FFCP PHASE1:Hg19::chr2:231789941..231789975,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9290 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4511 | |||
|TSSclassifier=strong | |||
|UniProt=Q9Y2T6,C9J1P7,A8K858 | |||
|association_with_transcript=0bp_to_ENST00000392040,ENST00000438398,ENST00000444078,NM_005683,uc002vrf.2,uc002vrg.2_5end | |||
|coexpression_cluster_id=C3491 | |||
|description=CAGE_peak_1_at_GPR55_5end | |||
|id=chr2:231789941..231789975,- | |||
|ontology_enrichment_celltype=CL:0000738!1.68e-39!140;CL:0000037!1.02e-38!172;CL:0000566!1.02e-38!172;CL:0000988!2.06e-38!182;CL:0002032!7.22e-36!165;CL:0000837!7.22e-36!165;CL:0002087!7.77e-35!119;CL:0000542!7.07e-34!53;CL:0000051!7.07e-34!53;CL:0000838!4.14e-33!52;CL:0002031!1.17e-31!124;CL:0000791!8.35e-21!18;CL:0000789!8.35e-21!18;CL:0002420!8.35e-21!18;CL:0002419!8.35e-21!18;CL:0000790!8.35e-21!18;CL:0000084!1.46e-18!25;CL:0000827!1.46e-18!25;CL:0000625!1.20e-13!11;CL:0000945!2.11e-13!24;CL:0000826!2.11e-13!24;CL:0000451!9.04e-13!10;CL:0000990!2.68e-11!8;CL:0000763!1.13e-09!112;CL:0000049!1.13e-09!112;CL:0000453!2.97e-08!5;CL:0000236!1.19e-07!14;CL:0000624!1.36e-07!6;CL:0000840!2.79e-07!5;CL:0001029!2.79e-07!5;CL:0002393!2.82e-07!9;CL:0002397!2.82e-07!9;CL:0002009!3.86e-07!65;CL:0000080!6.58e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000791;2.12e-29;18!CL:0000789;2.12e-29;18!CL:0002419;2.12e-29;18!CL:0000084;1.14e-25;25!CL:0000625;8.87e-20;11!CL:0000542;5.10e-19;53!CL:0000945;7.04e-14;24!CL:0000453;1.06e-13;5!CL:0000990;5.78e-10;8!CL:0000624;3.37e-09;6!CL:0000451;5.46e-08;10!CL:0000898;1.30e-07;3!CL:0000236;2.21e-07;13!CL:0002087;4.86e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,2.25e-35,52;CL:0000542,1.56e-34,53;CL:0000051,1.56e-34,53;CL:0000791,1.81e-29,18;CL:0000789,1.81e-29,18;CL:0002420,1.81e-29,18;CL:0002419,1.81e-29,18;CL:0000790,1.81e-29,18;CL:0000084,7.76e-26,25;CL:0000827,7.76e-26,25;CL:0000738,1.36e-21,136;CL:0000988,1.06e-20,177;CL:0000037,2.65e-20,168;CL:0002087,7.13e-20,115;CL:0000625,8.74e-20,11;CL:0002032,1.44e-19,161;CL:0000837,1.44e-19,161;CL:0002031,5.98e-19,120;CL:0000945,4.95e-14,24;CL:0000826,4.95e-14,24;CL:0000453,1.05e-13,5;CL:0000990,5.24e-10,8;CL:0000624,2.79e-09,6;CL:0000236,3.71e-09,14;CL:0000451,5.04e-08,10;CL:0000898,1.07e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;2.12e-29;18!CL:0000051;5.10e-19;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.83e-15!102;UBERON:0003061!2.83e-15!102;UBERON:0002193!1.88e-14!112;UBERON:0000178!8.47e-12!15;UBERON:0000179!8.47e-12!15;UBERON:0000463!8.47e-12!15;UBERON:0004177!2.40e-09!7;UBERON:0007023!1.86e-08!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.66e-15;15!UBERON:0000179;1.66e-15;15!UBERON:0000463;1.66e-15;15!UBERON:0002390;7.65e-13;32!UBERON:0004177;9.12e-12;5!UBERON:0005057;9.12e-12;5!UBERON:0002193;2.22e-08;42!UBERON:0002106;8.42e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,1.10e-15,7;UBERON:0005057,1.10e-15,7;UBERON:0000178,1.98e-15,15;UBERON:0000179,1.98e-15,15;UBERON:0000463,1.98e-15,15;UBERON:0002370,1.38e-09,4;UBERON:0005058,1.38e-09,4;UBERON:0009113,1.38e-09,4;UBERON:0003295,1.38e-09,4;UBERON:0005562,1.38e-09,4;UBERON:0002193,6.09e-09,108;UBERON:0002390,1.40e-08,98;UBERON:0003061,1.40e-08,98;UBERON:0002106,8.85e-08,3;UBERON:0004854,8.85e-08,3;UBERON:0009034,8.85e-08,3;UBERON:0002095,8.85e-08,3;UBERON:0004782,8.85e-08,3;UBERON:0003281,8.85e-08,3;UBERON:0009664,8.85e-08,3;UBERON:0002296,8.85e-08,3;UBERON:0005602,8.85e-08,3;UBERON:0001179,8.85e-08,3;UBERON:0006293,8.85e-08,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.63471484951849,9.76997014454354,7.32010266217217,0.393364276848904,0.767658796194425,0.309632246632152,0,0,0,0.0774672005803016,0,0,3.87796785972314,2.4065333696417,2.82114131930607,0.223915474239924,1.6194683300949,0,0,0,0,0,0,0.619412741790207,0,0,0,0.344745680736619,0,0,0.188242339542605,0,0.224723484445085,0,0,0,0,0.598390972864896,0,0,0,0,0,0.521482918420201,0,0,0.368277635987565,0,0.422510572623884,0,0.209658645508376,0.336985893439485,0.300353785683013,0,0.285012743741249,0.59675003159727,0.365328307529268,5.27988733383968,1.09227722252426,1.77901850772711,0.853460445133014,2.40237592221607,1.72425731986345,1.98313461835459,1.90810750907073,0,0,0.764546456250458,0,0,0,1.7703879310245,1.17903228824749,0.411202997999018,17.0530225298492,2.93330039970231,1.4203434172042,7.79306913631645,17.0457999034316,5.30290633454707,6.20294904834139,6.77009659412539,25.1058986662323,22.3702077802991,13.6483460821051,9.94860064029054,9.56350182925673,1.92772532110679,1.33770414044857,2.09071047609954,16.9964014046349,1.53288197440768,1.71813722741315,2.27717722817553,4.45991580053735,3.90650072313851,3.8018081777935,4.51725357233318,4.47953139040464,4.99722906209383,2.60454977248419,2.46338399076314,1.41124720257313,0.802320587350522,1.15859523106239,0,0,0,0,0,0,0,0,0,0,0,0.458426764241994,0,0,0.97364218096405,0.348259474598534,0.26591592103773,1.66943437013739,0.571994910780128,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492434012174795,0,0.297262324577456,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.03506518376698,0.591092280605782,0.431255149719035,0.385029108839245,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6541442089831,0.215714200818617,1.06727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0.145016693914229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,2.02979043692868,1.52927441428475,1.70894156152249,3.33524485640905,1.23408681925858,2.59389324477087,3.7802200606668,0,0,0,0,0.371606350251437,0,0.0711418433484141,0,0,0,0.423347165447766,0,1.12318871245384,1.14117339516596,0.313359791546046,2.50634477090067,0,0,0.201799707191048,0.851692475380653,1.37402137902306,0.921722292925374,1.3420566473545,0.500547425135725,2.14926904942244,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,3.59169090190492,0,0,9.60061482596342,0,0,0,0,0.394573622547734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307801034015188,0,0,0,0,0,0,0,0,0,0.166211681900156,0,0,0,0,0.317873157960757,0,0,0,0,0,2.0345239835768,0.611030144933625,0.889563386041866,1.60633120630454,1.56632924258183,0.269604531922708,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290967049465258,0,0,0,0,0.126621591911757,0,0,0.640358984218058,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.89176089707246,0,0,0,0.199679000498991,0,0,0.0671834724867263,0,0,0,0,0,0,0.338693328263138,0,0,0,0,0,8.54900787895702,6.96421759102155,0.0607495566580247,0,0.315222829196793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213574825135389,0.157204305099666,0.828478110694391,4.46549419630756,7.11401874832599,0.243585196761792,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,38.7772014590383,31.4889671542671,21.5906320417714,0,0,0,2.99981093782395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0.128458450192919,0,0,0.205116364240755,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0.206686796501184,0.0634158101939068,0,0.548257766857182,0,0,0,0,0,0,0,0,5.87693336534474,0,0.135939465953663,0.263091094251396,0,0,0.549451649953598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.846774100381858,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.09023037972107,0.437119121007915,0,0,0,0,0,0,0,2.44358186747619,1.4180735354187,17.3897611309376,0,0,0,0,0.917458566809082,0,0,0.0679914901909147,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0661699095049,0.23806443146374,2.45437857376823,2.85543685760946,0,0.12729431655633,0,0.435433495793923,0,5.388164241167,0.645499848534087,0,0,0,0,0,0,0.366724332548599,0,0,2.01273793591026,9.29648627679376 | |||
|short_description=p1@GPR55 | |||
}} |
Revision as of 09:07, 21 January 2014
Short description: | p1@GPR55 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GPR55_5end |
Coexpression cluster: | C3491_migratory_CD4_splenic_immature_xeroderma_b_lymphangiectasia |
Association with transcript: | 0bp_to_ENST00000392040, ENST00000438398, ENST00000444078, NM_005683, uc002vrf.2, uc002vrg.2_5end |
EntrezGene: | GPR55 |
HGNC: | 4511 |
UniProt: | Q9Y2T6C9J1P7A8K858 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 2.25e-35 | 52 |
lymphocyte | 1.56e-34 | 53 |
common lymphoid progenitor | 1.56e-34 | 53 |
mature alpha-beta T cell | 1.81e-29 | 18 |
alpha-beta T cell | 1.81e-29 | 18 |
immature T cell | 1.81e-29 | 18 |
mature T cell | 1.81e-29 | 18 |
immature alpha-beta T cell | 1.81e-29 | 18 |
T cell | 7.76e-26 | 25 |
pro-T cell | 7.76e-26 | 25 |
leukocyte | 1.36e-21 | 136 |
hematopoietic cell | 1.06e-20 | 177 |
hematopoietic stem cell | 2.65e-20 | 168 |
nongranular leukocyte | 7.13e-20 | 115 |
CD8-positive, alpha-beta T cell | 8.74e-20 | 11 |
hematopoietic oligopotent progenitor cell | 1.44e-19 | 161 |
hematopoietic multipotent progenitor cell | 1.44e-19 | 161 |
hematopoietic lineage restricted progenitor cell | 5.98e-19 | 120 |
lymphocyte of B lineage | 4.95e-14 | 24 |
pro-B cell | 4.95e-14 | 24 |
Langerhans cell | 1.05e-13 | 5 |
conventional dendritic cell | 5.24e-10 | 8 |
CD4-positive, alpha-beta T cell | 2.79e-09 | 6 |
B cell | 3.71e-09 | 14 |
dendritic cell | 5.04e-08 | 10 |
naive T cell | 1.07e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
hemopoietic organ | 1.10e-15 | 7 |
immune organ | 1.10e-15 | 7 |
blood | 1.98e-15 | 15 |
haemolymphatic fluid | 1.98e-15 | 15 |
organism substance | 1.98e-15 | 15 |
thymus | 1.38e-09 | 4 |
hemolymphoid system gland | 1.38e-09 | 4 |
thymic region | 1.38e-09 | 4 |
pharyngeal gland | 1.38e-09 | 4 |
thymus primordium | 1.38e-09 | 4 |
hemolymphoid system | 6.09e-09 | 108 |
hematopoietic system | 1.40e-08 | 98 |
blood island | 1.40e-08 | 98 |
spleen | 8.85e-08 | 3 |
gastrointestinal system mesentery | 8.85e-08 | 3 |
stomach region | 8.85e-08 | 3 |
mesentery | 8.85e-08 | 3 |
gastrointestinal system serosa | 8.85e-08 | 3 |
mesentery of stomach | 8.85e-08 | 3 |
gut mesentery | 8.85e-08 | 3 |
dorsal mesentery | 8.85e-08 | 3 |
dorsal mesogastrium | 8.85e-08 | 3 |
peritoneal cavity | 8.85e-08 | 3 |
spleen primordium | 8.85e-08 | 3 |