-beta T cell | 5.78e-14 | 11 |
CD4-positive, alpha-beta T cell | 5.68e-12 | 6 |
regulatory T cell | 1.71e-09 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.71e-09 | 2 |
naive regulatory T cell | 1.71e-09 | 2 |
lymphoid lineage restricted progenitor cell | 6.42e-08 | 52 |
lymphocyte | 9.06e-08 | 53 |
common lymphoid progenitor | 9.06e-08 | 53 |
epithelial cell of stomach | 7.70e-07 | 3 |
naive T cell | 9.64e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
hepatopancreatic ampulla | 3.16e-18 | 1 |
extrahepatic bile duct | 3.16e-18 | 1 |
common bile duct | 3.16e-18 | 1 |
duodenal papilla | 3.16e-18 | 1 |
bile duct | 2.91e-12 | 6 |
digestive system duct | 2.91e-12 | 6 |
biliary system | 1.77e-08 | 9 |
biliary tree | 1.77e-08 | 9 |
biliary bud | 1.77e-08 | 9 |
duodenum | 6.14e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
cystadenocarcinoma | 3.75e-18 | 1 |
mucinous cystadenocarcinoma | 3.75e-18 | 1 |
tubular adenocarcinoma | 8.69e-10 | 2 |
signet ring cell adenocarcinoma | 1.22e-09 | 2 |