FFCP PHASE1:Hg19::chr2:16080635..16080650,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4613 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7559 | |||
|TSSclassifier=strong | |||
|UniProt=P04198,Q53XS5 | |||
|association_with_transcript=-32bp_to_NM_005378,uc002rci.2_5end | |||
|coexpression_cluster_id=C135 | |||
|description=CAGE_peak_4_at_MYCN_5end | |||
|id=chr2:16080635..16080650,+ | |||
|ontology_enrichment_celltype=CL:0000047!6.80e-10!8;CL:0000039!1.84e-08!7;CL:0000586!1.84e-08!7;CL:0000540!5.46e-08!6;CL:0000031!5.46e-08!6;CL:0000404!5.46e-08!6;CL:0002322!3.98e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0002321;1.73e-18;15!CL:0000540;8.21e-18;6!CL:0000404;8.21e-18;6!CL:0002322;1.65e-15;5!CL:0000039;2.07e-15;7!CL:0000586;2.07e-15;7!CL:0002319;7.87e-11;25!CL:0000333;2.88e-10;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,1.71e-22,8;CL:0000540,1.04e-17,6;CL:0000031,1.04e-17,6;CL:0000404,1.04e-17,6;CL:0002322,1.50e-15,5;CL:0000039,2.39e-15,7;CL:0000586,2.39e-15,7;CL:0000133,4.05e-11,59;CL:0002319,1.07e-10,25;CL:0000221,2.13e-08,72 | |||
|ontology_enrichment_development_v019=CL:0000031;8.21e-18;6!UBERON:0009117;2.80e-07;10!UBERON:0005564;2.80e-07;10!CL:0000133;8.34e-07;59 | |||
|ontology_enrichment_disease=DOID:3095!7.14e-09!22;DOID:2994!7.14e-09!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;2.06e-17;22!DOID:2994;2.06e-17;22!DOID:169;1.52e-08;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,2.41e-17,22;DOID:2994,2.41e-17,22;DOID:169,1.78e-08,6 | |||
|ontology_enrichment_uberon=UBERON:0000073!7.42e-26!94;UBERON:0001016!7.42e-26!94;UBERON:0001017!8.57e-26!82;UBERON:0005743!6.72e-25!86;UBERON:0001049!6.80e-22!57;UBERON:0005068!6.80e-22!57;UBERON:0006241!6.80e-22!57;UBERON:0007135!6.80e-22!57;UBERON:0002346!2.50e-17!90;UBERON:0003075!2.51e-17!86;UBERON:0007284!2.51e-17!86;UBERON:0002616!4.29e-17!59;UBERON:0002020!1.17e-16!34;UBERON:0003528!1.17e-16!34;UBERON:0002791!1.60e-16!33;UBERON:0000955!1.87e-16!69;UBERON:0006238!1.87e-16!69;UBERON:0007023!1.89e-16!115;UBERON:0002780!2.97e-16!41;UBERON:0001890!2.97e-16!41;UBERON:0006240!2.97e-16!41;UBERON:0001893!8.91e-16!34;UBERON:0000924!1.02e-15!173;UBERON:0006601!1.02e-15!173;UBERON:0003080!1.26e-15!42;UBERON:0004121!1.62e-15!169;UBERON:0001869!2.85e-14!32;UBERON:0003056!5.47e-12!61;UBERON:0000956!3.31e-11!25;UBERON:0000203!3.31e-11!25;UBERON:0001950!1.16e-10!20;UBERON:0002619!2.60e-10!22;UBERON:0000153!3.65e-10!129;UBERON:0007811!3.65e-10!129;UBERON:0000033!5.50e-09!123;UBERON:0003076!1.52e-07!15;UBERON:0003057!1.52e-07!15;UBERON:0002308!3.80e-07!9;UBERON:0000125!3.80e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;9.88e-11;49!UBERON:0000013;2.88e-10;5!UBERON:0002410;2.88e-10;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,9.34e-12,89;UBERON:0000013,3.48e-10,5;UBERON:0002410,3.48e-10,5;UBERON:0001017,1.19e-08,81 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0.218441372130172,1.84636884759917,0,0,0,0,0,0,0.492484232307152,0.204000691244253,0.313454721478088,1.71741592278634,0,1.00434111675842,0,0,0,0,0,0.309632246632152,0,0,0,0,0,5.5784083473621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75996244461323,0,0,0,0,0,0,0,0,0,0,9.25199300053181,5.60508562981536,0.526768169550154,0,0,0,0,0,0.473447805734733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.378139268656271,0,0,0.327447688744282,0,0,0,0,0,0,0,0,0.39752481473341,0,0.347140501607594,0,0,0,0,0.258416759169329,0,0.33472061276467,0,0,0.976248230192678,0,0,0.267899184852239,0,0.225222960966644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.31842236777572,9.93973262411139,4.99633954338929,4.14644220061482,6.56034212276634,2.91981887260664,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47586126251736,0.171567810298526,0,0,0,0.0925884451585296,0,0,0,0.695582429850461,0,0.144366447761074,0.462985512576611,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0.12624243342638,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01637849688985,5.20559415430487,3.09315525111078,6.03058555203656,3.18969375826582,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.81434175997808,0,0,0,0,0,0,0,0,0,0,0,0,1.81289174387433,0,0,0,0,0.131124414959424,0,0.0770153371044148,0,0,0,0,0.340187410553031,0,0,0,0,0,0,0.223874754722178,0,0,0,0.656029291399411,0,0.206082023295445,0,0.082509499920588,0,0,0,0.48335359146061,0,0.15350367472613,0,0,0,0.0852266274161009,0.178064071293475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159426272728822,1.79621434289535,12.4478490586038,2.75175657541048,0.324621940274555,1.96558024679421,0,0,0,3.55512733383367,0,0,0,0,0,0,0,0,0,0,1.08182271390393,3.3307196799782,0,0,0.146508179271894,0,0.111443384277478,0,1.19372242368845,1.18785872333055,1.22864280839693,0,0.562677665642051,0,0,6.5448876519678,0,0,0,0.102268682502155,0,0,0,0,0,0.0986434056369336,0,0,0,1.02044907978036,3.99227596002388,0,0.0874599999961957,0,0,0,0.236387681767936,32.0611337114562,0,0.173624994933292,0.885741385813839,0.361789315876224,0,0,0.295547618953547,0.219385397153973,0,0,0.230850775511391,0,6.22522541847762,10.0528561738945,0.217294743844016,1.5950057986596,0.274792780205587,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0.848118428603645,1.08194319871046,0,0.265372693510018,0.611030144933625,0,0,0,0.808813595768125,0,0.234264445725339,0,0.19566461893209,0,0,2.41981432097328,7.34574627913176,0.252746318513952,0,0,0,0,0,0,0,0,0.520679215005393,0,0,0.17472666824203,0,0,0,0,0,0,0.677942222341597,0,0,0.50648636764703,5.67099009930929,0,0.640358984218058,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0.547621515567972,0,0,0.262887354279314,0,0.458320848023367,0,1.39775300349294,0,0,0.268733889946905,0,1.16495949527454,0,0,0,0,0,0,0.136203406111576,4.50108815702054,5.22649859069488,8.3088067605837,0,0,0.546746009922222,0,0.236417121897595,1.67854682031994,0,0.179287339332845,0,0,0,0,0,0.864221491201268,0,0,0.082092520749339,0,0,0,0,0.258565912723101,0.13223260174269,0,0,0.213574825135389,0.157204305099666,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0.732157589411779,0.1251909307065,1.14681839138014,0.221858103073705,0.558867626472451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521745061811734,0,0,0,0,0.429642228169954,0,0,0,0,0,1.26184898228651,0,0.857766365499703,0.260994291965212,0,0,0,0,2.77921302444875,0,0,0,0,0.512483037175893,0,0,0.553033744606923,0,0,0,0,0,0,0,0.106691729694141,0,0,0,0,0.622077260032973,41.3098819310795,110.736081304392,0,149.071156132099,0,0.212574920101683,0.123935764259002,1.11728983594649,0,0.157723490002507,0,0,0,0.578063025868136,0,0.638535436228605,0.82046545696302,6.55386410176467,0.553258019713743,0.322951291263702,0,0,0,0,0,0,0,0,0,0,0,2.61906694481422,0,0,0,0,0.206686796501184,0.507326481551255,4.37579847214576,0.548257766857182,0.496211178389294,0,0,0.535701835878287,1.68141861109412,0,0,0.79832133146375,0,0,0.40781839786099,0.526182188502793,0,0,0,0.157115589916002,0,0,0.215927591218621,0,0,60.0451724584361,0.116241425368125,0.521574816907738,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0.559277158988962,0,0.121917924982269,0,0.205325613712494,1.1598144313382,0,0.467878926924211,1.19370465096821,0,0,0.549702583727146,0,0.231522474323834,1.31135736302374,0,0,0,0.588925401344836,0.594092800654172,0.4226557275834,0,0.187967835959707,0.128915775947154,0,0,0,0,0,0,0.860037498908708,0.631086248772738,1.15585533324555,3.9271562130634,0.5290268405154,0,0,0,3.65882632021729,4.9169507383663,0,4.89546382761512,4.00826107898341,6.3407480679043,4.26202816797038,0.378893491091197,0.535928260312357,0,0.310298987585686,0.639701945702943,0.952257725854961,0.4521223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| |||
|short_description=p4@MYCN | |||
}} |
Revision as of 01:49, 21 January 2014
Short description: | p4@MYCN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_MYCN_5end |
Coexpression cluster: | C135_neuroblastoma_retinoblastoma_carcinoid_choriocarcinoma_testicular_acute_rectum |
Association with transcript: | -32bp_to_NM_005378, uc002rci.2_5end |
EntrezGene: | MYCN |
HGNC: | 7559 |
UniProt: | P04198Q53XS5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 1.71e-22 | 8 |
neuron | 1.04e-17 | 6 |
neuroblast | 1.04e-17 | 6 |
electrically signaling cell | 1.04e-17 | 6 |
embryonic stem cell | 1.50e-15 | 5 |
germ line cell | 2.39e-15 | 7 |
germ cell | 2.39e-15 | 7 |
neurectodermal cell | 4.05e-11 | 59 |
neural cell | 1.07e-10 | 25 |
ectodermal cell | 2.13e-08 | 72 |
Ontology term | p-value | n |
---|---|---|
nervous system | 9.34e-12 | 89 |
sympathetic nervous system | 3.48e-10 | 5 |
autonomic nervous system | 3.48e-10 | 5 |
central nervous system | 1.19e-08 | 81 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 2.41e-17 | 22 |
germ cell cancer | 2.41e-17 | 22 |
neuroendocrine tumor | 1.78e-08 | 6 |