FFCP PHASE1:Hg19::chr1:90286531..90286556,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55144 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16992 | |||
|TSSclassifier=strong | |||
|UniProt=E9PJ89,B3KRU1,Q7L1W4 | |||
|association_with_transcript=-16bp_to_ENST00000525774,NM_001134479,uc001dnm.2_5end | |||
|description=CAGE_peak_3_at_LRRC8D_5end | |||
|id=chr1:90286531..90286556,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!8.91e-11!239;DOID:162!2.21e-10!235;DOID:0050687!2.12e-07!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:14566,3.72e-10,239;DOID:162,6.93e-10,235;DOID:0050687,2.99e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0000073!2.93e-17!94;UBERON:0001016!2.93e-17!94;UBERON:0005743!2.52e-16!86;UBERON:0001017!3.47e-15!82;UBERON:0001049!4.97e-14!57;UBERON:0005068!4.97e-14!57;UBERON:0006241!4.97e-14!57;UBERON:0007135!4.97e-14!57;UBERON:0002780!3.12e-12!41;UBERON:0001890!3.12e-12!41;UBERON:0006240!3.12e-12!41;UBERON:0000955!6.87e-12!69;UBERON:0006238!6.87e-12!69;UBERON:0002616!9.71e-12!59;UBERON:0003080!1.29e-11!42;UBERON:0003075!4.58e-11!86;UBERON:0007284!4.58e-11!86;UBERON:0001893!1.02e-10!34;UBERON:0002346!1.69e-10!90;UBERON:0002020!1.74e-10!34;UBERON:0003528!1.74e-10!34;UBERON:0002791!2.53e-10!33;UBERON:0001869!5.97e-10!32;UBERON:0003056!4.46e-09!61;UBERON:0000956!6.37e-08!25;UBERON:0000203!6.37e-08!25;UBERON:0001950!8.75e-08!20;UBERON:0007023!9.16e-08!115;UBERON:0002619!1.16e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;8.16e-10;34!UBERON:0003528;1.33e-09;34!UBERON:0002020;1.33e-09;34!UBERON:0002780;1.61e-09;41!UBERON:0001890;1.61e-09;41!UBERON:0001869;2.30e-09;32!UBERON:0002791;2.44e-09;32!UBERON:0000073;9.76e-09;53!UBERON:0002616;9.76e-09;53!UBERON:0000956;5.16e-08;25!UBERON:0000203;5.16e-08;25!UBERON:0001950;9.28e-08;20!UBERON:0002619;1.29e-07;22!UBERON:0001016;3.93e-07;83!UBERON:0000955;5.29e-07;68!UBERON:0001017;8.91e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,7.42e-17,89;UBERON:0001017,1.05e-15,81;UBERON:0001049,6.08e-15,56;UBERON:0005068,6.08e-15,56;UBERON:0006241,6.08e-15,56;UBERON:0007135,6.08e-15,56;UBERON:0000073,4.56e-14,53;UBERON:0002616,4.56e-14,53;UBERON:0002780,9.57e-13,41;UBERON:0001890,9.57e-13,41;UBERON:0003080,9.57e-13,41;UBERON:0006240,9.57e-13,41;UBERON:0000955,2.16e-12,68;UBERON:0006238,2.16e-12,68;UBERON:0001893,3.69e-11,34;UBERON:0003528,6.46e-11,34;UBERON:0002020,6.46e-11,34;UBERON:0003075,7.92e-11,82;UBERON:0007284,7.92e-11,82;UBERON:0001869,2.35e-10,32;UBERON:0002791,3.02e-10,32;UBERON:0002346,3.72e-10,86;UBERON:0003056,7.51e-10,61;UBERON:0000956,3.14e-08,25;UBERON:0000203,3.14e-08,25;UBERON:0001950,4.38e-08,20;UBERON:0002619,5.89e-08,22;UBERON:0011216,2.34e-07,223;UBERON:0010371,4.07e-07,104;UBERON:0007023,5.86e-07,114 | |||
|phase1_expression=2.90685406832891,0.856402095563933,3.24195129420734,1.0007329835313,1.34088328328186,0,0,1.26343974685366,2.87304191019822,0.491467873003018,1.39560233594486,1.09220686065086,0.791300934685361,0.37129905888014,0.994192127183747,0.672325146451775,0.602694528023977,0.730310090387373,0.975865597581014,0.61560529038394,0.816002764977012,1.88072832886853,2.57612388417951,2.05311637609326,2.51085279189606,2.21598876669059,2.21671591514854,2.83358812729245,1.57345710739562,0.383829398097213,2.32224184974114,0,0,0.739508020333575,0.154934401160603,0.710846162437108,1.46800219667424,1.10799081706375,2.4065333696417,2.82114131930607,3.35873211359887,4.21061765824673,3.34848237924443,1.16318591023652,1.13362783106643,2.18325655069035,1.16214518452842,0.822335776043652,0.309706370895104,0.863077176966451,1.5369642391746,0.47296445977717,1.37898272294647,3.87290810150296,0,1.50593871634084,0.545812300115692,0.674170453335254,1.53041946185451,0.962787081228281,1.91801137739712,1.9791078011203,0.797854630486527,0.852449501065388,1.45104619314292,1.13477044938228,1.86846674698672,0.75374599577023,2.08593167368081,0.217188844705117,1.81619850790011,0.736555271975129,0.632924774881769,3.80259515361495,6.16552469898626,6.49941801075965,6.06574608191074,6.60778328502628,5.6253955343978,5.13022938734247,5.76858363877361,7.30656615058536,0,3.27683166757279,2.66852776159066,2.56038133539904,6.4063357925762,2.87376219977242,3.30522436392431,2.86216126360609,1.1384259382189,2.34894875748376,0.382273228125229,1.32171328579026,1.68152568894461,3.423993102076,0.786839080455332,1.17903228824749,0.411202997999018,0.334372990781356,0.32592226663359,1.4203434172042,0,1.11410456885174,0.883817722424512,0.664601683750863,0.812411591295047,0.384273959177026,0.520237390239513,1.80881695064044,2.21080014228679,2.60822777161547,1.4828656316206,1.87278579662799,0,1.47302145506836,1.53288197440768,2.40539211837841,0.759059076058509,1.59282707162048,1.30216690771284,0.950452044448374,1.80690142893327,2.17577238962511,0,1.18388626022008,1.64225599384209,0.80642697289893,0.534880391567015,0.289648807765598,0,0.670700859703636,2.17366355134002,1.0843174571537,1.50401373190767,1.01392563272577,0.795285947051099,0.973269740605272,1.32348744029695,1.77383517970051,2.10803485663503,1.89919659471683,1.82147644146271,1.48313777113772,5.51730569212962,4.52737316978095,2.52620124985844,1.66943437013739,2.28797964312051,3.34311751196608,0.198762407366705,0,0.347140501607594,1.13061588384802,0.838998872419812,0.550236083880135,0.626984899610432,1.55050055501597,2.13459757612026,1.00416183829401,0,0,0.24406205754817,0.735326160691737,0.81014194788176,1.60739510911344,1.34717623575702,1.57656072676651,1.53316637465883,0.949265659568129,0.732806975721629,0,0,1.3082821564276,1.98788780678127,0.633152558322899,0.264818361626438,1.14734648299525,0.354668382198357,1.12135520028461,4.2699598291882,0.24666754841716,2.17847724779836,3.23305612967251,1.30769522490767,2.11900398702904,1.72852777344,1.87457145467037,0.312160076830321,0.570471821544449,0.149448680551801,0.352303495931295,0.323745888736263,0.421352420106746,0.816616685019573,0.491337269247072,1.34323515528495,1.18800285728205,0,0.910161361938026,2.15585442544872,0,0.250237039743928,0.554128230968366,0.438977620880838,0,1.35214253015937,1.02088964844019,0.89694817844431,1.70845911054854,0.423863802319124,0.300091096084402,0.515262646192195,1.54584324027377,2.41951913231067,0.675105328965065,1.85130309806277,0.504867548488229,1.47279837827679,1.13152239773168,0.355009592516614,0.604512589365842,1.18692414617341,0,0.545492241181669,0,1.58565817968474,2.12047629314376,1.97529702878181,1.86589899027667,2.52320850875628,2.91981887260664,1.56449532329816,1.28648187638577,0,0,0,2.36613600079688,2.02301628093722,0.964044119533928,1.7647035637183,0.871517776369625,2.60997681022206,0.404493924480493,0.392442930250692,0.769494313892781,2.95262181849859,0,0.8231480226628,0,0,0.982827216677626,1.18157981336281,1.7658523976586,0.491953754172454,1.20097467208968,0.548751427043128,0,0.904760751704678,1.75918045801206,0.325808305310325,0,0,2.08674728955138,1.87853910777315,0.433099343283221,0,0.951270761172991,0.790204397959275,0,2.95460407304877,3.7440682422278,2.97262324577457,0,0.16798212819886,0.141775097242386,0.626909658919938,1.45316969256981,0,0.492663237895943,2.11316241631742,1.24396869324463,1.72943944100354,2.5248486685276,1.33345578013555,1.52795370223311,0,3.4214489204541,1.02827492703324,0.300343057843917,2.5724378936752,2.80327710863402,1.74384027533312,1.3200891447771,2.19761916788222,0,0,1.06375246633948,3.12022310734098,0,1.41849132023278,0.266422179016099,3.0025378668211,1.62786481617433,0.823240336780769,0,2.84313558994037,0,1.20575750823834,3.48613383440118,1.99945982364114,2.43247561282381,4.01805673145701,0,1.19812427745791,4.59447743336456,0,0.434343920002738,1.02738161275192,0.895304816199478,1.34502172792233,0.788123040807709,0.431255149719035,0.513372145118994,3.81141936333695,7.8083912314573,0.773288812777695,4.69045542936177,1.91381625495949,0,2.99161459204025,0.414415513436035,1.59498939234882,0,1.35632511849868,0.623912584592421,1.07057393278297,1.89242898040722,2.10854546986884,1.80567659836631,4.5481500811197,4.1389228517002,0.664225598535437,0.737476674166813,0.781952530212746,0.391602314925481,0,2.27444828735176,2.5885704098234,1.60091336705167,1.5156378572313,0,0.30239029332968,4.71404834855676,0.767309866440312,3.64858122762996,2.81906128362542,2.55853624533352,3.69964018630297,1.48418066444991,0.462629081407967,0.177561725313127,0.0821271560138091,0,0,0.604297247958111,0.200506470303285,5.15653538041019,2.87036120411517,1.0925470080403,1.83574180943194,2.25599806453706,1.07821471946181,0,2.92278449306521,1.47772280450026,0,1.19065593693561,0.431831832204279,3.08454505380579,1.08378575017541,2.00675909541941,1.01950509218015,0.831076008928724,1.34324852833307,1.09629938322967,0.522870902049801,2.56450125116389,2.95213181129735,4.55529752530024,1.64865618636356,5.03632056500889,6.60075999364704,0,1.95018073810956,1.6068392984416,1.7400729292582,0,0,0.413509717453592,0.322260734604821,0.290033387828457,0.852266274161009,0.890320356467374,1.4875642382488,1.15314040419064,0.765676274967505,3.13589120652205,4.64845549297286,1.88887408098384,0,0.308033580176089,0,0,0.18532421910392,1.28812398067792,0.744316738719335,0.316379424718726,1.33441135746677,0.511795582622668,1.28381696410176,0.636406495851874,0.78494864019923,0.719489830333259,3.0199073270966,1.7671860351853,0.808729926293264,1.58510321173008,0.842516912477962,0,0.243713489631284,0,2.32049849393576,3.67654123079653,0,0,0,0.876901770507525,0.578775534266688,0.655894752046633,0.811641507850816,0.30982349809975,0,0.573645408816206,2.45622602532803,0,0,1.26664581178598,1.97576935775941,0,1.74967360122491,2.21310859268678,0,0,0.847294206991012,0,0,0,0.689170200620878,3.04468565539302,0.764637207142375,4.5571774973933,1.90585420366231,6.17043409629291,2.59389324477087,2.70015718619057,3.96562588147135,1.92283328029452,0.962479855263359,2.20536194382929,0.929015875628594,2.16403819464667,1.63626239701352,2.71024663638998,0.997896857164083,3.06408592211787,5.71518673354484,3.57084134302011,1.96558024679421,2.28234679033192,5.64047624782884,2.50634477090067,1.86220955581764,4.17528995269619,5.65039180134933,2.98092366383228,10.3051603426729,3.6868891717015,3.57881772627865,1.16794399198336,2.9308214310306,1.67043704337145,1.23087398947712,2.70455678475983,4.32993558397166,0,3.55567026775618,0.73254089635947,3.03401304373784,4.56917875537661,1.70481688083848,1.19372242368845,0.593929361665277,0.614321404198464,3.97659059106519,2.67271891179974,2.44879151050393,1.6480387422676,1.90012867315194,0.996239941255349,0.828851746593443,1.51159648712566,1.73856760253663,1.10776324914963,0,1.97710372524119,11.8153975285902,3.5810065915881,1.87422470710174,0,0,2.90799823828566,3.15411533750294,7.98455192004777,1.04171104434093,2.53633999988968,0.724999575434793,1.4793148277115,2.2882828526349,3.54581522651905,4.48166385213904,4.08246458736556,5.38237484293206,3.54296554325536,2.17073589525734,1.52581736317083,3.42795705786796,5.02430952221031,2.4132393686937,5.5558616394685,1.95193241990045,1.46205491157214,6.95046540666707,1.1528195219403,6.01376217545473,4.56318962072434,2.23300811812344,0.457987967009312,4.26427820814908,2.04386596391473,0.784901281975124,2.99181027420282,3.15833924864053,2.15668787749514,2.18168063068596,1.70778359451767,3.65554131654871,2.3209787098083,1.79556088975062,0.706765357169704,4.32777279484182,2.98578579323551,1.06149077404007,0.611030144933625,0,1.23563938946503,0.835375596043643,4.58327704268604,0,4.45102446878144,1.45963831372533,2.93496928398135,2.18502341580683,3.15667522279512,1.20990716048664,5.81538247097931,3.98075451659474,3.15679180770434,4.14752765588989,6.64653872707185,1.98595173525299,2.82539626566503,4.77889719091835,3.69992409838731,4.16024019039416,0.694238953340524,2.25382514053069,1.30588809870604,0.873633341210151,1.0319161948297,2.03188295707079,6.79730648901526,1.72442459811739,0.775912131907355,5.38362372818152,0.90392296312213,1.64450309576101,0.19871461170299,4.36844492095563,5.47543871657448,2.96587634930675,1.70762395791482,3.9961921916426,3.74635084600676,3.77970767347522,2.05913997434357,4.60975353562079,1.11827282008889,2.35694034616795,0.407712618220842,1.04602846312333,5.09991088181609,0.288950589901519,5.4037825983881,2.46429682005587,2.55493176133945,1.71906176567983,1.57732412567589,1.39641200636127,1.14580212005842,0.717873024576814,2.1964690054889,0.858452096273142,0.669514372325618,2.28423806454869,1.80149941771202,1.16495949527454,2.36349546921671,2.22522817629149,1.75249214020881,4.72451911270794,4.57235993155236,1.59045937961861,2.45166131000836,3.85807556316046,4.81388028090318,2.9080823662043,0.449947783103001,2.32140586367385,4.25246896606173,2.68347750079413,2.12775409707835,2.51782023047991,1.5840050477911,3.22717210799121,0.767660789277781,2.85878130549347,1.32418394073086,0,2.17199840701485,1.72844298240254,0.979762080328227,1.19730191562487,3.44788587147224,0.170388021785422,1.58636928128176,0.732761168390412,1.32506888912221,3.36135686540031,3.30581504356725,2.22412889249628,1.40963004463334,1.81538601365081,1.41483874589699,0.828478110694391,3.47316215268366,0.197611631897944,0.852548188666271,3.19170628885091,0.544017803369474,0,0.612691153526923,3.27872630709804,7.85270481251171,1.77213635993397,3.05065662254908,1.8778639605975,2.86704597845036,3.66065870071613,3.97416978824854,3.45871587340577,0.874862855734746,3.03298235083296,5.42384133735438,1.17632909849086,2.34167452903441,1.88397337194073,0.149254802886874,0.467426619694449,1.66441758450784,0,0.251567901752575,0,0.228840068396924,0.756154618816195,0.15543720058278,0,0.318593534327405,0.899606224327209,0.465788870628778,0,0,0.521745061811734,0.751288044986092,1.90402606084398,0.406870733204662,0,0.966695013382396,1.39210127963548,0.398095888698616,1.20008329398946,2.40376993627955,1.6837474438296,0,4.81549576018258,1.71553273099941,1.82696004375648,1.36023555307363,1.62065732026684,3.67105056759701,3.22359913946677,1.85280868296583,2.41212454536578,0.353378291891762,2.70079653579281,2.36519416914302,3.33113974164331,1.38172136692479,2.73473960559644,2.21213497842769,0.389720617678777,0.930053882193542,0.654261577023377,5.56936743038901,2.94927490504463,1.26787274015176,0.79994958341972,3.62751880960079,4.99423441016365,3.40509572140102,2.57748330352577,5.73505981649722,7.46492712039567,5.88314107996798,2.04867141653695,5.03251013938868,5.35127227140868,4.58277830875868,1.2754495206101,0.867550349813015,1.11728983594649,1.59002175326709,3.78536376006016,0.80057074828547,2.82140754952547,0.3062454773532,3.59683660540173,4.25089728976755,2.87340946302872,3.89721092057435,5.29350562065608,5.67089470206587,4.03689114079628,0,0.392590874004102,2.71330363699803,0.550285795565037,2.77261598760812,1.90691047733584,1.3807198521202,0.198916222116275,1.65462722368366,1.61364054962816,1.56302802246618,4.7143205006656,2.45657876265145,0.591424344868181,3.8496423232485,3.90539049306924,2.68692835451539,3.6781169912466,7.11067251723685,4.38606213485746,2.48105589194647,0.175871244359621,1.53314913167514,1.07140367175657,2.69026977775059,4.24875922965642,5.69155478378244,1.1531308121143,0.691403925334676,1.71488009437418,5.16569970623921,4.20945750802234,2.2456829767954,1.11231401892069,1.64835494986079,3.14231179832004,1.96190514319652,2.73947616152849,3.88669664193519,0.47775168788705,3.00201485541957,3.00225862292181,0.697448552208751,3.82488199065675,0,1.03608082081518,1.7071847709395,0,2.58136415292167,2.48497201534187,4.17545683319873,1.69354820076372,1.60374807980835,0,0,1.90154234056247,1.57040373784389,0.243835849964539,0,0.513314034281235,1.1598144313382,2.4285549652957,1.87151570769685,2.18845852677505,7.96764608209709,4.85668152767528,3.84791808609002,4.07599677630019,0.463044948647668,0.655678681511872,0.940634592723046,0.980593287015622,2.35676547101626,2.55201007249429,4.1586496045792,2.9585900930838,0.849635573439084,2.34959794949634,1.99819452718089,1.79894080664872,1.07132363163395,0.705789743431384,1.5245859670942,0,2.75237570042724,3.15347082933193,2.83988811947732,4.35145537221854,3.49080552272302,1.0580536810308,0,0.462175628631418,0.865253124247578,1.51399709802095,6.33740317389434,2.66066852124018,3.05966489225945,5.34434810531121,1.56221329209236,1.75495277504663,1.28823786971007,0.803892390468535,2.48750831837634,2.79269088827117,0.213233981900981,1.90451545170992,0.968833647540092,2.3588391432426,3.3639558774184,2.73682780596109,4.24446096812261,1.30630048738177,1.02669990325584,1.41439311330634,1.72133292942423,2.99394320891412,3.66314708749385,5.44309463976349,0,1.43720323370539,0,2.68931177202306,2.84827324821017,0,1.20764276154616,2.56454793842586 | |||
|short_description=p3@LRRC8D | |||
}} |
Revision as of 19:30, 10 January 2014
Short description: | p3@LRRC8D |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LRRC8D_5end |
Coexpression cluster: | NA |
Association with transcript: | -16bp_to_ENST00000525774, NM_001134479, uc001dnm.2_5end |
EntrezGene: | LRRC8D |
HGNC: | 16992 |
UniProt: | E9PJ89B3KRU1Q7L1W4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nervous system | 7.42e-17 | 89 |
central nervous system | 1.05e-15 | 81 |
neural tube | 6.08e-15 | 56 |
neural rod | 6.08e-15 | 56 |
future spinal cord | 6.08e-15 | 56 |
neural keel | 6.08e-15 | 56 |
regional part of nervous system | 4.56e-14 | 53 |
regional part of brain | 4.56e-14 | 53 |
regional part of forebrain | 9.57e-13 | 41 |
forebrain | 9.57e-13 | 41 |
anterior neural tube | 9.57e-13 | 41 |
future forebrain | 9.57e-13 | 41 |
brain | 2.16e-12 | 68 |
future brain | 2.16e-12 | 68 |
telencephalon | 3.69e-11 | 34 |
brain grey matter | 6.46e-11 | 34 |
gray matter | 6.46e-11 | 34 |
neural plate | 7.92e-11 | 82 |
presumptive neural plate | 7.92e-11 | 82 |
cerebral hemisphere | 2.35e-10 | 32 |
regional part of telencephalon | 3.02e-10 | 32 |
neurectoderm | 3.72e-10 | 86 |
pre-chordal neural plate | 7.51e-10 | 61 |
cerebral cortex | 3.14e-08 | 25 |
pallium | 3.14e-08 | 25 |
neocortex | 4.38e-08 | 20 |
regional part of cerebral cortex | 5.89e-08 | 22 |
organ system subdivision | 2.34e-07 | 223 |
ecto-epithelium | 4.07e-07 | 104 |
adult organism | 5.86e-07 | 114 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 3.72e-10 | 239 |
cancer | 6.93e-10 | 235 |
cell type cancer | 2.99e-07 | 143 |